Assessment of MISR and MODIS cloud top heights through inter-comparison with a back-scattering lidar at SIRTA

One year of back-scattering lidar cloud boundaries and optical depth were analysed for coincident inter-comparison with the latest processed versions of the NASA-TERRA MISR stereo and MODIS CO2-slicing operational cloud top heights. Optically thin clouds were found to be accurately characterised by the MISR cloud top height product as long as no other cloud was present at lower altitude. MODIS cloud top heights were generally found within the cloud extent retrieved by lidar; agreement improved as cloud optical depth increased and when CO2-slicing was the only technique used for the retrieval. The difference between Lidar and MISR cloud top heights was found to lie between −0.1 and 0.4 km for low clouds and between 0.1 and 3.1 km for high clouds. The difference between Lidar and MODIS cloud top heights was found to lie between −1.2 and 1.5 km for low clouds and between −1.4 and 2.7 km for high clouds

Coordination of ECA Rules by Verification and Control

International audienceEvent-Condition-Action (ECA) rules are a widely used language for the high level specification of controllers in adaptive systems, such as Cyber-Physical Systems and smart environments, where devices equipped with sensors and actuators are controlled according to a set of rules. The evaluation and execution of every ECA rule is considered to be independent from the others, but interactions of rule actions can cause the system behaviors to be unpredictable or unsafe. Typical problems are in redundancy of rules, inconsistencies, circularity, or application-dependent safety issues. Hence, there is a need for coordination of ECA rule-based systems in order to ensure safety objectives. We propose a tool-supported method for verifying and controlling the correct interactions of rules, relying on formal models related to reactive systems, and Discrete Controller Synthesis (DCS) to generate correct rule controllers

Evaluating the suitability of close-kin mark-recapture as a demographic modelling tool for a critically endangered elasmobranch population

Funding Information: We are grateful to the various stakeholders involved in the Celtic Sea blue skate monitoring programme, in particular to the crew aboard the FV Govenek of Ladram. We thank Martina Kopp for her assistance in the laboratory, Andrzej Kilian and the Diversity Arrays Technology team (DArT Pty. Ltd., Canberra, Australia) for performing the genotyping work, and Daniel Ruzzante, Eric Anderson, Mark Bravington, and Robin Waples for their inputs during the early stages of the project at a CKMR workshop at Dalhousie University, Halifax, Canada. MF and CSJ received funding from the MASTS (The Marine Alliance for Science and Technology for Scotland), and their support is gratefully acknowledged. MASTS is funded by the Scottish Funding Council (grant reference HR09011) and contributing institutions. Our thanks also go to Professor Francis Neat for his expertise and advice on Scottish blue skates, and to Samuel Iglésias and Thomas Barreau for sharing valuable insights from their studies on Celtic Sea blue skate.Peer reviewe

IFT proteins interact with HSET to promote supernumerary centrosome clustering in mitosis.

Centrosome amplification is a hallmark of cancer, and centrosome clustering is essential for cancer cell survival. The mitotic kinesin HSET is an essential contributor to this process. Recent studies have highlighted novel functions for intraflagellar transport (IFT) proteins in regulating motors and mitotic processes. Here, using siRNA knock-down of various IFT proteins or AID-inducible degradation of endogenous IFT88 in combination with small-molecule inhibition of HSET, we show that IFT proteins together with HSET are required for efficient centrosome clustering. We identify a direct interaction between the kinesin HSET and IFT proteins, and we define how IFT proteins contribute to clustering dynamics during mitosis using high-resolution live imaging of centrosomes. Finally, we demonstrate the requirement of IFT88 for efficient centrosome clustering in a variety of cancer cell lines naturally harboring supernumerary centrosomes and its importance for cancer cell proliferation. Overall, our data unravel a novel role for the IFT machinery in centrosome clustering during mitosis in cells harboring supernumerary centrosomes

Evaluating the suitability of close-kin mark-recapture as a demographic modelling tool for a critically endangered elasmobranch population

Estimating the demographic parameters of contemporary populations is essential to the success of elasmobranch conservation programmes, and to understanding their recent evolutionary history. For benthic elasmobranchs such as skates, traditional fisheries-independent approaches are often unsuitable as the data may be subject to various sources of bias, whilst low recapture rates can render mark-recapture programmes ineffectual. Close-kin mark-recapture (CKMR), a novel demographic modelling approach based on the genetic identification of close relatives within a sample, represents a promising alternative approach as it does not require physical recaptures. We evaluated the suitability of CKMR as a demographic modelling tool for the critically endangered blue skate (Dipturus batis) in the Celtic Sea using samples collected during fisheries-dependent trammel-net surveys that ran from 2011 to 2017. We identified three full-sibling and 16 half-sibling pairs among 662 skates, which were genotyped across 6291 genome-wide single nucleotide polymorphisms, 15 of which were cross-cohort half-sibling pairs that were included in a CKMR model. Despite limitations owing to a lack of validated life-history trait parameters for the species, we produced the first estimates of adult breeding abundance, population growth rate, and annual adult survival rate for D. batis in the Celtic Sea. The results were compared to estimates of genetic diversity, effective population size (Ne), and to catch per unit effort estimates from the trammel-net survey. Although each method was characterized by wide uncertainty bounds, together they suggested a stable population size across the time-series. Recommendations for the implementation of CKMR as a conservation tool for data-limited elasmobranchs are discussed. In addition, the spatio-temporal distribution of the 19 sibling pairs revealed a pattern of site fidelity in D. batis, and supported field observations suggesting an area of critical habitat that could qualify for protection might occur near the Isles of Scilly

Three-dimensional conformation at the H19/Igf2 locus supports a model of enhancer tracking

Insight into how the mammalian genome is structured in vivo is key to understanding transcriptional regulation. This is especially true in complex domains in which genes are coordinately regulated by long-range interactions between cis-regulatory elements. The regulation of the H19/Igf2 imprinted region depends on the presence of several cis-acting sequences, including a methylation-sensitive insulator between Igf2 and H19 and shared enhancers downstream of H19. Each parental allele has a distinct expression pattern. We used chromosome conformation capture to assay the native three-dimensional organization of the H19/Igf2 locus on each parental copy. Furthermore, we compared wild-type chromosomes to several mutations that affect the insulator. Our results show that promoters and enhancers reproducibly co-localize at transcriptionally active genes, i.e. the endodermal enhancers contact the maternal H19 and the paternal Igf2 genes. The active insulator blocks traffic of the enhancers along the chromosome, restricting them to the H19 promoter. Conversely, the methylated inactive insulator allows the enhancers to contact the upstream regions, including Igf2. Mutations that either remove or inhibit insulator activity allow unrestricted access of the enhancers to the whole region. A mutation that allows establishment of an enhancer-blocker on the normally inactive paternal copy diminishes the contact of the enhancer with the Igf2 gene. Based on our results, we propose that physical proximity of cis-acting DNA elements is vital for their activity in vivo. We suggest that enhancers track along the chromosome until they find a suitable promoter sequence to interact with and that insulator elements block further tracking of enhancers

Earlinet - lidar algorithm intercomparison

Postprint (published version

Pericentrin in cellular function and disease

Pericentrin is an integral component of the centrosome that serves as a multifunctional scaffold for anchoring numerous proteins and protein complexes. Through these interactions, pericentrin contributes to a diversity of fundamental cellular processes. Recent studies link pericentrin to a growing list of human disorders. Studies on pericentrin at the cellular, molecular, and, more recently, organismal level, provide a platform for generating models to elucidate the etiology of these disorders. Although the complexity of phenotypes associated with pericentrin-mediated disorders is somewhat daunting, insights into the cellular basis of disease are beginning to come into focus. In this review, we focus on human conditions associated with loss or elevation of pericentrin and propose cellular and molecular models that might explain them