High dimensional tori and chaotic and intermittent transients in magnetohydrodynamic Couette flows

The magnetised spherical Couette (MSC) problem, a three dimensional magnetohydrodynamic paradigmatic model in geo- and astrophysics, is considered to investigate bifurcations to high-dimensional invariant tori and chaotic flows in large scale dissipative dynamical systems with symmetry. The main goal of the present study is to elucidate the origin of chaotic transients and intermittent behaviour from two different sequences of Hopf bifurcations involving invariant tori with four fundamental frequencies, which may be resonant. Numerical evidence of the existence of a crisis event destroying chaotic attractors and giving rise to the chaotic transients is provided. It is also shown that unstable invariant tori take part in the time evolution of these chaotic transients. For one sequence of bifurcations, the study demonstrates that chaotic transients display on–off intermittent behaviour. A possible explanatory mechanism is discussed.Peer ReviewedPostprint (published version

Rotating waves arising from the instability of magnetized spherical Couette flows

Rotating waves of various azimuthal wavenumbers appear in magnetized spherical Couette flows in time- dependent states. The criteria for the flow to enter a time-dependent state are determined by the values of Reynolds and Hartmann numbers for a given geometric configuration of the spherical Couette system. These time-dependent states of the flow have been referred to as the radial jet, the return flow and the shear layer instabilities. In the present work, rotating waves in the flow during radial jet and return flow instabilities are observed. The rotating waves both have an azimuthal wavenumber of 3, but vary in their spatial and temporal properties.Postprint (published version

Rotating waves arising from the instability of magnetized spherical Couette flows

Rotating waves of various azimuthal wavenumbers appear in magnetised spherical Couette flows in time-dependent states. The criteria for the flow to enter a time-dependent state are determined by the values of Reynolds and Hartmann numbers for a given geometric configuration of the spherical Couette system. These time-dependent states of the flow have been referred to as the radial jet, the return flow and the shear layer instabilities. In the present work, rotating waves in the flow during radial jet and return flow instabilities are observed. The rotating waves both have an azimuthal wavenumber of 3, but vary in their spatial and temporal properties.Postprint (published version

No fire zone : the killing fields of Sri Lanka : discussion = 無戰火地帶 : 斯里蘭卡之殺戮戰場 : 映後座談

On 24th July 2016, François Houtart and Jude Lal Fernando showed us a documentary called No Fire Zone — the Killing Fields of Sri Lanka . This is the discussion session

Dynamic transitions of the magnetized spherical Couette flow between its base state and the return flow instability

The transition between the stable base state of the magnetized spherical Couette (MSC) flow and the return flow instability is experimentally investigated. The experiments are conducted using an MSC setup consisting of insulating spheres with the ratio of the inner to the outer radii ri/ro = 0.5, Reynolds number Re = 1000 and Hartmann number Ha ¿ [25, 29]. The transition is characterized by changes in the power spectra of the azimuthal modes in the flow as Ha is dynamically changed. The transition occurs in the interval Ha ¿ [26.5, 27.5]. The evolution of the power spectra of the azimuthal modes exhibits hysteretic effect depending on whether Ha is increased or decreased within the experimental interval. The power spectra in the azimuthal modes m ¿ {3, 4} increases and remains dominant as Ha is increased, while the power spectra in m ¿ {2, 4} are dominant while the flow is time dependent due to return flow instability as Ha is decreased.Peer ReviewedPostprint (published version

Epidemic history of hepatitis C virus genotypes and subtypes in Portugal

Any successful strategy to prevent and control HCV infection requires an understanding of the epidemic behaviour among the different genotypes. Here, we performed the first characterization of the epidemic history and transmission dynamics of HCV subtypes in Portugal. Direct sequencing of NS5B was performed on 230 direct-acting antiviral drugs (DAA)-treatment naïve patients in Lisbon. Phylogenetic analysis was used for subtyping and transmission cluster identification. Bayesian methods were used to reconstruct the epidemic history of HCV subtypes. Sequences were analysed for resistance-associated substitutions (RAS). The majority of strains were HCV-GT1 (62.6%), GT3 (18.3%, all subtype 3a) and GT4 (16.1%). Among GT1, the most frequent were subtypes 1a (75.5%) and 1b (24.5%). Polyphyletic patterns were found in all but 12 lineages suggesting multiple introductions of the different subtypes in this population. Five distinct epidemics were identified. The first significant HCV epidemic in Portugal occurred between 1930s and 1960s, was caused almost exclusively by GT1b and was likely associated with blood transfusions. Rapid expansion of GT3a occurred in the 1960s and GT1a in the 1980s, associated with intravenous drug use. The most recent epidemics were caused by GT4a and GT4d and seem to be associated with the resurgence of opioid use. The C316N substitution was found in 31.4% of GT1b-patients. Close surveillance of patients bearing this mutation and undergoing dasabuvir-based regimens will be important to determine its impact on treatment outcome.publishersversionpublishe

What clinicians who practice in countries reaching malaria elimination should be aware of: lessons learnt from recent experience in Sri Lanka

Following progressive reduction in confirmed cases of malaria from 2002 to 2007 (41,411 cases in 2002, 10,510 cases in 2003, 3,720 cases in 2004, 1,640 cases in 2005, 591 cases in 2006, and 198 cases in 2007). Sri Lanka entered the pre-elimination stage of malaria in 2008. One case of indigenous malaria and four other cases of imported malaria are highlighted here, as the only patients who presented to the Professorial Medical Unit, Colombo North Teaching Hospital, Ragama, Sri Lanka over the past eight years, in contrast to treating several patients a week about a decade ago. Therefore, at the eve of elimination of malaria from Sri Lanka, it is likely that the infection is mostly encountered among travellers who return from endemic areas, or among the military who serve in un-cleared areas of Northern Sri Lanka. They may act as potential sources of introducing malaria as until malaria eradication is carried out. These cases highlight that change in the symptomatology, forgetfulness regarding malaria as a cause of acute febrile illness and deterioration of the competency of microscopists as a consequence of the low disease incidence, which are all likely to contribute to the delay in the diagnosis. The importance regarding awareness of new malaria treatment regimens, treatment under direct observation, prompt notification of suspected or diagnosed cases of malaria and avoiding blind use of anti-malarials are among the other responsibilities expected of all clinicians who manage patients in countries reaching malaria elimination

Rate-Induced Transitions in Networked Complex Adaptive Systems: Exploring Dynamics and Management Implications Across Ecological, Social, and Socioecological Systems

Complex adaptive systems (CASs), from ecosystems to economies, are open systems and inherently dependent on external conditions. While a system can transition from one state to another based on the magnitude of change in external conditions, the rate of change -- irrespective of magnitude -- may also lead to system state changes due to a phenomenon known as a rate-induced transition (RIT). This study presents a novel framework that captures RITs in CASs through a local model and a network extension where each node contributes to the structural adaptability of others. Our findings reveal how RITs occur at a critical environmental change rate, with lower-degree nodes tipping first due to fewer connections and reduced adaptive capacity. High-degree nodes tip later as their adaptability sources (lower-degree nodes) collapse. This pattern persists across various network structures. Our study calls for an extended perspective when managing CASs, emphasizing the need to focus not only on thresholds of external conditions but also the rate at which those conditions change, particularly in the context of the collapse of surrounding systems that contribute to the focal system's resilience. Our analytical method opens a path to designing management policies that mitigate RIT impacts and enhance resilience in ecological, social, and socioecological systems. These policies could include controlling environmental change rates, fostering system adaptability, implementing adaptive management strategies, and building capacity and knowledge exchange. Our study contributes to the understanding of RIT dynamics and informs effective management strategies for complex adaptive systems in the face of rapid environmental change.Comment: 25 pages, 4 figures, 1 box, supplementary informatio

Facile discovery of surrogate cytokine agonists

Cytokines are powerful immune modulators that initiate signaling through receptor dimerization, but natural cytokines have structural limitations as therapeutics. We present a strategy to discover cytokine surrogate agonists by using modular ligands that exploit induced proximity and receptor dimer geometry as pharmacological metrics amenable to high-throughput screening. Using VHH and scFv to human interleukin-2/15, type-I interferon, and interleukin-10 receptors, we generated combinatorial matrices of single-chain bispecific ligands that exhibited diverse spectrums of functional activities, including potent inhibition of SARS-CoV-2 by surrogate interferons. Crystal structures of IL-2R:VHH complexes revealed that variation in receptor dimer geometries resulted in functionally diverse signaling outputs. This modular platform enabled engineering of surrogate ligands that compelled assembly of an IL-2R/IL-10R heterodimer, which does not naturally exist, that signaled through pSTAT5 on T and natural killer (NK) cells. This “cytokine med-chem” approach, rooted in principles of induced proximity, is generalizable for discovery of diversified agonists for many ligand-receptor systems

Improved functionalization of oleic acid-coated iron oxide nanoparticles for biomedical applications

Superparamagnetic iron oxide nanoparticles can providemultiple benefits for biomedical applications in aqueous environments such asmagnetic separation or magnetic resonance imaging. To increase the colloidal stability and allow subsequent reactions, the introduction of hydrophilic functional groups onto the particles’ surface is essential. During this process, the original coating is exchanged by preferably covalently bonded ligands such as trialkoxysilanes. The duration of the silane exchange reaction, which commonly takes more than 24 h, is an important drawback for this approach. In this paper, we present a novel method, which introduces ultrasonication as an energy source to dramatically accelerate this process, resulting in high-quality waterdispersible nanoparticles around 10 nmin size. To prove the generic character, different functional groups were introduced on the surface including polyethylene glycol chains, carboxylic acid, amine, and thiol groups. Their colloidal stability in various aqueous buffer solutions as well as human plasma and serum was investigated to allow implementation in biomedical and sensing applications.status: publishe