Sequence elements controlling expression of Barley stripe mosaic virus subgenomic RNAs in vivo.

Barley stripe mosaic virus (BSMV) contains three positive-sense, single-stranded genomic RNAs, designated alpha, beta, and gamma, that encode seven major proteins and one minor translational readthrough protein. Three proteins (alphaa, betaa, and gammaa) are translated directly from the genomic RNAs and the remaining proteins encoded on RNAbeta and RNAgamma are expressed via three subgenomic messenger RNAs (sgRNAs). sgRNAbeta1 directs synthesis of the triple gene block 1 (TGB1) protein. The TGB2 protein, the TGB2' minor translational readthrough protein, and the TGB3 protein are expressed from sgRNAbeta2, which is present in considerably lower abundance than sgRNAbeta1. A third sgRNA, sgRNAgamma, is required for expression of the gammab protein. We have used deletion analyses and site-specific mutations to define the boundaries of promoter regions that are critical for expression of the BSMV sgRNAs in infected protoplasts. The results reveal that the sgRNAbeta1 promoter encompasses positions -29 to -2 relative to its transcription start site and is adjacent to a cis-acting element required for RNAbeta replication that maps from -107 to -74 relative to the sgRNAbeta1 start site. The core sgRNAbeta2 promoter includes residues -32 to -17 relative to the sgRNAbeta2 transcriptional start site, although maximal activity requires an upstream hexanucleotide sequence residing from positions -64 to -59. The sgRNAgamma promoter maps from -21 to +2 relative to its transcription start site and therefore partially overlaps the gammaa gene. The sgRNAbeta1, beta2, and gamma promoters also differ substantially in sequence, but have similarities to the putative homologous promoters of other Hordeiviruses. These differences are postulated to affect competition for the viral polymerase, coordination of the temporal expression and abundance of the TGB proteins, and constitutive expression of the gammab protein

NITROGEN CYCLING IN A FOREST STREAM DETERMINED BY A 15N TRACER ADDITION

Nitrogen uptake and cycling was examined using a six‐week tracer addition of 15N‐labeled ammonium in early spring in Walker Branch, a first‐order deciduous forest stream in eastern Tennessee. Prior to the 15N addition, standing stocks of N were determined for the major biomass compartments. During and after the addition, 15N was measured in water and in dominant biomass compartments upstream and at several locations downstream. Residence time of ammonium in stream water (5–6 min) and ammonium uptake lengths (23–27 m) were short and relatively constant during the addition. Uptake rates of NH4 were more variable, ranging from 22 to 37 μg N·m−2·min−1 and varying directly with changes in streamwater ammonium concentration (2.7–6.7 μg/L). The highest rates of ammonium uptake per unit area were by the liverwort Porella pinnata, decomposing leaves, and fine benthic organic matter (FBOM), although epilithon had the highest N uptake per unit biomass N. Nitrification rates and nitrate uptake lengths and rates were determined by fitting a nitrification/nitrate uptake model to the longitudinal profiles of 15N‐NO3 flux. Nitrification was an important sink for ammonium in stream water, accounting for 19% of the total ammonium uptake rate. Nitrate production via coupled regeneration/nitrification of organic N was about one‐half as large as nitrification of streamwater ammonium. Nitrate uptake lengths were longer and more variable than those for ammonium, ranging from 101 m to infinity. Nitrate uptake rate varied from 0 to 29 μg·m−2·min−1 and was ∼1.6 times greater than assimilatory ammonium uptake rate early in the tracer addition. A sixfold decline in instream gross primary production rate resulting from a sharp decline in light level with leaf emergence had little effect on ammonium uptake rate but reduced nitrate uptake rate by nearly 70%. At the end of the addition, 64–79% of added 15N was accounted for, either in biomass within the 125‐m stream reach (33–48%) or as export of 15N‐NH4 (4%), 15N‐NO3 (23%), and fine particulate organic matter (4%) from the reach. Much of the 15N not accounted for was probably lost downstream as transport of particulate organic N during a storm midway through the experiment or as dissolved organic N produced within the reach. Turnover rates of a large portion of the 15N taken up by biomass compartments were high (0.04–0.08 per day), although a substantial portion of the 15N in Porella (34%), FBOM (21%), and decomposing wood (17%) at the end of the addition was retained 75 d later, indicating relatively long‐term retention of some N taken up from water. In total, our results showed that ammonium retention and nitrification rates were high in Walker Branch, and that the downstream loss of N was primarily as nitrate and was controlled largely by nitrification, assimilatory demand for N, and availability of ammonium to meet that demand. Our results are consistent with recent 15N tracer experiments in N‐deficient forest soils that showed high rates of nitrification and the importance of nitrate uptake in regulating losses of N. Together these studies demonstrate the importance of 15N tracer experiments for improving our understanding of the complex processes controlling N cycling and loss in ecosystems

Food resources of stream macroinvertebrates determined by natural-abundance stable C and N isotopes and a 15N tracer addition

Trophic relationships were examined using natural-abundance 13C and 15N analyses and a 15N-tracer addition experiment in Walker Branch, a 1st-order forested stream in eastern Tennessee. In the 15N-tracer addition experiment, we added 15NH4, to stream water over a 6-wk period In early spring, and measured 15N:14N ratios in different taxa and biomass compartments over distance and time. Samples collected from a station upstream from the 15N addition provided data on natural-abundance 13C:12C and 15N:14N ratios. The natural-abundance 15N analysis proved to be of limited value in identifying food resources of macroinvertebrates because 15N values were not greatly different among food resources. In general, the natural-abundance stable isotope approach was most useful for determining whether epilithon or detritus were important food resources for organisms that may use both (e.g., the snail Elimia clavaeformis), and to provide corroborative evidence of food resources of taxa for which the 15N tracer results were not definitive. The 15N tracer results showed that the mayflies Stenonema spp. and Baetis spp. assimilated primarily epilithon, although Baetis appeared to assimilate a portion of the epilithon (e.g., algal cells) with more rapid N turnover than the bulk pool sampled. Although Elimia did not reach isotopic equilibrium during the tracer experiment, application of a N-turnover model to the field data suggested that it assimilated a combination of epilithon and detritus. The amphipod Gammarus minus appeared to depend mostly on fine benthic organic matter (FBOM), and the coleopteran Anchytarsus bicolor on epixylon. The caddisfly Diplectrona modesta appeared to assimilate primarily a fast N-turnover portion of the FBOM pool, and Simuliidae a fast N- turnover component of the suspended particulate organic matter pool rather than the bulk pool sampled. Together, the natural-abundance stable C and N isotope analyses and the experimental 15N tracer approach proved to be very useful tools for identifying food resources in this stream ecosystem

Comparison of activity levels measured by a wrist worn accelerometer and direct observation in young children

Peer reviewedPublisher PD

Elevados níveis de chumbo no sangue de crianças que vivem em habitações antigas em Evansville, Indiana: associação entre o ano de construção da casa, níveis de chumbo no solo e níveis de chumbo no sangue de crianças de 1-5 anos, entre 1998 - 2006

A total of 18,218 blood lead levels (BLLs) were assessed. The samples from 11,719 children aged 1-5 years in Evansville, Indiana, were obtained on a volunteer basis between 1998 and 2006. In addition, soil lead levels were also evaluated from 35 residential yards that were matched to the addresses of 81 children.During the study period, both average BLLs and the percentage of elevated BLLs declined. Even so, Evansville’s BLLs still remained higher than national levels (median BLLs of 3.0 vs.1.5 μg/dL, respectively). From our analysis, living in older houses (presumably containing lead paint) was associated with higher BLLs in children. No clear association was found between higher BLLs and gender or residential soil lead levels.En este estudio se evaluaron los niveles de plomo en 18.218 muestras de sangre. Las muestras de 11.719 niños de Evansville, Indiana, de edades comprendidas entre 1 y 5 años se obtuvieron de manera voluntaria entre los años 1998 y 2006. Se evaluaron además los niveles de plomo en el suelo de 35 jardines residenciales correspondientes al domicilio de 81 niños.Durante el periodo de estudio, tanto los niveles de plomo en sangre como el porcentaje de valores elevados para dichos niveles fueron descendiendo. A pesar de ello, los valores de plomo en sangre en Evansville siguieron estando por encima de los nacionales (mediana de niveles de plomo en sangre 3,0 frente a 1,5 μg/dL, respectivamente). Nuestro análisis dio como resultado que vivir en casas antiguas (presumiblemente con pintura que contiene plomo) estaba asociado con niveles más elevados de plomo en sangre en los niños. No se encontró una asociación clara de los niveles elevados de plomo en sangre ni con el género ni con los niveles de plomo en el suelo de los jardines.Neste estudo avaliaram-se os níveis de chumbo em 18.218 amostra de sangue. As amostras de 11.719 crianças de Evansville, Indiana, de idades compreendidas entre 1 e 5 anos obtiveram-se de forma voluntária entre os anos de 1998 e 2006. Avaliaram-se também os níveis de chumbo na terra de 65 jardins residenciais correspondentes ao domicílio de 81 crianças.Durante o período do estudo, tanto a média dos níveis de chumbo no sangue como a percentagem de valores elevados para este indicador foram descendo. No entanto, os níveis de chumbo no sangue em Evansville ficaram acima dos valores nacionais (mediana 3,0 vs 1,5, respetivamente). Da análise dos dados obtidos conclui-se que viver em casas mais antigas (presumivelmente contendo tintas com chumbo) está associado à presença de elevados níveis de chumbo no sangue de crianças. Não há uma associação clara entre os níveis elevados de chumbo no sangue e o sexo, a idade e os níveis de chumbo no solo dos jardins residenciais

Validation of simple epidemiological or clinical methods for the measurement of body composition in young children

The present study aimed to determine the validity of simple epidemiological and clinical methods for the assessment of body fatness in preschool children. In 89 children (42 boys, 47 girls; mean age 4.1 SD 1.3y) measures of body fatness were made using total body water (TBW), dual energy x-ray absorptiometry (DXA), air displacement plethysmography (BODPOD) and skinfold thickness. Methods were compared by Bland–Altman analysis using TBW as the reference method, and by paired comparisons and rank order correlations. Bias for DXA was +1.8% body fat percentage units (limits of agreement +15.5% to -11.9%), bias for BODPOD was -3.5% (limits of agreement +18.9% to -5.9%) and bias for skinfolds using the Slaughter equations was -6.5% (limits of agreement +10.0% to –23.1%). Significant rank order correlations with TBW measures of fatness were obtained for DXA estimates of fatness (r=0.54, P=0.01), but not for estimates of fat by skinfold thickness (r=0.20, P=0.2) or BODPOD (r=0.25, P=0.1). Differences between both DXA and BODPOD and the reference TBW estimates of body fatness were not significant (P=0.06 and P=0.1 respectively); however, the difference in estimated body fatness between skinfold thickness and TBW was significant (P<0.001). Estimates of body fatness in preschool children were inaccurate at the level of the individual child using all the methods, but DXA might provide unbiased estimates and a means of making relative assessments of body fatness

Apolipoprotein L1 gene variants associate with prevalent kidney but not prevalent cardiovascular disease in the Systolic Blood Pressure Intervention Trial.

Apolipoprotein L1 gene (APOL1) G1 and G2 coding variants are strongly associated with chronic kidney disease (CKD) in African Americans (AAs). Here APOL1 association was tested with baseline estimated glomerular filtration rate (eGFR), urine albumin:creatinine ratio (UACR), and prevalent cardiovascular disease (CVD) in 2571 AAs from the Systolic Blood Pressure Intervention Trial (SPRINT), a trial assessing effects of systolic blood pressure reduction on renal and CVD outcomes. Logistic regression models that adjusted for potentially important confounders tested for association between APOL1 risk variants and baseline clinical CVD (myocardial infarction, coronary, or carotid artery revascularization) and CKD (eGFR under 60 ml/min per 1.73 m(2) and/or UACR over 30 mg/g). AA SPRINT participants were 45.3% female with a mean (median) age of 64.3 (63) years, mean arterial pressure 100.7 (100) mm Hg, eGFR 76.3 (77.1) ml/min per 1.73 m(2), and UACR 49.9 (9.2) mg/g, and 8.2% had clinical CVD. APOL1 (recessive inheritance) was positively associated with CKD (odds ratio 1.37, 95% confidence interval 1.08-1.73) and log UACR estimated slope (β) 0.33) and negatively associated with eGFR (β -3.58), all significant. APOL1 risk variants were not significantly associated with prevalent CVD (1.02, 0.82-1.27). Thus, SPRINT data show that APOL1 risk variants are associated with mild CKD but not with prevalent CVD in AAs with a UACR under 1000 mg/g

Water in a Changing World

Life on earth depends on the continuous flow of materials through the air, water, soil, and food webs of the biosphere. The movement of water through the hydrological cycle comprises the largest of these flows, delivering an estimated I 10,000 cubic kilometers (km^\u3e of water to the land each year as snow and rainfall. Solar energy drives the hydrological cycle, vaporizing water from the surface of oceans, lakes, and rivers as well as from soils and plants (evapotranspiration). Water vapor rises into the atmosphere where it cools, condenses, and eventually rains down anew. This renewable freshwater supply sustains life on the land, in estuaries, and in the freshwater ecosystems of the earth

Bundap Marram Durn Durn : engagement with Aboriginal women experiencing comorbid chronic physical and mental health conditions

Objective: To explore antecedents of health service engagement and experience among urban Aboriginal people with comorbid physical and mental health conditions. Methods: Focus groups and interviews were conducted with Aboriginal people who had comorbid health conditions and were accessing Aboriginal and/or mainstream services. Results: Nineteen participants, all women, were recruited. Participants’ personal histories and prior experience of health services affected effective service utilisation. Participants’ service experiences were characterised by long waiting times in the public health system and high healthcare staff turnover. Trusted professionals were able to act as brokers to other clinically and culturally competent practitioners. Conclusions: Many urban Aboriginal women attended health services with multiple comorbid conditions including chronic disease and mental health issues. Several barriers and enablers were identified concerning the capacity of services to engage and effectively manage Aboriginal patients’ conditions. Implications: Results indicate the need to explore strategies to improve health care utilisation by urban Aboriginal women