Greenbug resistance in barley landraces from Uzbekistan

Background. The greenbug (Sсhizaphis graminum Rondani) can significantly reduce the yield of barley and other cereals in the southern regions of Russia. Cultivation of resistant varieties can significantly limit the pathogen’s harmfulness. At the same time, specific interaction with the genotypes of the host plant, characteristic of S. graminum, requires a continuous search for new resistance donors to broaden the genetic diversity of barley cultivars. Materials and methods. The resistance of 178 accessions of barley landraces from Uzbekistan to the Krasnodar greenbug population was tested in laboratory experiments. Juvenile plants were infested with aphids of different ages, and when the susceptible control died (cv. ‘Belogorsky’), resistance was assessed on a 0 to 10 (plant death) rating scale. Plants with a damage rate of 1–4 points (up to 30% of the leaf surface being damaged) belonged to the resistant class; damage rate of 5–8 points indicated moderate resistance of plants, and that of 9–10 meant susceptibility. In addition, we assessed the aphid damage of the winter barley cultivar ‘Post’, protected by the previously identified resistance gene Rsg1.Results and conclusions. We identified 52 barley accessions as heterogeneous for the studied trait. In six accessions, plants with high (points 3 to 4) and moderate (5 to 8) resistance were identified; 6 accessions were differentiated into 3 phenotypic classes: resistant, moderately resistant, and susceptible; and in 40 accessions the manifestation of the resistance component varied within 5 to 7 points (from 31 to 60% of the leaf surface being damaged). The distinctly expressed resistance of 12 accessions is controlled by alleles of resistance genes that differ from Rsg1. After selection for resistance, the identified accessions can be used in breeding

Active integrated antennas and arrays with field-effect transistors

Electromagnetic wave generation processes in the hybrid log-periodic microstripe antenna on the dielectric substrate integrated with field-effect transistor are experimentally studied in the frequency range of 6─20 GHz. The possibility of synchronization and power combining in the array consisting of antenna-coupled oscillators placed on the common dielectric substrate is investigated. It is shown that the considerable increasing the generation efficiency and power combining can be obtained by using the external synchronization signal or quasi-optical design of the array

Combined Matrix-Isolation Infrared and Theoretical DFT and ab Initio Study of the Nonionized Valine Conformers

We present results of the first experimental observation of the nonionized natural amino acid valine. The study has employed the matrix-isolation IR spectroscopy and the density functional theory (DFT) and ab initio calculations. In the calculations geometries of nine low-energy valine conformers were optimized using the DFT method with the B3LYP parametrization and the 6-31++G** basis set. Additionally, the relative energies of the conformers were calculated at the MP2/6-31++G** level. The harmonic frequencies and IR intensities were calculated for all the minima found. These data were used to separate and assign the bands of the valine conformers in the experimental spectra. We found that two valine conformers are present in the Ar matrix: one with a bifurcated NH 2 ‚‚‚OdC H-bond (conformer Ia) and one with a N‚‚‚H-O H-bond (conformer IIa). A trace amount of a third valine conformer with NH 2 ‚‚‚O-C H-bond (conformer IIIb) was also detected. The conformational composition of the matrix-deposited nonionized valine was determined on the basis of observed and predicted IR intensities of the bands of different conformers. The composition is ∼94% of conformer Ia, ∼5% of conformer IIa, and less than 2% of conformer IIIb. The presence of three valine conformers in the Ar matrix results in broadening and/or in multiplex structures of some bands in the valine IR spectrum. Common features in the IR spectra of some nonionized natural aliphatic amino acids are discussed

Diversity of barley accessions from the Asian part of Russia in greenbug resistance

Background. The use of barley cultivars resistant to greenbug (Schizaphis graminum Rondani) is an effective, economical and ecology-friendly way to control the dangerous phytophage. The insect is able to overcome the resistance of the host plant, which necessitates a relentless search for new genes to ensure reliable protection of barley fields from the pest.Materials and methods. Resistance to the Krasnodar greenbug population was assessed in 345 barley accessions from the Asian part of Russia. Besides, resistance to S. graminum was studied in cv. ‘Post’ (carrier of the Rsg1 gene), a pure line derived from cv. ‘Onokhoisky’ (k-16626, Buryatia) heterogeneous for this trait, and landraces from Mongolia (k-3885, k-3904, and k-4080). Juvenile plants were infested with aphids in the laboratory, and when a susceptible control died, the damage to experimental barley accessions was assessed using a scoring scale. Genetic control of greenbug resistance in the line derived from cv. ‘Onokhoisky’ was studied using the insect’s test clones and an analysis of the segregation in F2 hybrids from crossing the resistant line with cv. ‘Belogorsky’ susceptible to the aphid, when the plants were infested with the Krasnodar population of the phytophage and with clones of S. graminum.Results and conclusions. We identified 7 accessions heterogeneous for aphid resistance. Among them, plants with a high level of greenbug resistance were found in three landraces from Tuva (k-14714, k-14718, and k-14733). Resistance was also clearly expressed in the line derived from cv. ‘Onokhoisky’. This cultivar is protected by a dominant allele that differs from the previously identified Rsg1, as well as from the alleles found in Mongolian landraces k-3904, k-4080, and k-3885. ‘Onokhoisky’ also has genes with low expressivity, which manifest themselves when the main gene for resistance to S. graminum appears ineffective

57Co Production using RbCl/RbCl/58Ni Target Stacks at the Los Alamos Isotope Production Facility: LA-UR-14-22122

Introduction The Los Alamos Isotope Production Program commonly irradiates target stacks consisting of high, medium and low-energy targets in the “A-”, “B-”, and “C-slots”, respectively, with a 100MeV proton beam. The Program has recently considered the production of 57Co (t1/2 = 271.74 d, 100% EC) from 58Ni using the low-energy posi-tion of the Isotope Production Facility, down-stream of two RbCl salt targets. Initial MCNPX/ CINDER’90 studies predicted 57Co radioisotopic purities >90% depending on time allotted for decay. But these studies do not account for broadening of the proton beam’s energy distribution caused by density changes in molten, potentially boiling RbCl targets upstream of the 58Ni (see e.g., [1]). During a typical production with 230 µA average proton intensity, the RbCl targets’ temperature is expected to produce beam energy changes of several MeV and commensurate effects on the yield and purity of any radioisotope irradiated in the low-energy posi-tion of the target stack. An experiment was designed to investigate both the potential for 57Co’s large-scale production and the 2-dimensional proton beam energy distribution. Material and Methods Two aluminum targets holders were fabricated to each contain 31 58Ni discs (99.48%, Isoflex, CA), 4.76 mm (Φ) x 0.127 mm (thickness). Each foil was indexed with a unique cut pattern by EDM with a 0.254 mm brass wire to allow their position in the target to be tracked through hot cell disassembly and assay (see FIG. 1). Brass residue from EDM was removed with HNO3/HCl solution. The holders’ front windows were 2.87 and 1.37 mm thick, corresponding to predicted average incident energies of 17.9 and 24.8 MeV on the Ni [2]. Each target was irradiated with protons for 1 h with an average beam current of 218 ± 3 µA to ensure an upstream RbCl target temperature and density that would mimic routine production. Following irradiation, targets were disassembled and each disc was assayed by HPGe γ-spectroscopy. Residuals 56Co (t1/2 = 77.2 d, 100% EC) and 57Co have inversely varying measured nuclear formation cross sections between approximately 15 and 40 MeV. Results and Conclusion Distributions of 56,57,58,60Co were tracked as described in both irradiated targets. The distribution of activities matched expectations, with radioisotopes produced by proton interactions with the 58Ni target (56Co and 57Co) concentrated in the area struck by IPF’s rastered, annulus-shaped proton beam, and the distribution of radioisotopes produced by neutron-induced reactions (58Co and 60Co) relatively uniform across all irradiated foils. The potential range of such temperature variations predicted by thermal modeling (approx. ± 200 °C) corre-sponds to a density variation of nearly 0.2 g.cm−3, and a change in the average energy of protons incident on the low-energy “C-slot” of approximately 5 MeV, well-matched to the indi-rectly measured energy variation plotted in FIG. 3. No energy distribution in the plane per-pendicular to the beam axis has previously been assumed in the design of IPF targets. The effective incident energy measured by yields of 57Co and 56Co is, however, almost 5 MeV higher than those predicted using Anderson and Ziegler’s well-known formalism [2]. This discrepancy is supported by previous reports [3] and likely exacerbated compared to these reports by the large magnitude of energy degradation (from 100 MeV down to 30 MeV) in the IPF target stack. For more detailed discussion, refer to Marus et al.’s abstract, also reported at this meeting. While the experiments reported do confirm the potential for many Ci-scale yields of 57Co from months-long irradiations at the IPF, the level radioisotopic impurities 56Co and 58Co are concerning. Commercial radioisotope producers using U-150 (23 MeV) and RIC-14 (14 MeV) cyclotrons in Obninsk, Russia specify 56/58Co activities at levels <0.2% of available 57C

Structural variability of sunflower gene for methionine-rich albumin SFA8

Background. The 2S albumins of sunflower and other oilseed plants possess a high nutritional quality, the defense activity against fungi diseases casual gents and also valuable functional properties. The major component of albumin fraction, the SFA8 protein consists of 103 amino acid residues among which methionine constitutes 15 Mole %. In the cultivated sunflower gene pool the SFA8 structural gene is represented by the two alleles the products of which have different isoelectric points and differ by the electrophoretic mobility, however molecular mechanisms of the polymorphism are still unknown. Results. The amplified sequences of the SFA8 gene from seven Helianthus annuus L. accessions and three accessions of wild Helianthus L. species from VIR collection were sequences. The intron of 258-303 bp length depending on the genotype was firstly found in the central part of the gene. The length of the first exon constitutes 99 bp, the second exon is of 210 bp length. The nucleotide and translated amino acid sequences are polymorphic among different genotypes. The line VIR 130 in which the two expressing SFA8 proteins, the normal polypeptide with isoelectric point (pI) approximately 6.0 (normal SFA8) and its allelic variant with pI 6.5 (variant SFA8) have been earlier revealed possesses two types of the SFA8 encoding sequence. In one sequence the substitution 108С—G is present that results in the substitution of the polar uncharged amino acid serine for the positively charged arginine and respectively in alteration of the protein charge and isoelectric point. The intron sequence is also polymorphic and characterized by the presence of indels of approximately 45 bp. The intron sequences of all accessions contain dinucleotides GT at the 5΄ end and AG at the 3΄ end which are characteristic for consensus sequences of splicing sites in the U2-type introns. The variants of the secondary structure of the SFA8 intron sequences of H. argophyllus Torr. &amp; A. Gray and all the analyzed H. annuus genotypes are similar and differ from those of H. petiolaris Nutt. and H. giganteus L. Conclusions. The data on the SFA8 gene sequence polymorphism are important understanding the molecular mechanisms of genotypic differences in biochemical and functional properties of the protein, and he revealed differences in the intron secondary structure can be important for understanding expression patterns of the protein

Charged-Particle Multiplicity in Proton-Proton Collisions

This article summarizes and critically reviews measurements of charged-particle multiplicity distributions and pseudorapidity densities in p+p(pbar) collisions between sqrt(s) = 23.6 GeV and sqrt(s) = 1.8 TeV. Related theoretical concepts are briefly introduced. Moments of multiplicity distributions are presented as a function of sqrt(s). Feynman scaling, KNO scaling, as well as the description of multiplicity distributions with a single negative binomial distribution and with combinations of two or more negative binomial distributions are discussed. Moreover, similarities between the energy dependence of charged-particle multiplicities in p+p(pbar) and e+e- collisions are studied. Finally, various predictions for pseudorapidity densities, average multiplicities in full phase space, and multiplicity distributions of charged particles in p+p(pbar) collisions at the LHC energies of sqrt(s) = 7 TeV, 10 TeV, and 14 TeV are summarized and compared.Comment: Invited review for Journal of Physics G -- version 2: version after referee's comment

Matrix-Isolation Infrared and Theoretical Studies of the Glycine Conformers

The IR spectra of nonionized glycine and its deuterated derivatives isolated in the low-temperature argon matrices have been measured, and for the first time the infrared spectral characteristics of the three most stable conformers have been determined and assigned. Correlated level ab initio and density functional theory (DFT) calculations of IR frequencies and intensities with extended basis sets were performed and their results were employed to separate the bands of the glycine conformers in the experimental spectra and to assist the assignment. The intramolecular interconversion, conformer III w conformer I, which is observed in the matrices at temperatures higher than 13 K, was found to cause a significant decrease of the band intensities of conformer III in the spectra. This phenomenon was used to distinguish the vibrational bands of this conformer from the bands of the other conformers. The reliability of the Møller-Plesset second-order perturbation theory (MP2) method and the DFT method with the three-parameter density functional, Becke3LYP, in the prediction of the IR spectra of the nonionized glycine conformers was examined. We found that the DFT/Becke3LYP method with aug-cc-pVDZ basis set yields vibrational frequencies of the glycine conformers very similar to the MP2 results. Both DFT and MP2 results are in the excellent agreement with the experimental data

A multi-pronged approach targeting SARS-CoV-2 proteins using ultra-large virtual screening.

The unparalleled global effort to combat the continuing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic over the last year has resulted in promising prophylactic measures. However, a need still exists for cheap, effective therapeutics, and targeting multiple points in the viral life cycle could help tackle the current, as well as future, coronaviruses. Here, we leverage our recently developed, ultra-large-scale in silico screening platform, VirtualFlow, to search for inhibitors that target SARS-CoV-2. In this unprecedented structure-based virtual campaign, we screened roughly 1 billion molecules against each of 40 different target sites on 17 different potential viral and host targets. In addition to targeting the active sites of viral enzymes, we also targeted critical auxiliary sites such as functionally important protein-protein interactions