Flexstab on the IBM 360

FLEXSTAB, an array of computer programs developed on CDC equipment, has been converted to operate on the IBM 360 computation system. Instructions for installing, validating, and operating FLEXSTAB on the IBM 360 are included. Hardware requirements are itemized and supplemental materials describe JCL sequences, the CDC to IBM conversion, the input output subprograms, and the interprogram data flow

A continuum of weakly coupled oscillatory McKean neurons

The McKean model of a neuron possesses a one dimensional fast voltage-like variable and a slow recovery variable. A recent geometric analysis of the singularly perturbed system has allowed an explicit construction of its phase response curve [S Coombes 2001 Phase-locking in networks of synaptically coupled McKean relaxation oscillators, Physica D, Vol 160, 173-188]. Here we use tools from coupled oscillator theory to study weakly coupled networks of McKean neurons. Using numerical techniques we show that the McKean system has traveling wave phase-locked solutions consistent with that of a network of more biophysically detailed Hodgkin-Huxley neurons

Oxygen and nitrogen cycling in the northeast Pacific – Simulations and observations at Station Papa in 2003/2004

A long-term air-sea exchange mooring has been maintained in the North Pacific near Ocean Station Papa (OSP, 145W, 50N) since September 2002 as part of the Canadian Surface Ocean Lower Atmosphere Study (C-SOLAS). The mooring provides a new long-term data set for gas measurements. In addition to Conductivity, Temperature and Depth (CTD) recorders at two depths, the mooring is equipped with ProOceanus Gas Tension Devices (GTDs) measuring the total gas pressure at four different depths, two oxygen sensors, two fluorometers for chlorophyll estimates, and an upward-looking 200 kHz echo-sounder for bubble measurements. Chlorophyll data have been added using SeaWiFS imagery and occasional bottle casts. Data collected from June 2003 to June 2004 are compared with simulations from a 1-D coupled atmosphere-ocean-biogeochemical model. The coupled model consists of an atmospheric Single Column Model (SCM), based on the CCCma AGCM (Canadian Centre for Climate Modelling and Analysis-Atmospheric General Circulation Model), the General Ocean Turbulence Model (GOTM) and a 7-component ecosystem model embedded in GOTM. The ecosystem model also includes oxygen, nitrogen, carbon, and silica cycling. The study focuses on simulated and observed N2 and O2 variability. The comparison of these gases allows for separation of physical and biological processes; which can then be evaluated in more detail with the aid of model simulations. The model also tests different parameterizations for saturation and gas exchange, including a formulation for gas injection via bubbles, which affects gas concentrations within the whole mixed layer. For most of the time the model shows good agreement with observations. However, in summer 2003 the observations reveal a strong oxygen and chlorophyll event, which is not reproduced in the standard model run. A weaker signal is seen in May 2004. OSP is a High Nutrient Low Chlorophyll (HNLC) region, limited by the micronutrient iron. Increases in usually low chlorophyll values occur occasionally due to natural iron enrichment (dust deposition, eddy transport, below surface layer transport). Although limitations of 1-D modeling become apparent here, an assumed input of iron in the model explains the differences between simulated and observed oxygen and chlorophyll maxima. The model provides information on the strength and duration of potential iron contribution. No obvious dust events or eddy traverses to supply iron were recorded during this time period. An alternative explanation is entrainment from deeper waters, where occasional iron enrichment is known to occur due to off-shelf transport via eddies or recirculation from the Alaskan shelf

Re-evaluation of Cryptosporiopsis eucalypti and Cryptosporiopsis-like species occurring on Eucalyptus

Cryptosporiopsis eucalypti is a common follicolous pathogen of Eucalyptus species in tropical and temperate regions where these trees are grown in plantations. The taxonomy of C. eucalypti is confused by the fact that it is phylogenetically unrelated to the type species of Cryptosporiopsis (Cryptosporiopsis nigra = C. scutellata, Helotiales). The aim of this study was to resolve the taxonomic position of C. eucalypti based on morphology and phylogenetic inference. Thirty-two Eucalyptus leaf samples with symptoms typical of C. eucalypti infection were collected from 10 tropical and temperate countries across four continents. Cultures were established from single conidia, as well as from ascospores of a previously unreported teleomorph state. DNA sequences were obtained for the 28 S nrDNA, the internal transcribed spacers of the nrDNA operon, and beta-tubulin regions to determine generic and species-level relationships. DNA-sequence analysis showed that conidial and ascospore isolates of C. eucalypti have low intraspecific variation, although two collections from Australia and one from Uruguay represented two novel taxa. Based on the newly collected teleomorph stage, as well as the phylogenetic data, C. eucalypti is shown to represent a new genus closely related to Plagiostoma (Gnomoniaceae, Diaporthales) for which the names Pseudoplagiostoma gen. nov. and Pseudoplagiostomaceae fam. nov. (Diaporthales) are introduced. Two new species of Cryptosporiopsis (Dermateaceae, Helotiales) on Eucalyptus from Australia and California (USA) are also described

Estimating the health benefits of progeny extraction units as a means of reducing exposure to radon

Radon exposure to the general public can be reduced by preventing entry of radon gas into buildings using a passive radon-proof membrane or an active sump and pump system. However, a significant majority of the radiation dose delivered is from the decay products of radon rather than from the gas itself. These decay products (also referred to as progeny) are present in indoor air, with an equilibrium factor – a measure of the ratio of progeny to radon gas – of between 0.4 to 0.5. As a result, systems which extract radon progeny from the air by filtering have been promoted as means of reducing exposure to the general population. The European Community Radon Software (ECRS) offers a means of estimating lung-cancer risk associated with an individual’s exposure to radon, and includes the possibility of estimating the health risk from different proportions of radon gas and its progeny by varying the value of the Equilibrium Factor. This software was used to estimate the health benefits associated with reduced decay products in differing concentrations of radon gas. The results were compared to health benefits expected if the risk was reduced by the standard method of reducing the radon gas concentration below the Action Level, which in the UK is 200 Bq·m-3 for domestic properties. These calculations showed that there is the potential for efficient extraction units to provide the necessary dose and risk reduction where initial average radon gas concentrations are up to 800 Bq·m-3. However, above 1000 Bq·m-3, such systems cannot reduce the health risk sufficiently to reach levels comparable to those resulting from radon gas reduction to below the Action Leve

Variation in lung function as a marker of adherence to oral and inhaled medication in cystic fibrosis

Study aim: The aim of this study was to characterise adherence in an adult population with CF and to investigate if variation in lung function was a predictor of adherence to treatment. Patients and methods: Patients aged ≥ 16 years from an adult CF centre undertook adherence measures by medication possession ratio (MPR) and self-report and were assigned to one of three adherence categories (<50%, 50-<80%, 80% and above) by their composite score (MPR). Ordinal regression was used to identify predictors of adherence including coefficient variation measures for forced expiratory volume in 1 second (FEV1), weight and C-reactive protein, measured up to 6 and 12 months. Results: MPR data for 106 of 249 patients [mean age 29.8 (±9.2) years] was retrieved, indicating a mean adherence of 63%. Coefficient of variation FEV1 was inversely related to adherence and was a univariate predictor of adherence (6 months: 0.92 [0.87-0.98] p= 0.005 and 12 months: 0.94 [0.93-0.99], p=0.03]) and remained significant in the final models. The coefficient variation of weight and C-reactive protein were not predictive of adherence. Conclusions: Coefficient of variation FEV1 was identified as an objective predictor of adherence. Further evaluation of this potential marker of adherence is now required