Raman Spectroscopic Analysis of Geological and Biogeological Specimens of Relevance to the ExoMars Mission

H.G.M.E., I.H., and R.I. acknowledge the support of the STFC Research Council in the UK ExoMars programme. J.J. and P.V. acknowledge the support of the Grant Agency of the Czech Republic (210/10/0467) and of the Ministry of Education of the Czech Republic (MSM0021620855).Peer reviewedPublisher PD

The fetish market and animal parts trade of Mali, West Africa : an ethnographic investigation into cultural use and significance

While much research has examined the intricate interactions associated with the harvesting of wild animals for human consumption, little work has been undertaken in attempting to understand the greater socio-cultural significance of such use. In addition, to properly understand such systems of interaction, an intimate knowledge is required with regard to the rationale or motivation of resource users. In present day Mali, West Africa, the population perceives and upholds wildlife as a resource not only of valuable animal protein, in a region of famine and drought, but a means of generating income. The animal parts trade is but one mechanism within the larger socio-cultural structure that exploits wildlife through a complex human-environmental system to the benefit of those who participate. Moreover, this informal, yet highly structured system serves both cultural and outsider demand through its goods and services. By using traditional ethnographic investigation techniques (participant observation and semi-structured interviews) in combination with thick narration and multidisciplinary analysis (sociocultural and biological-environmental), it is possible to construct a better understanding of the functions, processes, and motivation of those who participate. In a world where there is but only a limited supply of natural and wild resources, understanding human-environmental systems is of critical value

Self-assembly, nematic phase formation and organocatalytic behaviour of a proline-functionalized lipopeptide

The self-assembly of the amphiphilic lipopeptide PAEPKI-C16 (P = proline, A = alanine, E = glutamic acid, K = lysine, I = isoleucine, C16 = hexadecyl) was investigated using a combination of spectroscopic, microscopic and scattering methods and compared to C16-IKPEAP with the same (reversed) peptide sequence and the alkyl chain positioned N-terminally and which lacks a free N-terminal proline residue. The catalytic activity of these peptides were then compared using a model aldol reaction system. For PAEPKI-C16, Cryo-TEM images showed the formation of micrometer length fibers, which by Small-angle X-ray scattering (SAXS) were found to have a radius of 2.5 - 2.6 nm. Spectroscopic analysis shows these fibers are built from -sheets. This behaviour is in complete contrast to that of C16-IKPEAP which forms spherical micelles with peptides in a disordered conformation [Hutchinson, J. A. et al. J. Phys. Chem. B 2019, 123, 613]. For PAEPKI-C16, the spontaneous alignment of fibers was observed upon increasing pH, which was accompanied by observed birefringence and anisotropy of SAXS patterns. This shows the formation of a nematic liquids and unprecedented nematic hydrogel formation was also observed these lipopeptides at sufficiently high concentrations. SAXS shows retention of an ultrafine (1.7 nm core radius) fibrillar network within the hydrogel. PAEPKI-C16 with free N-terminal proline shows enhanced anti:syn diastereoselectivity and better conversion compared to C16-IKPEAP. The cytotoxicity of PAEPKI-C16 was also lower than C16-IKPEAP for both fibroblast and cancer cell lines. These results highlight the sensitivity of lipopeptide properties to the presence of a free proline residue. The spontaneous nematic phase formation by PAEPKI-C16 points to the highly anisotropy of its ultrafine fibrillar structure and the formation of such a phase at low concentration in aqueous solution may be valuable for future applications

Accelerated drawdown of meridional overturning in the late-glacial Atlantic triggered by transient pre-H event freshwater perturbation

Abrupt decreases of the Atlantic meridional overturning circulation (MOC) during the Late Pleistocene have been directly linked to catastrophic discharges of glacimarine freshwater, triggering disruption of northward marine heat transport and causing global climate changes. Here we provide measurements of excess sedimentary ²³¹Pa/²³⁰Th from a high-accumulation sediment drift deposit in the NE Atlantic that record a sequence of sudden variations in the rate of MOC, associated deep ocean ventilation and surface-ocean climatology. The data series reveal a sequential decrease in the MOC rate at ~18.0 ka BP ago that coincides with only transient and localized freshwater inputs. This change represents a substantial, though not total, cessation in MOC that predates the major Heinrich (H1) meltwater event by at least 1,200 years. These results highlight the potential of targeted freshwater perturbations in promoting substantial MOC changes without a direct linking with catastrophic freshwater surge

Of meat and ritual: Consumptive and religious uses of pangolins in Mali

First paragraph: In many parts of Africa, wildlife is locally consumed for meat (Ingram et al., 2021). Hunting and consuming wild animals for meat is common in rural areas across the continent, and their bodies are openly sold in markets, along roadsides, and in restaurants or ‘chopbars’ (Eniang et al., 2008; Gonodelé Bi et al., 2017; Ingram et al., 2018). In some places, animal body parts are also used in traditional remedies purported to treat a variety of afflictions or bring good fortune (Bakarr et al., 2001; De Surgy, 1993; Imperato, 1977; Kedzierska & Jouvelet, 2006; Marshall, 1998; Sale, 1981). Wildlife is a fundamental component of ritual practices for some communities, both for consumptive ceremonial uses and as part of remedies (e.g. powders to mix with water and drink or bath with, scrubs, ointments) and/or ritual objects such as power objects or fetishes1 . Thus, it comes as no surprise that the body parts of wild animals are also sold in traditional ‘medicine’ or ‘fetish’ markets in several West African countries (Bassett, 2003; Hellweg, 2011; Nikolaus, 2011). Wildlife is still openly sold in traditional ‘medicine’ and/or fetish markets in Mali (Kedzierska & Jouvelet, 2006), Côte d'Ivoire (Bassett, 2003), Togo (D’Cruze et al., 2020), Benin (Djagoun et al., 2013), Ghana (Gbogbo & Daniels, 2019) and Nigeria (Nikolaus, 2011).Output Status: Forthcoming/Available Onlin

Proteome phenotypes discriminate the growing location and malting traits in field-grown barley

Barley is one of the key cereal grains for malting and brewing industries. However, climate variability and unprecedented weather events can impact barley yield and end-product quality. The genetic background and environmental conditions are key factors in defining the barley proteome content and malting characteristics. Here, we measure the barley proteome and malting characteristics of three barley lines grown in Western Australia, differing in genetic background and growing location, by applying liquid chromatography-mass spectrometry (LC-MS). Using data-dependent acquisition LC-MS, 1571 proteins were detected with high confidence. Quantitative data acquired using sequential window acquisition of all theoretical (SWATH) MS on barley samples resulted in quantitation of 920 proteins. Multivariate analyses revealed that the barley lines\u27 genetics and their growing locations are strongly correlated between proteins and desired traits such as the malt yield. Linking meteorological data with proteomic measurements revealed how high-temperature stress in northern regions affects seed temperature tolerance during malting, resulting in a higher malt yield. Our results show the impact of environmental conditions on the barley proteome and malt characteristics; these findings have the potential to expedite breeding programs and malt quality prediction

Application of mass spectrometry-based proteomics to barley research

Barley (Hordeum vulgare) is the fourth most cultivated crop in the world in terms of production volume, and it is also the most important raw material of the malting and brewing industries. Barley belongs to the grass (Poaceae) family and plays an important role in food security and food safety for both humans and livestock. With the global population set to reach 9.7 billion by 2050, but with less available and/or suitable land for agriculture, the use of biotechnology tools in breeding programs are of considerable importance in the quest to meet the growing food gap. Proteomics as a member of the “omics” technologies has become popular for the investigation of proteins in cereal crops and particularly barley and its related products such as malt and beer. This technology has been applied to study how proteins in barley respond to adverse environmental conditions including abiotic and/or biotic stresses, how they are impacted during food processing including malting and brewing, and the presence of proteins implicated in celiac disease. Moreover, proteomics can be used in the future to inform breeding programs that aim to enhance the nutritional value and broaden the application of this crop in new food and beverage products. Mass spectrometry analysis is a valuable tool that, along with genomics and transcriptomics, can inform plant breeding strategies that aim to produce superior barley varieties. In this review, recent studies employing both qualitative and quantitative mass spectrometry approaches are explored with a focus on their application in cultivation, manufacturing, processing, quality, and the safety of barley and its related products

Polymorphism of asymmetric catalysts based on amphiphilic lipopeptides in solution

The self-assembly of model [P]RWG lipopeptides (P: L-proline, R: L-arginine, W: L-tryptophan, G: L-glycine), containing one or two aliphatic octadecyl (C18) chains in water and cyclohexanone/water solutions was examined. The self-assembly of mixtures of these RWG and PRWG lipopeptides was also investigated. These materials presented a similar critical aggregation concentration of ∼4.0 × 10−4 wt% and were characterized by unordered secondary structures with some β-sheet content. TEM and cryo-TEM revealed the presence of mainly nanotape structures with micelles observed for systems rich in PRWG(C18H37). Analysis of detailed SAXS form factor measurements revealed the presence of bilayers 3–4 nm thick while the PRWG(C18H37) micelles have a core radius of approximately 3 nm, and a shell thickness of 2 nm. For the cyclohexanone/water systems polymorphs containing cluster aggregates (with radius of 0.25 nm to 0.50 nm) and some elongated structures (with radius of 5.7 nm to 26.1 nm) were seen. Longer structures were formed with the increase of the proline-containing lipopeptide content. The catalytic activity of these peptides was assessed using a model nitro-aldol reaction. The concentration of water in the reaction system influenced the conversion, higher content promoted better efficiency for the water systems, but the opposite was observed for the cyclohexanone/water samples

Detection of reduced carbon in a basalt analogue for martian nakhlite : a signpost to habitat on Mars

C. W. Taylor and J. Still are thanked for skilled technical support. J. Parnell, H.G.M. Edwards, I. Hutchinson and R. Ingley acknowledge the support of the UKSA and the STFC Research Council in the UK ExoMars programme. L. V. Harris and S. McMahon acknowledge STFC studentship funding.Peer reviewedPublisher PD

Use of the Oxford Handicap Scale at hospital discharge to predict Glasgow Outcome Scale at 6 months in patients with traumatic brain injury

BACKGROUND: Traumatic brain injury (TBI) is an important cause of acquired disability. In evaluating the effectiveness of clinical interventions for TBI it is important to measure disability accurately. The Glasgow Outcome Scale (GOS) is the most widely used outcome measure in randomised controlled trials (RCTs) in TBI patients. However GOS measurement is generally collected at 6 months after discharge when loss to follow up could have occurred. The objectives of this study were to evaluate the association and predictive validity between a simple disability scale at hospital discharge, the Oxford Handicap Scale (OHS), and the GOS at 6 months among TBI patients. METHODS: The study was a secondary analysis of a randomised clinical trial among TBI patients (MRC CRASH Trial). A Spearman correlation was estimated to evaluate the association between the OHS and GOS. The validity of different dichotomies of the OHS for predicting GOS at 6 months was assessed by calculating sensitivity, specificity and the C statistic. Uni and multivariate logistic regression models were fitted including OHS as explanatory variable. For each model we analysed its discrimination and calibration. RESULTS: We found that the OHS is highly correlated with GOS at 6 months (spearman correlation 0.75) with evidence of a linear relationship between the two scales. The OHS dichotomy that separates patients with severe dependency or death showed the greatest discrimination (C statistic: 84.3). Among survivors at hospital discharge the OHS showed a very good discrimination (C statistic 0.78) and excellent calibration when used to predict GOS outcome at 6 months. CONCLUSION: We have shown that the OHS, a simple disability scale available at hospital discharge can predict disability accurately, according to the GOS, at 6 months. OHS could be used to improve the design and analysis of clinical trials in TBI patients and may also provide a valuable clinical tool for physicians to improve communication with patients and relatives when assessing a patient's prognosis at hospital discharge