757 research outputs found
Primer and database choice affect fungal functional but not biological diversity findings in a national soil survey
The internal transcribed spacer (ITS) region is the accepted DNA barcode of fungi. Its use has led to a step-change in the assessment and characterisation of fungal communities from environmental samples by precluding the need to isolate, culture, and identify individuals. However, certain functionally important groups, such as the arbuscular mycorrhizas (Glomeromycetes), are better characterised by alternative markers such as the 18S rRNA region. Previous use of an ITS primer set in a nationwide metabarcoding soil biodiversity survey revealed that fungal richness declined along a gradient of productivity and management intensity. Here, we wanted to discern whether this trend was also present in data generated from universal 18S primers. Furthermore, we wanted to extend this comparison to include measures of functional diversity and establish trends with soil types and soil organic matter (SOM) content. Over the 413 individual sites examined (arable, grassland, woodland, moorland, heathland), we found congruent trends of total fungal richness and β-diversity across land uses, SOM class, and soil type with both ITS and 18S primer sets. A total of 24 fungal classes were shared between datasets, in addition to 15 unique to ITS1 and 12 unique to 18S. However, using FUNGUILD, divergent trends of functional group richness became apparent, especially for symbiotrophic fungi, likely driven by an increased detection rate of Glomeromycetes in the 18S dataset. The disparate trends were also apparent when richness and β-diversity were compared to soil properties. Additionally, we found SOM class to be a more meaningful variable than soil type biodiversity for predicting biodiversity analyses because organic matter was calculated for each sample whereas soil type was assigned from a national soil map. We advocate that a combination of fungal primers should be used in large-scale soil biodiversity surveys to capture important groups that can be underrepresented by universal barcodes. Utilising such an approach can prevent the oversight of ubiquitous but poorly described species as well as critically important functional groups
PyClaw: Accessible, Extensible, Scalable Tools for Wave Propagation Problems
Development of scientific software involves tradeoffs between ease of use,
generality, and performance. We describe the design of a general hyperbolic PDE
solver that can be operated with the convenience of MATLAB yet achieves
efficiency near that of hand-coded Fortran and scales to the largest
supercomputers. This is achieved by using Python for most of the code while
employing automatically-wrapped Fortran kernels for computationally intensive
routines, and using Python bindings to interface with a parallel computing
library and other numerical packages. The software described here is PyClaw, a
Python-based structured grid solver for general systems of hyperbolic PDEs
\cite{pyclaw}. PyClaw provides a powerful and intuitive interface to the
algorithms of the existing Fortran codes Clawpack and SharpClaw, simplifying
code development and use while providing massive parallelism and scalable
solvers via the PETSc library. The package is further augmented by use of
PyWENO for generation of efficient high-order weighted essentially
non-oscillatory reconstruction code. The simplicity, capability, and
performance of this approach are demonstrated through application to example
problems in shallow water flow, compressible flow and elasticity
Investigation of current perspectives for NHS Wales sustainable development through procurement policies
Public sector procurement has to operate under the pressure of policies and strict budgets. This paper examines the current perspectives of NHS Wales Shared Services Partnership (NWSSP) on sustainable procurement policies through the environmental, social and economic dimensions. In particular, it investigates the adoption levels of the sustainable procurement policies of buyers (NHS Wales), examines the level of engagement of SMEs to NHS Wales, and explores the support for the existing sustainable procurement function through order-processing analysis of catalogue coverage
Long term drought and warming alter soil bacterial and fungal communities in an upland heathland
The response of soil microbial communities to a changing climate will impact global biogeochemical cycles, potentially leading to positive and negative feedbacks. However, our understanding of how soil microbial communities respond to climate change and the implications of these changes for future soil function is limited. Here, we assess the response of soil bacterial and fungal communities to long-term experimental climate change in a heathland organo-mineral soil. We analysed microbial communities using Illumina sequencing of the 16S rRNA gene and ITS2 region at two depths, from plots undergoing 4 and 18 years of in situ summer drought or warming. We also assessed the colonisation of Calluna vulgaris roots by ericoid and dark septate endophytic (DSE) fungi using microscopy after 16 years of climate treatment. We found significant changes in both the bacterial and fungal communities in response to drought and warming, likely mediated by changes in soil pH and electrical conductivity. Changes in the microbial communities were more pronounced after a longer period of climate manipulation. Additionally, the subsoil communities of the long-term warmed plots became similar to the topsoil. Ericoid mycorrhizal colonisation decreased with depth while DSEs increased; however, these trends with depth were removed by warming. We largely ascribe the observed changes in microbial communities to shifts in plant cover and subsequent feedback on soil physicochemical properties, especially pH. Our results demonstrate the importance of considering changes in soil microbial responses to climate change across different soil depths and after extended periods of time
The functional role of producer diversity in ecosystems
Over the past several decades, a rapidly expanding field of research known as biodiversity and ecosystem functioning has begun to quantify how the world\u27s biological diversity can, as an independent variable, control ecological processes that are both essential for, and fundamental to, the functioning of ecosystems. Research in this area has often been justified on grounds that (1) loss of biological diversity ranks among the most pronounced changes to the global environment and that (2) reductions in diversity, and corresponding changes in species composition, could alter important services that ecosystems provide to humanity (e.g., food production, pest/disease control, water purification). Here we review over two decades of experiments that have examined how species richness of primary producers influences the suite of ecological processes that are controlled by plants and algae in terrestrial, marine, and freshwater ecosystems. Using formal meta-analyses, we assess the balance of evidence for eight fundamental questions and corresponding hypotheses about the functional role of producer diversity in ecosystems. These include questions about how primary producer diversity influences the efficiency of resource use and biomass production in ecosystems, how primary producer diversity influences the transfer and recycling of biomass to other trophic groups in a food web, and the number of species and spatial /temporal scales at which diversity effects are most apparent. After summarizing the balance of evidence and stating our own confidence in the conclusions, we outline several new questions that must now be addressed if this field is going to evolve into a predictive science that can help conserve and manage ecological processes in ecosystems
Report 10b: Considerations for the new scheme. Report to Welsh Government (Contract C210/2016/2017).
Attributing scientific and technical progress: the case of holography
Holography, the three-dimensional imaging technology, was portrayed widely as a paradigm
of progress during its decade of explosive expansion 1964–73, and during its subsequent
consolidation for commercial and artistic uses up to the mid 1980s. An unusually
seductive and prolific subject, holography successively spawned scientific insights, putative
applications and new constituencies of practitioners and consumers. Waves of forecasts,
associated with different sponsors and user communities, cast holography as a field on the
verge of success—but with the dimensions of success repeatedly refashioned. This retargeting
of the subject represented a degree of cynical marketeering, but was underpinned by
implicit confidence in philosophical positivism and faith in technological progressivism.
Each of its communities defined success in terms of expansion, and anticipated continual
progressive increase. This paper discusses the contrasting definitions of progress in holography,
and how they were fashioned in changing contexts. Focusing equally on reputed ‘failures’ of some aspects of the subject, it explores the varied attributes by which success and failure were linked with progress by different technical communities. This important case illuminates the peculiar post-World War II environment that melded the military, commercial and popular engagement with scientific and technological subjects, and the
competing criteria by which they assessed the products of science
Hysteresis and hierarchies: dynamics of disorder-driven first-order phase transformations
We use the zero-temperature random-field Ising model to study hysteretic
behavior at first-order phase transitions. Sweeping the external field through
zero, the model exhibits hysteresis, the return-point memory effect, and
avalanche fluctuations. There is a critical value of disorder at which a jump
in the magnetization (corresponding to an infinite avalanche) first occurs. We
study the universal behavior at this critical point using mean-field theory,
and also present preliminary results of numerical simulations in three
dimensions.Comment: 12 pages plus 2 appended figures, plain TeX, CU-MSC-747
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