Mobile genetic elements in Clostridium difficile and their role in genome function.

Approximately 11% the Clostridium difficile genome is made up of mobile genetic elements which have a profound effect on the biology of the organism. This includes transfer of antibiotic resistance and other factors that allow the organism to survive challenging environments, modulation of toxin gene expression, transfer of the toxin genes themselves and the conversion of non-toxigenic strains to toxin producers. Mobile genetic elements have also been adapted by investigators to probe the biology of the organism and the various ways in which these have been used are reviewed

A framework for modeling uncertainty in regional climate change

In this study, we present a new modeling framework and a large ensemble of climate projections to investigate the uncertainty in regional climate change over the United States (US) associated with four dimensions of uncertainty. The sources of uncertainty considered in this framework are the emissions projections, global climate system parameters, natural variability and model structural uncertainty. The modeling framework revolves around the Massachusetts Institute of Technology (MIT) Integrated Global System Model (IGSM), an integrated assessment model with an Earth System Model of Intermediate Complexity (EMIC) (with a two-dimensional zonal-mean atmosphere). Regional climate change over the US is obtained through a two-pronged approach. First, we use the IGSM-CAM framework, which links the IGSM to the National Center for Atmospheric Research (NCAR) Community Atmosphere Model (CAM). Second, we use a pattern-scaling method that extends the IGSM zonal mean based on climate change patterns from various climate models. Results show that the range of annual mean temperature changes are mainly driven by policy choices and the range of climate sensitivity considered. Meanwhile, the four sources of uncertainty contribute more equally to end-of-century precipitation changes, with natural variability dominating until 2050. For the set of scenarios used in this study, the choice of policy is the largest driver of uncertainty, defined as the range of warming and changes in precipitation, in future projections of climate change over the US

Gyne and drone production in bombus atratus (Hymenoptera: Apidae)

For over a decade, our research group has studied the biology of the native bumblebee, Bombus atratus, to investigate the feasibility of using it to pollinate crops such as tomato, strawberry, blackberry and peppers. Traditionally, captive breeding has depended on the use of captured wild queens to initiate the colonies. The goal of the current work is to investigate conditions required to produce new queens and drones in captivity. In this study, 31 colonies were evaluated under either greenhouse or open field conditions over a 15 month period. A total of 1492 drones (D) and 737 gynes (G, i.e., virgin queens) were produced by all colonies, with 16 colonies producing both drones and gynes (D&G), 11 producing only drones (D) and 4 producing neither. Some of the D&G colonies had more than one sexual phase, but no colonies produced exclusively gynes. More drones and fewer gynes were produced per colony under greenhouse conditions with the highest number of drones produced by D&G colonies. The numbers of immature stages per cell declined in colonies as increasingly more resources were allocated to the production of gynes and the maintenance of increased nest temperature

Self-heterodyned detection of dressed state coherences in helium by noncollinear extreme ultraviolet wave mixing with attosecond pulses

Noncollinear wave-mixing spectroscopies with attosecond extreme ultraviolet (XUV) pulses provide unprecedented insight into electronic dynamics. In infrared and visible regimes, heterodyne detection techniques utilize a reference field to amplify wave-mixing signals while simultaneously allowing for phase-sensitive measurements. Here, we implement a self-heterodyned detection scheme in noncollinear wave-mixing measurements with a short attosecond XUV pulse train and two few-cycle near infrared (NIR) pulses. The initial spatiotemporally overlapped XUV and NIR pulses generate a coherence of both odd (1snp) and even (1sns and 1snd) parity states within gaseous helium. A variably delayed noncollinear NIR pulse generates angularly-dependent four-wave mixing signals that report on the evolution of this coherence. The diffuse angular structure of the XUV harmonics underlying these emission signals is used as a reference field for heterodyne detection, leading to cycle oscillations in the transient wave-mixing spectra. With this detection scheme, wave-mixing signals emitting from at least eight distinct light-induced, or dressed, states can be observed, in contrast to only one light induced state identified in a similar homodyne wave-mixing measurement. In conjunction with the self-heterodyned detection scheme, the noncollinear geometry permits the conclusive identification and angular separation of distinct wave-mixing pathways, reducing the complexity of transient spectra. These results demonstrate that the application of heterodyne detection schemes can provide signal amplification and phase-sensitivity, while maintaining the versatility and selectivity of noncollinear attosecond XUV wave-mixing spectroscopies. These techniques will be important tools in the study of ultrafast dynamics within complex chemical systems in the XUV regime

An Improvement Study of the Decomposition-based Algorithm Global WASF-GA for Evolutionary Multiobjective Optimization

The convergence and the diversity of the decompositionbased evolutionary algorithm Global WASF-GA (GWASF-GA) relies on a set of weight vectors that determine the search directions for new non-dominated solutions in the objective space. Although using weight vectors whose search directions are widely distributed may lead to a well-diversified approximation of the Pareto front (PF), this may not be enough to obtain a good approximation for complicated PFs (discontinuous, non-convex, etc.). Thus, we propose to dynamically adjust the weight vectors once GWASF-GA has been run for a certain number of generations. This adjustment is aimed at re-calculating some of the weight vectors, so that search directions pointing to overcrowded regions of the PF are redirected toward parts with a lack of solutions that may be hard to be approximated. We test different parameters settings of the dynamic adjustment in optimization problems with three, five, and six objectives, concluding that GWASF-GA performs better when adjusting the weight vectors dynamically than without applying the adjustment.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Non-Pauli Effects from Noncommutative Spacetimes

Noncommutative spacetimes lead to nonlocal quantum field theories (qft's) where spin-statistics theorems cannot be proved. For this reason, and also backed by detailed arguments, it has been suggested that they get corrected on such spacetimes leading to small violations of the Pauli principle. In a recent paper \cite{Pauli}, Pauli-forbidden transitions from spacetime noncommutativity were calculated and confronted with experiments. Here we give details of the computation missing from this paper. The latter was based on a spacetime $\mathcal{B}_{\chi\vec{n}}$ different from the Moyal plane. We argue that it quantizes time in units of $\chi$. Energy is then conserved only mod $\frac{2\pi}{\chi}$. Issues related to superselection rules raised by non-Pauli effects are also discussed in a preliminary manner.Comment: 15 Pages, 1 Table, Full details and further developments of arXiv:1003.2250. This version is close to the one accepted by JHE

HTR4 gene structure and altered expression in the developing lung

Background: Meta-analyses of genome-wide association studies (GWAS) have identified single nucleotide polymorphisms (SNPs) spanning the 5-hydroxytryptamine receptor 4 (5-HT4R) gene (HTR4) associated with lung function. The aims of this study were to i) investigate the expression profile of HTR4 in adult and fetal lung tissue and cultured airway cells, ii) further define HTR4 gene structure and iii) explore the potential functional implications of key SNPs using a bioinformatic approach

Electrodialytic processes in solid matrices. New insights into batteries recycling. A review.

Electrodialytic Remediation has been widely applied to the recovery of different contaminants from numerous solid matrices solving emerging issues of environmental concern. Results and conclusions reported in studies about real contaminated matrices are summarizes in this work. The influence of the pH value on the treatment effectiveness has been widely proved highlighting the phenomenon “water splitting” in the membrane surface. This dissociation of water molecules is related to the “limiting current” which is desirable to be exceed at the Anion Exchange Membrane in order to produce the entering of protons toward solid matrix. Other important parameters for the optimization of the technique, such as the current density and the liquid to solid ratio, are also discussed through the revision of studies using real solid matrices. This work also focusses on the pioneer proposal of electrokinetic technologies for the recycling of lithium ion batteries considering the relevance of waste properties in the design and optimization of the technique. From a thorough literature revision, it could be concluded that further experimental results are needed to allow an optimal application of the technique to the rising problem of residues from batteries. The main aim of this work is to take the first steps in the recovery of valuable metals from spent batteries, such as Li and Co, incorporating principles of green chemistry.The authors acknowledge the financial support from the “Plan Propio de Investigación de la Universidad de Málaga with Project numbers: PPIT.UMA.B1.2017/20 and PPIT.UMA.B5.2018/17 and the European project THROUGH H2020-MSCA-RISE- 2017-778045. The first author also acknowledge the postdoctoral contract obtained from University of Malaga