Renal crystal deposits and histopathology in patients with cystine stones

We have biopsied the papillae of patients who have cystine stones asking if this stone type is associated with specific tissue changes. We studied seven cystine stone formers (SF) treated with percutaneous nephrolithotomy using digital video imaging of renal papillae for mapping and obtained papillary biopsies. Biopsies were analyzed by routine light and electron microscopy, infrared spectroscopy, electron diffraction, and micro-CT. Many ducts of Bellini (BD) had an enlarged ostium, and all such were plugged with cystine crystals, and had injured or absent lining cells with a surrounding interstitium that was inflamed to fibrotic. Crystal plugs often projected into the urinary space. Many inner medullary collecting ducts (IMCD) were dilated with or without crystal plugging. Apatite crystals were identified in the lumens of loops of Henle and IMCD. Abundance of interstitial Randall's plaque was equivalent in amount to that of non-SF. In the cortex, glomerular obsolescence and interstitial fibrosis exceeded normal. Cystine crystallizes in BD with the probable result of cell injury, interstitial reaction, nephron obstruction, and with the potential of inducing cortical change and loss of IMCD tubular fluid pH regulation, resulting in apatite formation. The pattern of IMCD dilation, and loss of medullary structures is most compatible with such obstruction, either from BD lumen plugs or urinary tract obstruction from stones themselves

Highly-parallelized simulation of a pixelated LArTPC on a GPU

The rapid development of general-purpose computing on graphics processing units (GPGPU) is allowing the implementation of highly-parallelized Monte Carlo simulation chains for particle physics experiments. This technique is particularly suitable for the simulation of a pixelated charge readout for time projection chambers, given the large number of channels that this technology employs. Here we present the first implementation of a full microphysical simulator of a liquid argon time projection chamber (LArTPC) equipped with light readout and pixelated charge readout, developed for the DUNE Near Detector. The software is implemented with an end-to-end set of GPU-optimized algorithms. The algorithms have been written in Python and translated into CUDA kernels using Numba, a just-in-time compiler for a subset of Python and NumPy instructions. The GPU implementation achieves a speed up of four orders of magnitude compared with the equivalent CPU version. The simulation of the current induced on 10^3 pixels takes around 1 ms on the GPU, compared with approximately 10 s on the CPU. The results of the simulation are compared against data from a pixel-readout LArTPC prototype

Report of the SUGRA Working Group for Run II of the Tevatron

We present an analysis of the discovery reach for supersymmetric particles at the upgraded Tevatron collider, assuming that SUSY breaking results in universal soft breaking parameters at the grand unification scale, and that the lightest supersymmetric particle is stable and neutral. We first present a review of the literature, including the issues of unification, renormalization group evolution of the supersymmetry breaking parameters and the effect of radiative corrections on the effective low energy couplings and masses of the theory. We consider the experimental bounds coming from direct searches and those arising indirectly from precision data, cosmology and the requirement of vacuum stability. The issues of flavor and CP-violation are also addressed. The main subject of this study is to update sparticle production cross sections, make improved estimates of backgrounds, delineate the discovery reach in the supergravity framework, and examine how this might vary when assumptions about universality of soft breaking parameters are relaxed. With 30 fb$^{-1}$ luminosity and one detector, charginos and neutralinos, as well as third generation squarks, can be seen if their masses are not larger than 200-250 GeV, while first and second generation squarks and gluinos can be discovered if their masses do not significantly exceed 400 GeV. We conclude that there are important and exciting physics opportunities at the Tevatron collider, which will be significantly enhanced by continued Tevatron operation beyond the first phase of Run II.We present an analysis of the discovery reach for supersymmetric particles at the upgraded Tevatron collider, assuming that SUSY breaking results in universal soft breaking parameters at the grand unification scale, and that the lightest supersymmetric particle is stable and neutral. We first present a review of the literature, including the issues of unification, renormalization group evolution of the supersymmetry breaking parameters and the effect of radiative corrections on the effective low energy couplings and masses of the theory. We consider the experimental bounds coming from direct searches and those arising indirectly from precision data, cosmology and the requirement of vacuum stability. The issues of flavor and CP-violation are also addressed. The main subject of this study is to update sparticle production cross sections, make improved estimates of backgrounds, delineate the discovery reach in the supergravity framework, and examine how this might vary when assumptions about universality of soft breaking parameters are relaxed. With 30 fb$^{-1}$ luminosity and one detector, charginos and neutralinos, as well as third generation squarks, can be seen if their masses are not larger than 200-250 GeV, while first and second generation squarks and gluinos can be discovered if their masses do not significantly exceed 400 GeV. We conclude that there are important and exciting physics opportunities at the Tevatron collider, which will be significantly enhanced by continued Tevatron operation beyond the first phase of Run II