Observations of Dense Molecular Gas in a Quasar Host Galaxy at z=6.42: Further Evidence for a Non-Linear Dense Gas - Star Formation Relation at Early Cosmic Times

We report a sensitive search for the HCN(J=2-1) emission line towards SDSS J1148+5251 at z=6.42 with the VLA. HCN emission is a star formation indicator, tracing dense molecular hydrogen gas (n(H2) >= 10^4 cm^-3) within star-forming molecular clouds. No emission was detected in the deep interferometer maps of J1148+5251. We derive a limit for the HCN line luminosity of L'(HCN) < 3.3 x 10^9 K km/s pc^2, corresponding to a HCN/CO luminosity ratio of L'(HCN)/L'(CO) < 0.13. This limit is consistent with a fraction of dense molecular gas in J1148+5251 within the range of nearby ultraluminous infrared galaxies (ULIRGs; median value: L'(HCN)/L'(CO) = 0.17 {+0.05/-0.08}) and HCN-detected z>2 galaxies (0.17 {+0.09/-0.08}). The relationship between L'(HCN) and L(FIR) is considered to be a measure for the efficiency at which stars form out of dense gas. In the nearby universe, these quantities show a linear correlation, and thus, a practically constant average ratio. In J1148+5251, we find L(FIR)/L'(HCN) > 6600. This is significantly higher than the average ratios for normal nearby spiral galaxies (L(FIR)/L'(HCN) = 580 {+510/-270}) and ULIRGs (740 {+505/-50}), but consistent with a rising trend as indicated by other z>2 galaxies (predominantly quasars; 1525 {+1300/-475}). It is unlikely that this rising trend can be accounted for by a contribution of AGN heating to L(FIR) alone, and may hint at a higher median gas density and/or elevated star-formation efficiency toward the more luminous high-redshift systems. There is marginal evidence that the L(FIR)/L'(HCN) ratio in J1148+5251 may even exceed the rising trend set by other z>2 galaxies; however, only future facilities with very large collecting areas such as the SKA will offer the sensitivity required to further investigate this question.Comment: 5 pages, 2 figures, 2 tables, to appear in ApJL (accepted October 24, 2007

A Sensitive Search for [N II]205 μm Emission in a z = 6.4 Quasar Host Galaxy

We present a sensitive search for the 3P1 → 3P0 ground-state fine structure line at 205 μm of ionized nitrogen ([N II]205μm) in one of the highest-redshift quasars (J1148+5251 at z = 6.42) using the IRAM 30 m telescope. The line is not detected at a (3σ) depth of 0.47 Jy km s^−1, corresponding to a [N II]205μm luminosity limit of L[N II] 7) using the Atacama Large Millimeter/submillimeter Array, for which the highly excited rotational transitions of CO will be shifted outside the accessible (sub-)millimeter bands

Ontology Summit 2008 Communiqué: Towards an open ontology repository

Each annual Ontology Summit initiative makes a statement appropriate to each Summits theme as part of our general advocacy designed to bring ontology science and engineering into the mainstream. The theme this year is "Towards an Open Ontology Repository". This communiqué represents the joint position of those who were engaged in the year's summit discourse on an Open Ontology Repository (OOR) and of those who endorse below. In this discussion, we have agreed that an "ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed." We believe in the promise of semantic technologies based on logic, databases and the Semantic Web, a Web of exposed data and of interpretations of that data (i.e., of semantics), using common standards. Such technologies enable distinguishable, computable, reusable, and sharable meaning of Web and other artifacts, including data, documents, and services. We also believe that making that vision a reality requires additional supporting resources and these resources should be open, extensible, and provide common services over the ontologies

Active Site Mapping of Xylan-Deconstructing Enzymes with Arabinoxylan Oligosaccharides Produced by Automated Glycan Assembly

Xylan-degrading enzymes are crucial for the deconstruction of hemicellulosic biomass, making the hydrolysis products available for various industrial applications such as the production of biofuel. To determine the substrate specificities of these enzymes, we prepared a collection of complex xylan oligosaccharides by automated glycan assembly. Seven differentially protected building blocks provided the basis for the modular assembly of 2-substituted, 3-substituted, and 2-/3-substituted arabino- and glucuronoxylan oligosaccharides. Elongation of the xylan backbone relied on iterative additions of C4-fluorenylmethoxylcarbonyl (Fmoc) protected xylose building blocks to a linker-functionalized resin. Arabinofuranose and glucuronic acid residues have been selectively attached to the backbone using fully orthogonal 2-(methyl)naphthyl (Nap) and 2-(azidomethyl)benzoyl (Azmb) protecting groups at the C2 and C3 hydroxyls of the xylose building blocks. The arabinoxylan oligosaccharides are excellent tools to map the active site of glycosyl hydrolases involved in xylan deconstruction. The substrate specificities of several xylanases and arabinofuranosidases were determined by analyzing the digestion products after incubation of the oligosaccharides with glycosyl hydrolases.Fil: Senf, Deborah. Max Planck Institut für Kolloid und Grenzflächenforschung; Alemania. Freie Universität; AlemaniaFil: Ruprecht, Colin. Max Planck Institut für Kolloid und Grenzflächenforschung; AlemaniaFil: de Kruijff, Goswinus H. M.. Max Planck Institut für Kolloid und Grenzflächenforschung; Alemania. Freie Universität; Alemania. University Mainz. Institute of Institute of Organic Chemistry, Johannes Gutenberg; AlemaniaFil: Simonetti, Sebastián Osvaldo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Química Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas. Instituto de Química Rosario; Argentina. Max Planck Institut für Kolloid und Grenzflächenforschung; AlemaniaFil: Schuhmacher, Frank. Max Planck Institut für Kolloid und Grenzflächenforschung; Alemania. Freie Universität; AlemaniaFil: Seeberger, Peter H.. Max Planck Institut für Kolloid und Grenzflächenforschung; Alemania. Freie Universität; AlemaniaFil: Pfrengle, Fabian. Max Planck Institut für Kolloid und Grenzflächenforschung; Alemania. Freie Universität; Alemani

Millimeter and Radio Observations of z~6 Quasars

We present millimeter and radio observations of 13 SDSS quasars at reshifts z~6. We observed eleven of them with the Max-Planck Millimeter Bolometer Array (MAMBO-2) at the IRAM 30m-telescope at 250 GHz and all of them with the Very Large Array (VLA) at 1.4 GHz. Four sources are detected by MAMBO-2 and six are detected by the VLA at >=3 sigma level. These sources, together with another 6 published in previous papers,yield a submillimeter/millimeter and radio observed SDSS quasar sample at z~6. We use this sample to investigate the far-infrared (FIR) andradio properties of optically bright quasars in the early universe. We compare this sample to lower redshift samples of quasars observed inthe submillimeter and millimeter wavelengths ((sub)mm), and find that the distribution of the FIR to B band optical luminosity ratio (L_FIR/L_B) is similar from z~2 to 6. We find a weak correlation between the FIR luminosity (L_FIR) and B band optical luminosity (L_B) byincluding the (sub)mm observed samples at all redshifts. Some strong (sub)mm detections in the z~6 sample have radio-to-FIR ratios within the range defined by star forming galaxies, which suggests possible co-eval star forming activity with the powerful AGN in these sources. We calculate the rest frame radio to optical ratios (R*_1.4=L_{v, 1.4GHz}/L_{v, 4400A}) for all of the VLA observed sources in the z~6 quasar sample. Only one radio detection in this sample, J083643.85+005453.3, has R*_1.4~40 and can be considered radio loud. There are no strong radio sources (R*_1.4>=100) among these SDSS quasars at z~6. These data are consistent with, although do not set strong constraints on, a decreasing radio-loud quasar fraction with increasing redshift.Comment: 27 pages including 6 figures. AJ accepte

Millimeter Observations of GRB 030329: Continued Evidence for a Two-Component Jet

We present the results of a dedicated campaign on the afterglow of GRB 030329 with the millimeter interferometers of the Owens Valley Radio Observatory (OVRO), the Berkeley-Illinois-Maryland Association (BIMA), and with the MAMBO-2 bolometer array on the IRAM 30-m telescope. These observations allow us to trace the full evolution of the afterglow of GRB 030329 at frequencies of 100 GHz and 250 GHz for the first time. The millimeter light curves exhibit two main features: a bright, constant flux density portion and a steep power-law decline. The absence of bright, short-lived millimeter emission is used to show that the GRB central engine was not actively injecting energy well after the burst. The millimeter data support a model, advocated by Berger et al., of a two-component jet-like outflow in which a narrow angle jet is responsible for the high energy emission and early optical afterglow, and a wide-angle jet carrying most of the energy is powering the radio and late optical afterglow emissionComment: Accepted to ApJ

Measuring the Spin of GRS 1915+105 with Relativistic Disk Reflection

GRS 1915+105 harbors one of the most massive known stellar black holes in the Galaxy. In May 2007, we observed GRS 1915+105 for 117 ksec in the low/hard state using Suzaku. We collected and analyzed the data with the HXD/PIN and XIS cameras spanning the energy range from 2.3-55 keV. Fits to the spectra with simple models reveal strong disk reflection through an Fe K emission line and a Compton back-scattering hump. We report constraints on the spin parameter of the black hole in GRS 1915+105 using relativistic disk reflection models. The model for the soft X-ray spectrum (i.e. < 10 keV) suggests a/M = 0.56(2) and excludes zero spin at the 4 sigma level of confidence. The model for the full broadband spectrum suggests that the spin may be higher, a/M = 0.98(1) (1 sigma confidence), and again excludes zero spin at the 2 sigma level of confidence. We discuss these results in the context of other spin constraints and inner disk studies in GRS 1915+105.Comment: Accepted for publication in Ap

Physical Properties of Molecular Clouds at 2 parsec Resolution in the Low-Metallicity Dwarf Galaxy NGC 6822 and the Milky Way

We present the ALMA survey of CO(2-1) emission from the 1/5 solar metallicity, Local Group dwarf galaxy NGC 6822. We achieve high (0.9 arcsec ~ 2 pc) spatial resolution while covering large area: four 250 pc x 250 pc regions that encompass ~2/3 of NGC 6822's star formation. In these regions, we resolve ~150 compact CO clumps that have small radii (~2-3 pc), narrow line width (~1 km/s), and low filling factor across the galaxy. This is consistent with other recent studies of low metallicity galaxies, but here shown with a 15 times larger sample. At parsec scales, CO emission correlates with 8 micron emission better than with 24 micron emission and anti-correlates with Halpha, so that PAH emission may be an effective tracer of molecular gas at low metallicity. The properties of the CO clumps resemble those of similar-size structures in Galactic clouds except of slightly lower surface brightness and CO-to-H2 ratio ~1-2 times the Galactic value. The clumps exist inside larger atomic-molecular complexes with masses typical for giant molecular cloud. Using dust to trace H2 for the entire complex, we find CO-to-H2 to be ~20-25 times the Galactic value, but with strong dependence on spatial scale and variations between complexes that may track their evolutionary state. The H2-to-HI ratio is low globally and only mildly above unity within the complexes. The SFR-to-H2 ratio is ~3-5 times higher in the complexes than in massive disk galaxies, but after accounting for the bias from targeting star-forming regions, we conclude that the global molecular gas depletion time may be as long as in massive disk galaxies.Comment: Accepted for publication in The Astrophysical Journal; 22 pages, 10 figures, 7 table

First Detection of HCO+ Emission at High Redshift

We report the detection of HCO+(1-0) emission towards the Cloverleaf quasar (z=2.56) through observations with the Very Large Array. This is the first detection of ionized molecular gas emission at high redshift (z>2). HCO+ emission is a star formation indicator similar to HCN, tracing dense molecular hydrogen gas (n(H_2) ~= 10^5 cm^{-3}) within star-forming molecular clouds. We derive a lensing-corrected HCO+ line luminosity of L'(HCO+) = 3.5 x 10^9 K km/s pc^2. Combining our new results with CO and HCN measurements from the literature, we find a HCO+/CO luminosity ratio of 0.08 and a HCO+/HCN luminosity ratio of 0.8. These ratios fall within the scatter of the same relationships found for low-z star-forming galaxies. However, a HCO+/HCN luminosity ratio close to unity would not be expected for the Cloverleaf if the recently suggested relation between this ratio and the far-infrared luminosity were to hold. We conclude that a ratio between HCO+ and HCN luminosity close to 1 is likely due to the fact that the emission from both lines is optically thick and thermalized and emerges from dense regions of similar volumes. The CO, HCN and HCO+ luminosities suggest that the Cloverleaf is a composite AGN--starburst system, in agreement with the previous finding that about 20% of the total infrared luminosity in this system results from dust heated by star formation rather than heating by the AGN. We conclude that HCO+ is potentially a good tracer for dense molecular gas at high redshift.Comment: 5 pages, 3 figures, ApJL, in press (accepted May 17, 2006