Technical Note: Evaporation of polar stratospheric cloud particles, in situ, in a heated inlet

International audienceIn December 2001 and 2002 in situ aerosol measurements were made from balloon-borne platforms within polar stratospheric clouds (PSC) which contained particles of supercooled ternary solution (STS), nitric acid trihydrate (NAT) and ice. Particle size and number concentrations were measured with two optical particle counters. One of these included an ~80cm inlet heated to K to evaporate the PSC particles and thus to obtain measurements, within PSCs, of the size distribution of the particles upon which the PSCs condensed. These measurements are compared to models, described here, that calculate the evaporation of PSC particles at and for an inlet transition time of about 0.1s. The modeled evaporation for STS agrees well with the measurements. For NAT the modeled evaporation is less than the evaporation measured. The primary uncertainty concerns the phase and morphology of NAT particles as they are brought to temperatures >50K above equilibrium temperatures for NAT at stratospheric partial pressures. The slow evaporation of NAT in heated inlets could be used to identify a small NAT component within a mixed phase PSC dominated by STS

BATAL The Balloon Measurement Campaigns of the Asian Tropopause Aerosol Layer

We describe and show results from a series of field campaigns that used balloonborne instruments launched from India and Saudi Arabia during the summers 2014-17 to study the nature, formation, and impacts of the Asian Tropopause Aerosol Layer (ATAL). The campaign goals were to i) characterize the optical, physical, and chemical properties of the ATAL; ii) assess its impacts on water vapor and ozone; and iii) understand the role of convection in its formation. To address these objectives, we launched 68 balloons from four locations, one in Saudi Arabia and three in India, with payload weights ranging from 1.5 to 50 kg. We measured meteorological parameters; ozone; water vapor; and aerosol backscatter, concentration, volatility, and composition in the upper troposphere and lower stratosphere (UTLS) region. We found peaks in aerosol concentrations of up to 25 cm(-3) for radii \u3e 94 nm, associated with a scattering ratio at 940 nm of approximate to 1.9 near the cold-point tropopause. During medium-duration balloon flights near the tropopause, we collected aerosols and found, after offline ion chromatography analysis, the dominant presence of nitrate ions with a concentration of about 100 ng m(-3). Deep convection was found to influence aerosol loadings 1 km above the cold-point tropopause. The Balloon Measurements of the Asian Tropopause Aerosol Layer (BATAL) project will continue for the next 3-4 years, and the results gathered will be used to formulate a future National Aeronautics and Space Administration-Indian Space Research Organisation (NASA-ISRO) airborne campaign with NASA high-altitude aircraft

Composition analysis of liquid particles in the Arctic stratosphere under synoptic conditions

International audienceSynoptic scale polar stratospheric clouds (PSCs) that formed without the presence of mountain lee waves were observed in early December 2002 from Kiruna/Sweden using balloon-borne instruments. The physical, chemical, and optical properties of the particles were measured. Within the PSC solid particles existed whenever the temperature was below the equilibrium temperature for nitric acid trihydrate and liquid particles appeared when the temperature fell below an even lower threshold about 3 K above the frost point with solid particles still present. The correlation of liquid supercooled ternary solution aerosols with local temperatures is a pronounced feature observed during this flight; average molar ratios H2O/HNO3 were somewhat higher than predicted by models. In addition HCl has been measured for the first time in liquid aerosols. The chlorine isotope signature served as a unique tool to identify unambiguously HCl dissolved in STS particles. Within a narrow temperature range of about three degrees above the frost point, the measured average amount of HCl in liquid particles is below 1 weight%

Composition analysis of liquid particles in the Arctic stratosphere

International audienceSynoptic scale polar stratospheric clouds (PSCs) that formed without the presence of mountain leewaves were observed in early December 2002 from Kiruna/Sweden using balloon-borne instruments. The physical, chemical, and optical properties of the particles were measured. Within the PSC solid particles existed whenever the temperature was below the equilibrium temperature for nitric acid trihydrate and liquid particles appeared when the temperature fell below an even lower threshold about 3 K above the frost point. The correlation of liquid supercooled ternary solution aerosols with local temperatures is a pronounced feature observed during this flight although the molar ratios H2O/HNO3 were about a factor of 2 higher than model predictions. In addition HCl has been measured for the first time in liquid aerosols. The chlorine isotope signature served as a unique tool to identify unambiguously HCl dissolved in STS particles. Within a narrow temperature range of about three degrees above the frost point, measured HCl molar ratios are below 1 weight%. There is only fair agreement with model predictions

Overshooting of Clean Tropospheric Air in the Tropical Lower Stratosphere as Seen by the CALIPSO Lidar

The evolution of aerosols in the tropical upper troposphere/lower stratosphere between June 2006 and October 2009 is examined using the observations of the space borne CALIOP lidar aboard the CALIPSO satellite. Superimposed on several volcanic plumes and soot from an extreme biomass-burning event in 2009, the measurements reveal the existence of fast cleansing episodes of the lower stratosphere to altitudes as high as 20 km. The cleansing of the full 14-20km layer takes place within 1-4 months. Its coincidence with the maximum of convective activity in the southern tropics, suggests that the cleansing is the result of a large number of overshooting towers, injecting aerosol-poor tropospheric air into the lower stratosphere. The enhancements of aerosols at the tropopause level during the NH summer may be due to the same transport process but associated with intense sources of aerosols at the surface. Since, the tropospheric air flux derived from CALIOP observations during North Hemisphere winter is 5 20 times larger than the slow ascent by radiative heating usually assumed, the observations suggest that convective overshooting is a major contributor to troposphere-to-stratosphere transport with concommitant implications to the Tropical Tropopause Layer top height, chemistry and thermal structure

Description and performance of a sectional aerosol microphysical model in the Community Earth System Model (CESM2)

We implemented the Community Aerosol and Radiation Model for Atmospheres (CARMA) in both the high- and low-top model versions of the Community Earth System Model Version 2 (CESM2). CARMA is a sectional microphysical model, which we use for aerosol in both the troposphere and stratosphere. CARMA is fully coupled to chemistry, clouds, radiation, and transport routines in CESM2. This development enables the comparison of simulations with a sectional (CARMA) and a modal (MAM4) aerosol microphysical model in the same modeling framework. The new implementation of CARMA has been adopted from previous work, with some additions that align with the current CESM2 Modal Aerosol Model (MAM4) implementation. The main updates include an interactive secondary organic aerosol description in CARMA, using the volatility basis set (VBS) approach, updated wet removal, and the use of transient emissions of aerosols and trace gases. In addition, we implemented an alternative aerosol nucleation scheme in CARMA, which is also used in MAM4. Detailed comparisons of stratospheric aerosol properties after the Mount Pinatubo eruption reveal the importance of prescribing sulfur injections in a larger region rather than in a single column to better represent the observed evolution of aerosols. Both CARMA and MAM4 in CESM2 are able to represent stratospheric and tropospheric aerosol properties reasonably well when compared to observations. Several differences in the performance of the two aerosol models show, in general, an improved representation of aerosols when using the sectional aerosol model in CESM2. These include a better representation of the aerosol size distribution after the Mount Pinatubo volcanic eruption in CARMA compared to MAM4. MAM4 produces on average smaller aerosols and less removal than CARMA, which results in a larger total mass. Both CARMA and MAM4 reproduce the stratospheric aerosol optical depth (AOD) within the error bar of the observations between 2001 and 2020, except for recent larger volcanic eruptions that are overestimated by both model configurations. The CARMA background surface area density and aerosol size distribution in the stratosphere and troposphere compare well to observations, with some underestimation of the Aitken-mode size range. MAM4 shows shortcomings in reproducing coarse-mode aerosol distributions in the stratosphere and troposphere. This work outlines additional development needs for CESM2 CARMA to improve the model compared to observations in both the troposphere and stratosphere.</p

3'-UTR SIRF: A database for identifying clusters of whort interspersed repeats in 3' untranslated regions

<p>Abstract</p> <p>Background</p> <p>Short (~5 nucleotides) interspersed repeats regulate several aspects of post-transcriptional gene expression. Previously we developed an algorithm (REPFIND) that assigns P-values to all repeated motifs in a given nucleic acid sequence and reliably identifies clusters of short CAC-containing motifs required for mRNA localization in <it>Xenopus </it>oocytes.</p> <p>Description</p> <p>In order to facilitate the identification of genes possessing clusters of repeats that regulate post-transcriptional aspects of gene expression in mammalian genes, we used REPFIND to create a database of all repeated motifs in the 3' untranslated regions (UTR) of genes from the Mammalian Gene Collection (MGC). The MGC database includes seven vertebrate species: human, cow, rat, mouse and three non-mammalian vertebrate species. A web-based application was developed to search this database of repeated motifs to generate species-specific lists of genes containing specific classes of repeats in their 3'-UTRs. This computational tool is called 3'-UTR SIRF (<b>S</b>hort <b>I</b>nterspersed <b>R</b>epeat <b>F</b>inder), and it reveals that hundreds of human genes contain an abundance of short CAC-rich and CAG-rich repeats in their 3'-UTRs that are similar to those found in mRNAs localized to the neurites of neurons. We tested four candidate mRNAs for localization in rat hippocampal neurons by <it>in situ </it>hybridization. Our results show that two candidate CAC-rich (<it>Syntaxin 1B </it>and <it>Tubulin β4</it>) and two candidate CAG-rich (<it>Sec61α </it>and <it>Syntaxin 1A</it>) mRNAs are localized to distal neurites, whereas two control mRNAs lacking repeated motifs in their 3'-UTR remain primarily in the cell body.</p> <p>Conclusion</p> <p>Computational data generated with 3'-UTR SIRF indicate that hundreds of mammalian genes have an abundance of short CA-containing motifs that may direct mRNA localization in neurons. <it>In situ </it>hybridization shows that four candidate mRNAs are localized to distal neurites of cultured hippocampal neurons. These data suggest that short CA-containing motifs may be part of a widely utilized genetic code that regulates mRNA localization in vertebrate cells. The use of 3'-UTR SIRF to search for new classes of motifs that regulate other aspects of gene expression should yield important information in future studies addressing <it>cis</it>-regulatory information located in 3'-UTRs.</p

Ozone loss derived from balloon-borne tracer measurements in the 1999/2000 Arctic winter

Balloon-borne measurements of CFC11 (from the DIRAC in situ gas chromatograph and the DESCARTES grab sampler), ClO and O3 were made during the 1999/2000 Arctic winter as part of the SOLVE-THESEO 2000 campaign, based in Kiruna (Sweden). Here we present the CFC11 data from nine flights and compare them first with data from other instruments which flew during the campaign and then with the vertical distributions calculated by the SLIMCAT 3D CTM. We calculate ozone loss inside the Arctic vortex between late January and early March using the relation between CFC11 and O3 measured on the flights. The peak ozone loss (~1200ppbv) occurs in the 440-470K region in early March in reasonable agreement with other published empirical estimates. There is also a good agreement between ozone losses derived from three balloon tracer data sets used here. The magnitude and vertical distribution of the loss derived from the measurements is in good agreement with the loss calculated from SLIMCAT over Kiruna for the same days

Transmission Efficiency of an Aerodynamic Focusing Lens System: Comparison of Model Calculations and Laboratory Measurements for the Aerodyne Aerosol Mass Spectrometer

The size-dependent particle transmission efficiency of the aerodynamic lens system used in the Aerodyne Aerosol Mass Spectrometer (AMS) was investigated with computational fluid dynamics (CFD) calculations and experimental measurements. The CFD calculations revealed that the entire lens system, including the aerodynamic lens itself, the critical orifice which defines the operating lens pressure, and a valve assembly, needs to be considered. Previous calculations considered only the aerodynamic lens. The calculations also investigated the effect of operating the lens system at two different sampling pressures, 7.8 × 104 Pa (585 torr) and 1.0 × 105 Pa (760 torr). Experimental measurements of transmission efficiency were performed with size-selected diethyl hexyl sebacate (DEHS), NH4NO3, and NaNO3 particles on three different AMS instruments at two different ambient sampling pressures (7.8 × 104 Pa, 585 torr and 1.0 × 105 Pa, 760 torr). Comparisons of the measurements and the calculations showqualitative agreement, but there are significant deviations which are as yet unexplained. On the small size end (30 nm to 150 nm vacuum aerodynamic diameter), the measured transmission efficiency is lower than predicted. On the large size end (\u3e350 nm vacuum aerodynamic diameter

Formation of solid particles in synoptic-scale Arctic PSCs in early winter 2002/2003

International audiencePolar stratospheric clouds (PSC) have been observed in early winter (December 2002) during the SOLVE II/Vintersol campaign, both from balloons carrying comprehensive instrumentation for measurements of chemical composition, size distributions, and optical properties of the particles, as well as from individual backscatter soundings from Esrange and Sodankylä. The observations are unique in the sense that the PSC particles seem to have formed in the early winter under synoptic temperature conditions and not being influenced by mountain lee waves. A sequence of measurements during a 5-days period shows a gradual change between liquid and solid type PSCs with the development of a well-known sandwich structure. It appears that all PSC observations show the presence of a background population of solid particles, occasionally mixed in with more optically dominating liquid particles. The measurements have been compared with results from a detailed microphysical and optical simulation of the formation processes. Calculated extinctions are in good agreement with SAGE-III measurements from the same period. Apparently the solid particles are controlled by the synoptic temperature history while the presence of liquid particles is controlled by the local temperatures at the time of observation. The temperature histories indicate that the solid particles are nucleated above the ice frost point, and a surface freezing mechanism for this is included in the model. Reducing the calculated freezing rates by a factor 10-20, the model is able to simulate the observed particle size distributions and reproduce observed HNO3 gas phase concentrations