Extreme ultraviolet and X-ray spectroheliograph for OSO-H

A complex scientific instrument was designed, fabricated, tested, and calibrated for launch onboard OSO-H. This instrument consisted of four spectroheliographs and an X-ray polarimeter. The instrument is designed to study solar radiation at selected wavelengths in the X-ray and the extreme ultraviolet ranges, make observations at the H-alpha wavelength, and measure the degree of polarization of X-ray emissions

Het nieuwe telen : energie onder de knie : komkommer

Vanuit het idee dat energiezuinig telen bereikt kan worden door goede isolatie, beheersing van de luchtvochtigheid en aanpassing van het teeltplan is project Het Nieuwe Telen komkommer uitgevoerd. Als doelstelling is geformuleerd een energieinput voor warmte van gelijk aan 25 m3 aardgas en handhaving van de de productie op 80 kg of wel 200 stuks per m2. Om de haalbaarheid van deze doelstelling te onderzoeken is een afdeling van 1000 m2 uitgerust met drie schermen- één vast folie en twee beweegbare schermen- en een installatie voor geavanceerde ventilatie

Numerical method to compute hypha tip growth for data driven validation

Hyphae are fungal filaments that can occur in both pathogenic and symbiotic fungi. Consequently, it is important to understand what drives the growth of hyphae. A single hypha cell grows by localized cell extension at their tips. This type of growth is referred to as tip growth. The interconnection between different biological components driving the tip growth is not fully understood. Consequently, many theoretical models have been formulated. It is important to develop methods, such that these theoretical models can be validated using experimentally obtained data. In this paper, we consider the Ballistic Ageing Thin viscous Sheet (BATS) model by Prokert, Hulshof, and de Jong (2019). The governing equations of the BATS model are given by ordinary differential equations that depend on a function called the viscosity function. We present a numerical method for computing solutions of the governing equations that resemble the tip growth. These solutions can be compared to experimental data to validate the BATS model. Since the authors are unaware of the existence of the required data to validate this model, a variety of theoretical scenarios were considered. Our numerical results suggest that if there exists a solution that corresponds to the tip growth, then there exists a one-parameter family of solutions corresponding to the tip growth

The Geometry and Moduli of K3 Surfaces

These notes will give an introduction to the theory of K3 surfaces. We begin with some general results on K3 surfaces, including the construction of their moduli space and some of its properties. We then move on to focus on the theory of polarized K3 surfaces, studying their moduli, degenerations and the compactification problem. This theory is then further enhanced to a discussion of lattice polarized K3 surfaces, which provide a rich source of explicit examples, including a large class of lattice polarizations coming from elliptic fibrations. Finally, we conclude by discussing the ample and Kahler cones of K3 surfaces, and give some of their applications.Comment: 34 pages, 2 figures. (R. Laza, M. Schutt and N. Yui, eds.

A transcriptome-driven analysis of epithelial brushings and bronchial biopsies to define asthma phenotypes in U-BIOPRED

RATIONALE AND OBJECTIVES: Asthma is a heterogeneous disease driven by diverse immunologic and inflammatory mechanisms. We used transcriptomic profiling of airway tissues to help define asthma phenotypes. METHODS: The transcriptome from bronchial biopsies and epithelial brushings of 107 moderate-to-severe asthmatics were annotated by gene-set variation analysis (GSVA) using 42 gene-signatures relevant to asthma, inflammation and immune function. Topological data analysis (TDA) of clinical and histological data was used to derive clusters and the nearest shrunken centroid algorithm used for signature refinement. RESULTS: 9 GSVA signatures expressed in bronchial biopsies and airway epithelial brushings distinguished two distinct asthma subtypes associated with high expression of T-helper type 2 (Th-2) cytokines and lack of corticosteroid response (Group 1 and Group 3). Group 1 had the highest submucosal eosinophils, high exhaled nitric oxide (FeNO) levels, exacerbation rates and oral corticosteroid (OCS) use whilst Group 3 patients showed the highest levels of sputum eosinophils and had a high BMI. In contrast, Group 2 and Group 4 patients had an 86% and 64% probability of having non-eosinophilic inflammation. Using machine-learning tools, we describe an inference scheme using the currently-available inflammatory biomarkers sputum eosinophilia and exhaled nitric oxide levels along with OCS use that could predict the subtypes of gene expression within bronchial biopsies and epithelial cells with good sensitivity and specificity. CONCLUSION: This analysis demonstrates the usefulness of a transcriptomic-driven approach to phenotyping that segments patients who may benefit the most from specific agents that target Th2-mediated inflammation and/or corticosteroid insensitivity

eGenomics: Cataloguing our complete genome collection III

This meeting report summarizes the proceedings of the “eGenomics: Cataloguing our Complete Genome Collection III” workshop held September 11–13, 2006, at the National Institute for Environmental eScience (NIEeS), Cambridge, United Kingdom. This 3rd workshop of the Genomic Standards Consortium was divided into two parts. The first half of the three-day workshop was dedicated to reviewing the genomic diversity of our current and future genome and metagenome collection, and exploring linkages to a series of existing projects through formal presentations. The second half was dedicated to strategic discussions. Outcomes of the workshop include a revised “Minimum Information about a Genome Sequence” (MIGS) specification (v1.1), consensus on a variety of features to be added to the Genome Catalogue (GCat), agreement by several researchers to adopt MIGS for imminent genome publications, and an agreement by the EBI and NCBI to input their genome collections into GCat for the purpose of quantifying the amount of optional data already available (e.g., for geographic location coordinates) and working towards a single, global list of all public genomes and metagenomes

Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets

In the future, we hope to see an open and thriving data market in which users can find and select data from a wide range of data providers. In such an open access market, data are products that must be packaged accordingly. Increasingly, eCommerce sellers present heterogeneous product lines to buyers using faceted browsing. Using this approach we have developed the Ontogrator platform, which allows for rapid retrieval of data in a way that would be familiar to any online shopper. Using Knowledge Organization Systems (KOS), especially ontologies, Ontogrator uses text mining to mark up data and faceted browsing to help users navigate, query and retrieve data. Ontogrator offers the potential to impact scientific research in two major ways: 1) by significantly improving the retrieval of relevant information; and 2) by significantly reducing the time required to compose standard database queries and assemble information for further research. Here we present a pilot implementation developed in collaboration with the Genomic Standards Consortium (GSC) that includes content from the StrainInfo, GOLD, CAMERA, Silva and Pubmed databases. This implementation demonstrates the power of ontogration and highlights that the usefulness of this approach is fully dependent on both the quality of data and the KOS (ontologies) used. Ideally, the use and further expansion of this collaborative system will help to surface issues associated with the underlying quality of annotation and could lead to a systematic means for accessing integrated data resources