Achiral, Helicity Preserving, and Resonant Structures for Enhanced Sensing of Chiral Molecules

We derive a set of design requirements that lead to structures suitable for molecular circular dichroism (CD) enhancement. Achirality of the structure and two suitably selected sequentially incident beams of opposite helicity ensures that the CD signal only depends on the chiral absorption properties of the molecules, and not on the achiral ones. Under this condition, a helicity preserving structure, which prevents the coupling of the two polarization handednesses, maximizes the enhancement of the CD signal for a given ability of the structure to enhance the field. When the achirality and helicity preservation requirements are met, the enhancement of the CD signal is directly related to the enhancement of the field. Next, we design an exemplary structure following the requirements. The considered system is a planar array of silicon cylinders under normally incident plane-wave illumination. Full-wave numerical calculations show that the enhancement of the transmission CD signal is between 6.5 and 3.75 for interaction lengths between 1.25 and 3 times the height of the cylinders.Comment: This document is the unedited Authors version of a Submitted Work that was subsequently accepted for publication in ACS Photonics, copyright American Chemical Society after peer review. To access the final edited and published work see 10.1021/acsphotonics.8b01454. The corrections published in 10.1021/acsphotonics.0c00113 are included in this arxiv documen

Surface Plasmon Polaritons Sustained at the Interface of a Nonlocal Metamaterial

Studying basic physical effects sustained in metamaterials characterized by specific constitutive relation is a research topic with a long standing tradition. Besides intellectual curiosity, it derives its importance from the ability to predict observable phenomena that are, if found with an actual metamaterial, a clear indication on its properties. Here, we consider a nonlocal (strong spatial dispersion), lossy, and isotropic metamaterial and study the impact of the nonlocality on the dispersion relation of surface plasmon polaritons sustained at an interface between vacuum and such metamaterial. For that, Fresnel coefficients are calculated and appropriate surface plasmon polaritons existence conditions are being proposed. Predictions regarding the experimentally observable reflection from a frustrated internal reflection geometry are being made. A different behavior for TE and TM polarization is observed. Our work unlocks novel opportunities to seek for traces of the nonlocality in experiments made with nowadays metamaterials.Comment: 8 pages, 6 figure

Dual transcriptomics reveals co-evolutionary mechanisms of intestinal parasite infections in blue mussels Mytilus edulis

On theoretical grounds, antagonistic co-evolution between hosts and their parasites should be a widespread phenomenon but only received little empirical support sofar. Consequently, the underlying molecular mechanisms and evolutionary stepsremain elusive, especially in nonmodel systems. Here, we utilized the natural history of invasive parasites to document the molecular underpinnings of co-evolutionary trajectories. We applied a dual-species transcriptomics approach to experimental cross-infections of blue mussel <i>Mytilus edulis</i> hosts and their invasive parasitic copepods <i>Mytilicola intestinalis</i> from two invasion fronts in the Wadden Sea. We identified differentially regulated genes from an experimental infection contrast for hosts (infected vs. control) and a sympatry contrast (sympatric vs. allopatric combinations)for both hosts and parasites. The damage incurred by <i>Mytilicola</i> infection and the following immune response of the host were mainly reflected in cell division processes,wound healing, apoptosis and the production of reactive oxygen species(ROS). Furthermore, the functional coupling of host and parasite sympatry contrasts revealed the concerted regulation of chitin digestion by a Chitotriosidase 1 homologin hosts with several cuticle proteins in the parasite. Together with the coupled regulation of ROS producers and antagonists, these genes represent candidates that mediate the different evolutionary trajectories within the parasite’s invasion. The host–parasite combination-specific coupling of these effector mechanisms suggests that underlying recognition mechanisms create specificity and local adaptation. In this way, our study demonstrates the use of invasive species’ natural history to elucidate molecular mechanisms of host–parasite co-evolution in the wild

The most vagile host as the main determinant of population connectivity in marine macroparasites

Although molecular ecology of macroparasites is still in its infancy, general patterns are beginning to emerge, e.g. that the most vagile host in a complex life cycle is the main determinantof the population genetic structure of their parasites. This insight stems from the observation that populations of parasites with only freshwater hosts are more structured than those with terrestrial or airborne hosts. Until now, the same has not been tested for marine systems, where, in theory, a fully marine life cycle might sustain high dispersal rates because of the absence of Obvious physical barriers in the sea. Here, we tested whether a marine trematode parasite that utilises migratory birds exhibited weaker population genetic structure than those whose life cycle utilises marine fish as the vagile host. Part of the mitochondrial cytochrome c oxidase 1 (COI) gene wassequenced from individual sporocysts from populations along the Atlantic coast of Europe and North Africa. Strong population structure (Φ-ST = 0.25, p < 0.0001) was found in the fully marinetrematode Bucephalus minimus (hosted by fish), while no significant structure (Φ-ST = 0.015, p = 0.19257) was detected in Gymnophallus choledochus (hosted by birds). However, demographicmodels indicate recent colonisation rather than high dispersal as an alternative explanation of the low levels of structure observed in G. choledochus. Our study is the first to identify significant genetic population structure in a marine autogenic parasite, suggesting that connectivity between populations of marine parasites can be limited despite the general potential for high dispersal of their hosts in the marine environment

Biological invasions and host–parasite coevolution: different coevolutionary trajectories along separate parasite invasion fronts

Host–parasite coevolution has rarely been observed in natural systems. Its study often relies on microparasitic infections introducing a potential bias in the estimation of the evolutionary change of host and parasite traits. Using biological invasions as a tool to study host–parasite coevolution in nature can overcome these biases. We demonstrate this with a cross-infection experiment in the invasive macroparasite <i>Mytilicola intestinalis</i> and its bivalve host, the blue mussel <i>Mytilus edulis</i>. The invasion history of the parasite is well known for the southeastern North Sea and is characterised by two separate invasion fronts that reached opposite ends of the Wadden Sea (i.e. Texel, The Netherlands and Sylt, Germany) in a similar time frame. The species’ natural history thus makes this invasion an ideal natural experiment to study host–parasite coevolution in nature. We infected hosts from Texel, Sylt and Kiel (Baltic Sea, where the parasite is absent) with parasites from Texel and Sylt, to form sympatric, allopatric and naïve infestation combinations, respectively. We measured infection rate, host condition and parasite growth to show that sympatric host–parasite combinations diverged in terms of pre- and post-infection traits within <100 generations since their introduction. Texel parasites were more infective and more efficient at exploiting the host’s resources. Hosts on Texel, on the other hand, evolved resistance to infection, whereas hosts on Sylt may have evolved tolerance. This illustrates that different coevolutionary trajectories can evolve along separate invasion fronts of the parasite, highlighting the use of biological invasions in studies of host–parasite coevolution in nature

An Introduction to Metametaphysics

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