20 research outputs found
Is It Possible To Obtain Coupled Cluster Quality Energies at near Density Functional Theory Cost? Domain-Based Local Pair Natural Orbital Coupled Cluster vs Modern Density Functional Theory
The
recently developed domain-based local pair natural orbital
coupled cluster theory with single, double, and perturbative triple
excitations (DLPNO-CCSDÂ(T)) delivers results that are closely approaching
those of the parent canonical coupled cluster method at a small fraction
of the computational cost. A recent extended benchmark study established
that, depending on the three main truncation thresholds, it is possible
to approach the canonical CCSDÂ(T) results within 1 kJ (default setting,
TightPNO), 1 kcal/mol (default setting, NormalPNO), and 2â3
kcal (default setting, LoosePNO). Although thresholds for calculations
with TightPNO are 2â4 times slower than those based on NormalPNO
thresholds, they are still many orders of magnitude faster than canonical
CCSDÂ(T) calculations, even for small and medium sized molecules where
there is little locality. The computational effort for the coupled
cluster step scales nearly linearly with system size. Since, in many
instances, the coupled cluster step in DLPNO-CCSDÂ(T) is cheaper or
at least not much more expensive than the preceding HartreeâFock
calculation, it is useful to compare the method against modern density
functional theory (DFT), which requires an effort comparable to that
of HartreeâFock theory (at least if HartreeâFock exchange
is part of the functional definition). Double hybrid density functionals
(DHDFâs) even require a MP2-like step. The purpose of this
article is to evaluate the cost vs accuracy ratio of DLPNO-CCSDÂ(T)
against modern DFT (including the PBE, B3LYP, M06-2X, B2PLYP, and
B2GP-PLYP functionals and, where applicable, their van der Waals corrected
counterparts). To eliminate any possible bias in favor of DLPNO-CCSDÂ(T),
we have chosen established benchmark sets that were specifically proposed
for evaluating DFT functionals. It is demonstrated that DLPNO-CCSDÂ(T)
with any of the three default thresholds is more accurate than any
of the DFT functionals. Furthermore, using the aug-cc-pVTZ basis set
and the LoosePNO default settings, DLPNO-CCSDÂ(T) is only about 1.2
times slower than B3LYP. With NormalPNO thresholds, DLPNO-CCSDÂ(T)
is about a factor of 2 slower than B3LYP and shows a mean absolute
deviation of less than 1 kcal/mol to the reference values for the
four different data sets used. Our conclusion is that coupled cluster
energies can indeed be obtained at near DFT cost
Domain Based Pair Natural Orbital Coupled Cluster Studies on Linear and Folded Alkane Chains
In
this study the question of what is the last unbranched alkane
that prefers a linear conformation over a folded one is revisited
from a theoretical point of view. Geometries have been optimized carefully
using the most accurate theoretical approach available to date for
such systems, namely, doubly hybrid density functional theory in conjunction
with larger quadruple-ζ quality basis sets. The resulting geometries
deviate significantly from previously reported ones and have a significant
impact on the predicted energetics. Electronic energies were calculated
using the efficient and accurate domain local pair natural orbital
coupled cluster method with single-, double-, and triple substitutions
(DLPNO-CCSDÂ(T)) electronic structure method. Owing to the methodâs
efficiency, we were able to employ up to quadruple-ζ quality
basis sets for all hydrocarbons up to C<sub>19</sub>H<sub>40</sub>. In conjunction with carefully designed basis set extrapolation
techniques, it is estimated that the electronic energies reported
in this study deviate less than 1 kJ/mol from the canonical CCSDÂ(T)
basis set limit. Thermodynamic corrections were calculated with the
PW6B95-D3 functional and the def2-QZVP basis set. Our prediction is
that the last linear conformer is either C<sub>16</sub>H<sub>34</sub> or C<sub>17</sub>H<sub>36</sub> with the latter being more probable.
C<sub>18</sub>H<sub>38</sub> can be safely ruled out as the most stable
isomer at 100 K. These findings are in agreement with the elegant
experimental studies of Suhm and co-workers. Deviations between the
current and previous theoretical results are analyzed in detail
Is It Possible To Obtain Coupled Cluster Quality Energies at near Density Functional Theory Cost? Domain-Based Local Pair Natural Orbital Coupled Cluster vs Modern Density Functional Theory
The
recently developed domain-based local pair natural orbital
coupled cluster theory with single, double, and perturbative triple
excitations (DLPNO-CCSDÂ(T)) delivers results that are closely approaching
those of the parent canonical coupled cluster method at a small fraction
of the computational cost. A recent extended benchmark study established
that, depending on the three main truncation thresholds, it is possible
to approach the canonical CCSDÂ(T) results within 1 kJ (default setting,
TightPNO), 1 kcal/mol (default setting, NormalPNO), and 2â3
kcal (default setting, LoosePNO). Although thresholds for calculations
with TightPNO are 2â4 times slower than those based on NormalPNO
thresholds, they are still many orders of magnitude faster than canonical
CCSDÂ(T) calculations, even for small and medium sized molecules where
there is little locality. The computational effort for the coupled
cluster step scales nearly linearly with system size. Since, in many
instances, the coupled cluster step in DLPNO-CCSDÂ(T) is cheaper or
at least not much more expensive than the preceding HartreeâFock
calculation, it is useful to compare the method against modern density
functional theory (DFT), which requires an effort comparable to that
of HartreeâFock theory (at least if HartreeâFock exchange
is part of the functional definition). Double hybrid density functionals
(DHDFâs) even require a MP2-like step. The purpose of this
article is to evaluate the cost vs accuracy ratio of DLPNO-CCSDÂ(T)
against modern DFT (including the PBE, B3LYP, M06-2X, B2PLYP, and
B2GP-PLYP functionals and, where applicable, their van der Waals corrected
counterparts). To eliminate any possible bias in favor of DLPNO-CCSDÂ(T),
we have chosen established benchmark sets that were specifically proposed
for evaluating DFT functionals. It is demonstrated that DLPNO-CCSDÂ(T)
with any of the three default thresholds is more accurate than any
of the DFT functionals. Furthermore, using the aug-cc-pVTZ basis set
and the LoosePNO default settings, DLPNO-CCSDÂ(T) is only about 1.2
times slower than B3LYP. With NormalPNO thresholds, DLPNO-CCSDÂ(T)
is about a factor of 2 slower than B3LYP and shows a mean absolute
deviation of less than 1 kcal/mol to the reference values for the
four different data sets used. Our conclusion is that coupled cluster
energies can indeed be obtained at near DFT cost
Is It Possible To Obtain Coupled Cluster Quality Energies at near Density Functional Theory Cost? Domain-Based Local Pair Natural Orbital Coupled Cluster vs Modern Density Functional Theory
Improved Correlation Energy Extrapolation Schemes Based on Local Pair Natural Orbital Methods
It is well-known that the basis set limit is difficult
to reach
in correlated post HartreeâFock ab initio calculations. One
possible route forward is to employ basis set extrapolation schemes.
In order to avoid prohibitively expensive calculations, the highest
level calculation (typically based on the âgold standardâ
coupled cluster theory with single, double, and perturbative triple
excitations, CCSDÂ(T)) is only performed with the smallest basis set,
and the remaining basis set incompleteness is estimated at a lower
level of theory, typically second-order MoÌller-Plesset perturbation
theory (MP2). In this work, we provide a comprehensive investigation
of alternative schemes where the MP2 extrapolation is replaced by
the coupled-electron pair approximation, version 1 (CEPA/1) or the
local pair natural orbital version of this method (LPNO-CEPA/1). It
is shown that the MP2 method achieves apparent accuracy only due to
error cancellation. Systematically more accurate results at small
additional computational cost are obtained if the MP2 step is replaced
by LPNO-CEPA/1. The errors of LPNO-CEPA/1 relative to canonical CEPA/1
are negligible. Owing to the highly systematic nature of the deviations
between canonical and LPNO methods, basis set extrapolation reduces
the LPNO errors in the total energies by 1 order of magnitude (âŒ0.2
kcal/mol) and errors in energy differences to essentially zero. Using
the CCSDÂ(T)/LPNO-CEPA/1-based extrapolation scheme, new reference
values are proposed for the recently published S66 set of interaction
energies. The deviations between the new values and the original interactions
energies are mostly very small but reach values up to 0.3 kcal/mol
Sobre el mecanismo de reacciĂłn de la transferencia intermolecular completa de o2 entre los complejos de nĂquel mononuclear y manganeso con ligandos macrocĂclicos
The recently described intermolecular O2 transfer between the side-on Ni-O2 complex [(12-TMC)Ni-O2]+ and the manganese complex [(14-TMC)Mn]2+, where 12-TMC and 14-TMC are 12- and 14-membered macrocyclic ligands, 12-TMC=1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclododecane and 14-TMC=1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane, is studied by means of DFT methods. B3LYP calculations including long-range corrections and solvent effects are performed to elucidate the mechanism. The potential energy surfaces (PESs) compatible with different electronic states of the reactants have been analyzed. The calculations confirm a two-step reaction, with a first rate-determining bimolecular step and predict the exothermic character of the global process. The relative stability of the products and the reverse barrier are in line with the fact that no reverse reaction is experimentally observed. An intermediate with a ÎŒ-η1:η1-O2 coordination and two transition states are identified on the triplet PES, slightly below the corresponding stationary points of the quintet PES, suggesting an intersystem crossing before the first transition state. The calculated activation parameters and the relative energies of the two transition sates and the products are in very good agreement with the experimental data. The calculations suggest that a superoxide anion is transferred during the reaction.La transferencia de O2 intermolecular recientemente descrita entre el complejo Ni-O2 lateral [(12-TMC) Ni-O2] + y el complejo de manganeso [(14-TMC) Mn] 2+, donde 12-TMC y 14-TMC son Ligandos macrocĂclicos de 12 y 14 miembros, 12-TMC = 1,4,7,10-tetrametil-1,4,7,10-tetraazaciclododecano y 14-TMC = 1,4,8,11-tetrametil-1,4 , 8,11-tetraazaciclotetradecano, se estudia mediante mĂ©todos DFT. Los cĂĄlculos de B3LYP que incluyen correcciones de largo alcance y efectos de solventes se realizan para dilucidar el mecanismo. Se han analizado las superficies de energĂa potencial (PES) compatibles con diferentes estados electrĂłnicos de los reactivos. Los cĂĄlculos confirman una reacciĂłn de dos pasos, con un primer paso bimolecular que determina la velocidad y predicen el carĂĄcter exotĂ©rmico del proceso global. La estabilidad relativa de los productos y la barrera inversa estĂĄn en lĂnea con el hecho de que no se observa experimentalmente una reacciĂłn inversa. Se identifica un intermedio con una coordinaciĂłn ÎŒ-η1: η1-O2 y dos estados de transiciĂłn en el triplete PES, ligeramente por debajo de los puntos estacionarios correspondientes del quinteto PES, lo que sugiere un cruce entre sistemas antes del primer estado de transiciĂłn. Los parĂĄmetros de activaciĂłn calculados y las energĂas relativas de los dos estados de transiciĂłn y los productos estĂĄn muy de acuerdo con los datos experimentales. Los cĂĄlculos sugieren que un aniĂłn superĂłxido se transfiere durante la reacciĂłn
Communication: An improved linear scaling perturbative triples correction for the domain based local pair-natural orbital based singles and doubles coupled cluster method [DLPNO-CCSD(T)]
Theoretical Elucidation of a Classic Reaction: Protonation of the Quadruple Bond of the Octachlorodimolybdate(II,II) [Mo<sub>2</sub>Cl<sub>8</sub>]<sup>4â</sup> Anion
The protonation reaction of the unbridged quadruple metalâmetal
bond of [Mo<sub>2</sub>Cl<sub>8</sub>]<sup>4â</sup> anion producing
the triply bonded hydride [Mo<sub>2</sub>(ÎŒ-H)Â(ÎŒ-Cl)<sub>2</sub>Cl<sub>6</sub>]<sup>3â</sup> is studied by accurate
Density Functional Theory computations. The reactant, product, stable
intermediates, and transition states are located on the potential
energy surface. The water solvent is explicitly included in the calculations.
Full reaction profiles are calculated and compared to experimental
data. The mechanism of the reaction is fully elucidated. This involves
two steps. The first is a proton transfer from an oxonium ion to the
quadruple bond, being rate determining. The second, involves the internal
rearrangement of chlorine atoms and is much faster. Activation energies
with a mean value of 19 kcal/mol are calculated, in excellent agreement
with experimental values
Exploring the Accuracy Limits of Local Pair Natural Orbital Coupled-Cluster Theory
The domain based local pair natural
orbital coupled cluster method
with single-, double-, and perturbative triple excitations (DLPNOâCCSDÂ(T))
is an efficient quantum chemical method that allows for coupled cluster
calculations on molecules with hundreds of atoms. Because coupled-cluster
theory is the method of choice if high-accuracy is needed, DLPNOâCCSDÂ(T)
is very promising for large-scale chemical application. However, the
various approximations that have to be introduced in order to reach
near linear scaling also introduce limited deviations from the canonical
results. In the present work, we investigate how far the accuracy
of the DLPNOâCCSDÂ(T) method can be pushed for chemical applications.
We also address the question at which additional computational cost
improvements, relative to the previously established default scheme,
come. To answer these questions, a series of benchmark sets covering
a broad range of quantum chemical applications including reaction
energies, hydrogen bonds, and other noncovalent interactions, conformer
energies, and a prototype organometallic problem were selected. An
accuracy of 1 kcal/mol or better can readily be obtained for all data
sets using the default truncation scheme, which corresponds to the
stated goal of the original implementation. Tightening of the three
thresholds that control DLPNO leads to mean absolute errors and standard
deviations from the canonical results of less than 0.25 kcal/mol (<1
kJ/mol). The price one has then to pay is an increased computational
time by a factor close to 3. The applicability of the method is shown
to be independent of the nature of the reaction. On the basis of the
careful analysis of the results, three different sets of truncation
thresholds (termed âLoosePNOâ, âNormalPNOâ,
and âTightPNOâ) have been chosen for âblack boxâ
use of DLPNOâCCSDÂ(T). This will allow users of the method to
optimally balance performance and accuracy
Electrocardiographic criteria for detecting coronary artery disease in hypertensive patients with ST-segment changes during exercise testing
Purpose: It is well known that patients with arterial hypertension
frequently present with ischemic electrocardiographic changes during
exercise testing without actually having coronary artery disease (CAD).
The purpose of this study was to establish additional
electrocardiographic criteria during exercise testing for detecting CAD
in hypertensive patients with ischemic ST-segment response.
Methods: Three hundred eighty-two consecutive hypertensive patients (224
males, 58 8 years) who presented with ischemic electrocardiographic
changes during exercise testing and agreed to undergo coronary
arteriography were included in the study.
Results: From 382 hypertensive patients undergoing coronary angiography,
only 76 (20%) had significant coronary stenosis, whereas 306 (80%) had
normal coronary arteries. From 382 patients, 287 (75%) (group A)
presented with ST-segment depression during exercise in leads
II-III-aVF-V-6, 271 (94%) of which had normal arteries at the
angiography. The remaining 95 patients (25%) (group 13) of the studied
patients presented with ST-segment depression in II-III-aVF and/or V-4
through V-6, 60 (63%) of which had CAD. Furthermore, 251 patients of
group A presented with ST-segment depression during the fourth to sixth
minute of the recovery period in V-4 through V-6, 247 (98%) of which
had normal arteries. Another 28 patients from group B presented with
ST-segment depression during the fourth to eighth minute of the recovery
period in V-4 through V-6, 22 (79%) of which had significant coronary
artery stenosis.
Conclusions: Hypertensive patients who present with ST-segment
depression during exercise in leads II-III-aVF and/or V-4 through V-6
and with a prolonged duration of this depression at the recovery phase
(fourth to eighth minute) are more likely to have CAD. Absence of
ST-segment depression in V-4 and V-5 at the end of exercise or during
the seventh and eighth minute of recovery favors a false-positive
result. (C) 2009 Elsevier Inc. All rights reserved