Exact two-time correlation and response functions in the one-dimensional coagulation-diffusion process by the empty-interval-particle method

The one-dimensional coagulation-diffusion process describes the strongly fluctuating dynamics of particles, freely hopping between the nearest-neighbour sites of a chain such that one of them disappears with probability 1 if two particles meet. The exact two-time correlation and response function in the one-dimensional coagulation-diffusion process are derived from the empty-interval-particle method. The main quantity is the conditional probability of finding an empty interval of n consecutive sites, if at distance d a site is occupied by a particle. Closed equations of motion are derived such that the probabilities needed for the calculation of correlators and responses, respectively, are distinguished by different initial and boundary conditions. In this way, the dynamical scaling of these two-time observables is analysed in the longtime ageing regime. A new generalised fluctuation-dissipation ratio with an universal and finite limit is proposed.Comment: 31 pages, submitted to J.Stat.Mec

Spatial clustering of interacting bugs: Levy flights versus Gaussian jumps

A biological competition model where the individuals of the same species perform a two-dimensional Markovian continuous-time random walk and undergo reproduction and death is studied. The competition is introduced through the assumption that the reproduction rate depends on the crowding in the neighborhood. The spatial dynamics corresponds either to normal diffusion characterized by Gaussian jumps or to superdiffusion characterized by L\'evy flights. It is observed that in both cases periodic patterns occur for appropriate parameters of the model, indicating that the general macroscopic collective behavior of the system is more strongly influenced by the competition for the resources than by the type of spatial dynamics. However, some differences arise that are discussed.Comment: This version incorporates in the text the correction published as an Erratum in Europhysics Letters (EPL) 95, 69902 (2011) [doi: 10.1209/0295-5075/95/69902

Aging processes in reversible reaction-diffusion systems: Monte Carlo simulations

Reaction-diffusion systems with reversible reactions generically display power-law relaxation towards chemical equilibrium. In this work we investigate through numerical simulations aging processes that characterize the non-equilibrium relaxation. Studying a model which excludes multiple occupancy of a site, we find that the scaling behavior of the two-time correlation and response functions are similar to that discovered previously in an exactly solvable version with no restrictions on the occupation numbers. Especially, we find that the scaling of the response depends on whether the perturbation conserves a certain quantity or not. Our results point to a high degree of universality in relaxation processes taking place in diffusion-limited systems with reversible reactions.Comment: 12 pages, 4 figures included, accepted for publication in JSTA

Conformal symmetry in non-local field theories

We have shown that a particular class of non-local free field theory has conformal symmetry in arbitrary dimensions. Using the local field theory counterpart of this class, we have found the Noether currents and Ward identities of the translation, rotation and scale symmetries. The operator product expansion of the energy-momentum tensor with quasi-primary fields is also investigated.Comment: 15 pages, V2 (Some references added) V3(published version

Interacting Brownian Motion with Resetting

We study two Brownian particles in dimension $d=1$, diffusing under an interacting resetting mechanism to a fixed position. The particles are subject to a constant drift, which biases the Brownian particles toward each other. We derive the steady-state distributions and study the late time relaxation behavior to the stationary state.Comment: 13 pages, 4 figure

Diffusion under time-dependent resetting

We study a Brownian particle diffusing under a time-modulated stochastic resetting mechanism to a fixed position. The rate of resetting r(t) is a function of the time t since the last reset event. We derive a sufficient condition on r(t) for a steady-state probability distribution of the position of the particle to exist. We derive the form of the steady-state distributions under some particular choices of r(t) and also consider the late time relaxation behavior of the probability distribution. Finally we consider first passage time properties for the Brownian particle to reach the origin and derive a formula for the mean first passage time. We study optimal properties of the mean first passage time and show that a threshold function is at least locally optimal for the problem of minimizing the mean first passage time.Comment: 15 pages, 4 figure

Run and tumble particle under resetting:a renewal approach

We consider a particle undergoing run and tumble dynamics, in which its velocity stochastically reverses, in one dimension. We study the addition of a Poissonian resetting process occurring with rate $r$. At a reset event the particle's position is returned to the resetting site $X_r$ and the particle's velocity is reversed with probability $\eta$. The case $\eta = 1/2$ corresponds to position resetting and velocity randomization whereas $\eta =0$ corresponds to position-only resetting. We show that, beginning from symmetric initial conditions, the stationary state does not depend on $\eta$ i.e. it is independent of the velocity resetting protocol. However, in the presence of an absorbing boundary at the origin, the survival probability and mean time to absorption do depend on the velocity resetting protocol. Using a renewal equation approach, we show that the the mean time to absorption is always less for velocity randomization than for position-only resetting.Comment: 16 pages, 1 figure, version accepted in Journal of Physics

A mini-review of the diffusion dynamics of DNA-binding proteins: experiments and models

In the course of various biological processes, specific DNA-binding proteins must efficiently find a particular target sequence/protein or a damaged site on the DNA. DNA-binding proteins perform this task based on diffusion. Nevertheless, investigations over recent decades have found that the diffusion dynamics of DNA-binding proteins are generally complicated and, further, protein specific. In this review, we collect experimental and theoretical studies that quantify the diffusion dynamics of DNA-binding proteins and review them from the viewpoint of diffusion processes.11Nsciescopu