Estimating the burden of malaria in Senegal : Bayesian zero-inflated binomial geostatistical modeling of the MIS 2008 data

The Research Center for Human Development in Dakar (CRDH) with the technical assistance of ICF Macro and the National Malaria Control Programme (NMCP) conducted in 2008/2009 the Senegal Malaria Indicator Survey (SMIS), the first nationally representative household survey collecting parasitological data and malaria-related indicators. In this paper, we present spatially explicit parasitaemia risk estimates and number of infected children below 5 years. Geostatistical Zero-Inflated Binomial models (ZIB) were developed to take into account the large number of zero-prevalence survey locations (70%) in the data. Bayesian variable selection methods were incorporated within a geostatistical framework in order to choose the best set of environmental and climatic covariates associated with the parasitaemia risk. Model validation confirmed that the ZIB model had a better predictive ability than the standard Binomial analogue. Markov chain Monte Carlo (MCMC) methods were used for inference. Several insecticide treated nets (ITN) coverage indicators were calculated to assess the effectiveness of interventions. After adjusting for climatic and socio-economic factors, the presence of at least one ITN per every two household members and living in urban areas reduced the odds of parasitaemia by 86% and 81% respectively. Posterior estimates of the ORs related to the wealth index show a decreasing trend with the quintiles. Infection odds appear to be increasing with age. The population-adjusted prevalence ranges from 0.12% in Thille-Boubacar to 13.1% in Dabo. Tambacounda has the highest population-adjusted predicted prevalence (8.08%) whereas the region with the highest estimated number of infected children under the age of 5 years is Kolda (13940). The contemporary map and estimates of malaria burden identify the priority areas for future control interventions and provide baseline information for monitoring and evaluation. Zero-Inflated formulations are more appropriate in modeling sparse geostatistical survey data, expected to arise more frequently as malaria research is focused on eliminatio

Lamb dip of a Quadrupole Transition in H2_2

The saturated absorption spectrum of the hyperfine-less S(0) quadrupole line in the (2-0) band of H$_2$ is measured at $\lambda=1189$ nm, using the NICE-OHMS technique under cryogenic conditions (72~K). It is for the first time that a Lamb dip of a molecular quadrupole transition is recorded. At low (150-200 W) saturation powers a single narrow Lamb dip is observed, ruling out an underlying recoil doublet of 140 kHz. Studies of Doppler-detuned resonances show that the red-shifted recoil component can be made visible for low pressures and powers, and prove that the narrow Lamb dip must be interpreted as the blue recoil component. A transition frequency of 252\,016\,361\,164\,(8) kHz is extracted, which is off by -2.6 (1.6) MHz from molecular quantum electrodynamical calculations therewith providing a challenge to theory.Comment: 4 pages, 5 figure

Variations topographiques de la fructification d’une espèce ligneuse fourragère, Acacia tortilis (Forsk.) au Ferlo, Nord-Sénégal

La production annuelle de gousses de Acacia tortilis, a été suivie sur une toposéquence de 1,8% de dénivellation dans la réserve sylvo-pastorale de Sogobé au Nord-Sénégal. Les observations sont effectuées tous les quinze jours en saison des pluies et une fois par mois en saison sèche. Les suivis simultanés de la fructification de cette espèce en rapport avec l’évolution de l’eau du sol et des variables climatiques vise à caractériser l’effet de la topographie sur la production de gousses par unité de croissance. Les données sont soumises à une analyse multidimensionnelle et à une analyse de variance. La fructification de l’espèce intervient de novembre à juin. L’ACP effectuée à partir des relevés mensuels et des stades de fructification a permis d’identifier trois variables de la fructification : la nouaison des gousses, leur croissance et leur maturité et enfin leur dissémination. Cette dissémination peut être partielle (février et avril) ou totale (avril et juin). La nouaison des gousses concerne les mois de novembre et décembre (saison post-pluvieuse) alors que leur croissance et leur maturité se font de novembre à février (saison sèche fraîche). La dissémination des gousses de cette espèce et leur exploitation pour l’alimentation du bétail seraient à l’origine de la réduction de la densitédes fruits entre janvier et mai qui coïncide avec l’absence du tapis herbacée. Cependant, la biomasse des gousses par unité de croissance est significativement plus élevée chez les arbres de bas-fond qui bénéficient d’une alimentation hydrique plus favorable.Mots clés: Variabilité topographique, production de gousses, fourrage, Acacia tortilis, sahel, Zone sylvopastorale, Nord-Sénégal

Lamb-peak spectrum of the HD (2-0) P(1) line

A saturation spectroscopy measurement of the P(1) line of the ($2-0$) band in HD is performed in a sensitive cavity-enhanced optical setup involving frequency comb calibration. The spectral signature is that of a Lamb-peak, in agreement with a density-matrix model description involving 9 hyperfine components and 16 crossover resonances of $\Lambda$-type. Comparison of the experimental spectra with the simulations yields a rovibrational transition frequency at 209,784,242,007 (20) kHz. Agreement is found with a first principles calculation in the framework of non-adiabatic quantum electrodynamics within 2$\sigma$, where the combined uncertainty is fully determined by theory

Effect of arbuscular mycorrhizal fungal inoculation on growth, and nutrient uptake of the two grass species, Leptochloa fusca (L.) Stapf and Sporobolus robustus Kunth, under greenhouse conditions

The aim of our work was to assess the effect of inoculation with three arbuscular mycorrhizal fungi (AMF) (Rhizoglomus aggregatum (N.C. Schenck and G.S. Sm.) Sieverd., G.A. Silva and Oeh., Funneliformis mosseae (T.H. Nicolson and Gerd.) C. Walker and A. Schüssler. and Rhizoglomus intraradices (N.C. Schenck and G.S. Sm.) Sieverd., G.A. Silva and Oehl.), and a mixed inoculum of these AMF on root colonization, biomass production, mycorrhizal dependency (MD) and shoot mineral contents of two salt tolerant grasses Leptochloa fusca L. Stapf and Sporobolus robusts Kunth. After four months of growth in a sterilized soil and greenhouse conditions, grasses inoculated with AMF showed significantly higher total biomass production than non-inoculated seedlings. MD and shoot mineral contents (especially P) varied with AMF host plants. Maximum values of MD (13%) were observed in L. fusca and S. robustus seedlings when inoculated with R. intraradices and F. mosseae, respectively. Only P contents were higher in the S. robustus/mixed-AMF combinations than the other treatments. These results demonstrate the potential benefits in our experimental conditions of AM inoculation for improving growth and P acquisition particularly in the L. fusca/ F. mosseae and S. robustus/mixed-AMF combinations.Key words: Grass species, symbiosis, mycorrhizal dependency, mineral nutrition

Precision measurement of the fundamental vibrational frequencies of tritium-bearing hydrogen molecules: T2_2, DT, HT

High-resolution coherent Raman spectroscopic measurements of all three tritium-containing molecular hydrogen isotopologues T$_2$, DT and HT were performed to determine the ground electronic state fundamental Q-branch ($v=0 \rightarrow 1, \Delta J = 0$) transition frequencies at accuracies of $0.0005$ cm$^{-1}$. An over hundred-fold improvement in accuracy over previous experiments allows the comparison with the latest ab initio calculations in the framework of Non-Adiabatic Perturbation Theory including nonrelativisitic, relativisitic and QED contributions. Excellent agreement is found between experiment and theory, thus providing a verification of the validity of the NAPT-framework for these tritiated species. While the transition frequencies were corrected for ac-Stark shifts, the contributions of non-resonant background as well as quantum interference effects between resonant features in the nonlinear spectroscopy were quantitatively investigated, also leading to corrections to the transition frequencies. Methods of saturated CARS with the observation of Lamb dips, as well as the use of continuous-wave radiation for the Stokes frequency were explored, that might pave the way for future higher-accuracy CARS measurements.Comment: 15 pages, 13 figure

Hyperfine-Resolved Near-Infrared Spectra of H2_{2}17^{17}O

Huge efforts have recently been taken in the derivation of accurate compilations of rovibrational energies of water, one of the most important reference systems in spectroscopy. Such precision is desirable for all water isotopologues, although their investigation is challenged by hyperfine effects in their spectra. Frequency-comb locked noise-immune cavity-enhanced optical-heterodyne molecular spectroscopy (NICE-OHMS) allows for achieving high sensitivity, resolution, and accuracy. This technique has been employed to resolve the subtle hyperfine splittings of rovibrational transitions of H$_{2}$$^{17}$Oin the near-infrared region. Simulation and interpretation of the H$_{2}$$^{17}$Osaturation spectra have been supported by coupled-cluster calculations performed with large basis sets and accounting for high-level corrections. Experimental $^{17}$O hyperfine parameters are found in excellent agreement with the corresponding computed values. The need of including small hyperfine effects in the analysis of H$_{2}$$^{17}$O spectra has been demonstrated together with the ability of the computational strategy employed for providing quantitative predictions of the corresponding parameters

Analysing the effect of soil organic matter on bacterial communities using T-RFLP fingerprinting: different methods, different stories?

Soil microbial ecology needs robust tools to elucidate ecological questions, such as the impact of fertilisation on soil microbial communities. However, the methods and data analysis used can directly affect the biological conclusions. In this study, the sensitivity of terminal-restriction fragment length polyphorism (T-RFLP) to four restriction enzymes (RE), six peak area thresholds (PAT) from 0 to 10 % and two matrices (presence/absence and relative abundance) was assessed on soils subjected to eight different long-term amendments. The T-RFLP profiles were analysed using a three-step multivariate analysis approach: (i) cluster analysis and non-metric multi-dimensional scaling, (ii) ANOSIM and PERMANOVA and (iii) correlations. The application of organic and mineral fertilisers over 53 years changed the bacterial community composition regardless if the RE, PAT and matrix were used. However, the clustering of the community, the strength of these differences, the correlations with environmental variables and, subsequently, the biological conclusions varied with the use of RE, PAT and matrix. Hence, the bacterial community composition was found to be either highly sensitive to any changes in soil organic matter strongly correlated to C and N concentration, or only affected by large inputs of C or soil management. Different REs can reveal different bacterial populations affected by different drivers, but PATs 0.5 and 1 % should be used especially when using presence/absence matrix. This study also shows the complexity of the effect of organic and mineral amendment on bacterial community composition and stresses the importance to inform on methodological and data analysis parameters