1,371 research outputs found

    The Atp-dependent Rna Helicase Hrpb Plays An Important Role In Motility And Biofilm Formation In Xanthomonas Citri Subsp. Citri

    Get PDF
    Background: RNA helicases are enzymes that catalyze the separation of double-stranded RNA (dsRNA) using the free energy of ATP binding and hydrolysis. DEAD/DEAH families participate in many different aspects of RNA metabolism, including RNA synthesis, RNA folding, RNA-RNA interactions, RNA localization and RNA degradation. Several important bacterial DEAD/DEAH-box RNA helicases have been extensively studied. In this study, we characterize the ATP-dependent RNA helicase encoded by the hrpB (XAC0293) gene using deletion and genetic complementation assays. We provide insights into the function of the hrpB gene in Xanthomonas citri subsp. citri by investigating the roles of hrpB in biofilm formation on abiotic surfaces and host leaves, cell motility, host virulence of the citrus canker bacterium and growth in planta. Results: The hrpB gene is highly conserved in the sequenced strains of Xanthomonas. Mutation of the hrpB gene (Δ;hrpB) resulted in a significant reduction in biofilms on abiotic surfaces and host leaves. Δ;hrpB also exhibited increased cell dispersion on solid medium plates. Δ;hrpB showed reduced adhesion on biotic and abiotic surfaces and delayed development in disease symptoms when sprayed on susceptible citrus leaves. Quantitative reverse transcription-PCR assays indicated that deletion of hrpB reduced the expression of four type IV pili genes. The transcriptional start site of fimA (XAC3241) was determined using rapid amplification of 5′-cDNA Ends (5′RACE). Based on the results of fimA mRNA structure predictions, the fimA 5′ UTR may contain three different loops. HrpB may be involved in alterations to the structure of fimA mRNA that promote the stability of fimA RNA. Conclusions: Our data show that hrpB is involved in adherence of Xanthomonas citri subsp. citri to different surfaces. In addition, to the best of our knowledge, this is the first time that a DEAH RNA helicase has been implicated in the regulation of type IV pili in Xanthomonas. © 2016 Granato et al.16

    A study of the bound states for square potential wells with position-dependent mass

    Get PDF
    A square potential well with position-dependent mass is studied for bound states. Applying appropriate matching conditions, a transcendental equation is derived for the energy eigenvalues. Numerical results are presented graphically and the variation of the energy of the bound states are calculated as a function of the well-width and mass.Comment: To appear in Phys. Lett. A (Present e-mail of A.G: [email protected]

    Walking training improves systemic and local pathophysiological processes in intermittent claudication

    Get PDF
    Objective: This study examined the impact of submaximal walking training (WT) on local and systemic nitric oxide (NO) bioavailability, inflammation, and oxidative stress in patients with intermittent claudication (IC). Methods: The study employed a randomised, controlled, parallel group design and was performed in a single centre. Thirty-two men with IC were randomly allocated to two groups: WT (n = 16, two sessions/week, 15 cycles of two minutes walking at an intensity corresponding to the heart rate obtained at the pain threshold interspersed by two minutes of upright rest) and control (CO, n = 16, two sessions/week, 30 minutes of stretching). NO bioavailability (blood NO and muscle nitric oxide synthase [eNOS]), redox homeostasis (catalase [CAT], superoxide dismutase [SOD], lipid peroxidation [LPO] measured in blood and muscle), and inflammation (interleukin-6 [IL-6], C-reactive protein [CRP], tumour necrosis factor α [TNF-α], intercellular adhesion molecules [ICAM], vascular adhesion molecules [VCAM] measured in blood and muscle) were assessed at baseline and after 12 weeks. Results: WT statistically significantly increased blood NO, muscle eNOS, blood SOD and CAT, and muscle SOD and abolished the increase in circulating and muscle LPO observed in the CO group. WT decreased blood CRP, ICAM, and VCAM and muscle IL-6 and CRP and eliminated the increase in blood TNF-α and muscle TNF-α, ICAM and VCAM observed in the CO group. Conclusion: WT at an intensity of pain threshold improved NO bioavailability and decreased systemic and local oxidative stress and inflammation in patients with IC. The proposed WT protocol provides physiological adaptations that may contribute to cardiovascular health in these patients

    GWAS in Breast Cancer

    Get PDF
    Breast cancer is the most diagnosed cancer in women, and the second cause of cancer-related deaths among women worldwide. It is expected that more than 240,000 new cases and 40,450 deaths related to the disease will occur in 2016. It is well known that inherited genetic variants are drivers for breast cancer development. There are many mechanisms through which germline genetic variation affects prognosis, such as BRCA1 and BRCA2 genes, which account for approximately 20% of the increased hereditary risks. Therefore, it is evident that the genetic pathways that underlie cancer development are complex in which networks of multiple alleles confer disease susceptibility and risks. Global analyses through genome-wide association studies (GWAS) have revealed several loci across the genome are associated with the breast cancer. This chapter compiles all breast GWAS released since 2007, year of the first article published in this area, and discuss the future directions of this field. Currently, hundreds of genetic markers are linked to breast cancer, and understanding the underlying mechanisms of these variants might lead to the discover of biomarkers and targets for therapy in patients

    Recomendações Para O Tratamento Da Crise Migranosa - Um Consenso Brasileiro

    Get PDF
    In this article, a group of experts in headache management of the Brazilian Headache Society developed through a consensus strategic measurements to treat a migraine attack in both the child and the adult. Particular emphasis was laid on the treatment of migraine in women, including at pregnancy, lactation and perimenstrual period. © 2016, Associacao Arquivos de Neuro-Psiquiatria. All rights reserved.74326227

    Electron Collisions With Ammonia And Formamide In The Low- And Intermediate-energy Ranges

    Get PDF
    Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)We report an investigation on electron collisions with two nitrogen-containing compounds, namely ammonia (NH3) and formamide (NH2CHO). For ammonia, both theoretical and experimental differential, integral, and momentum-transfer cross sections, as well as calculated grand-total and total absorption cross sections, are reported in the 50-500 eV incident energy range. Calculated results of various cross sections are also reported for energies below 50 eV. Experimentally, angular distributions of the scattered electrons were measured using a crossed electron beam-molecular beam geometry and then converted to absolute differential cross sections using the relative flow technique. Absolute integral and momentum-transfer cross sections for elastic e - ammonia scattering were also derived from the measured differential cross sections. For formamide, only theoretical cross sections are presented in the 1-500 eV incident energy range. A single-center-expansion technique combined with the method of Padé was used in our calculations. For both targets, our calculated cross sections are compared with the present measured data and with the theoretical and experimental data available in the literature and show generally good agreement. Moreover, for formamide, two shape resonances located at 3.5 eV and 15 eV which correspond to the continuum 2A'' and 2A' scattering symmetries, respectively, are identified. The former can be associated to the 2B1 shape resonance in formaldehyde located at around 2.5 eV, whereas the latter can be related to the 2E resonance in ammonia at about 10 eV. Such correspondence is very interesting and so supports the investigation on electron interaction with small building blocks, instead of with larger biomolecules.906CAPES; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; FAPESP; Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Boudaïffa, B., Cloutier, P., Hunting, D., Huels, M.A., Sanche, L., (2000) Science, 287, p. 1658. , SCIEAS 0036-8075Huels, M.A., Boudaïffa, B., Cloutier, P., Hunting, D., Sanche, L., (2003) J. Am. Chem. Soc., 125, p. 4467. , JACSAT 0002-7863Sugohara, R.T., Homem, M.G.P., Sanches, I.P., De Moura, A.F., Lee, M.T., Iga, I., (2011) Phys. Rev. A, 83, p. 032708. , PLRAAN 1050-2947Lee, M.-T., De Souza, G.L.C., Machado, L.E., Brescansin, L.M., Dos Santos, A.S., Lucchese, R.R., Sugohara, R.T., Iga, I., (2012) J. Chem. Phys., 136, p. 114311. , JCPSA6 0021-9606De Souza, G.L.C., Lee, M.-T., Sanches, I.P., Rawat, P., Iga, I., Dos Santos, A.S., Machado, L.E., Lucchese, R.R., (2010) Phys. Rev. A, 82, p. 012709. , PLRAAN 1050-2947Sugohara, R.T., Homem, M.G.P., Iga, I., De Souza, G.L.C., Machado, L.E., Ferraz, J.R., Dos Santos, A.S., Lee, M.-T., (2013) Phys. Rev. A, 88, p. 022709. , PLRAAN 1050-2947Sato, T., Shibata, F., Goto, T., (1986) Chem. Phys., 108, p. 147. , CMPHC2 0301-0104Brüche, E., (1927) Ann. Phys. (Leipzig), 83, p. 1065. , ANPYA2 0003-3804Sueoka, O., Mori, S., (1984) J. Phys. Soc. Jpn., 53, p. 2491. , JUPSAU 0031-9015Szmytkowski, C., Maciag, K., Karwarsz, G., Filipović, D., (1989) J. Phys. B, 22, p. 525. , JPAPEH 0953-4075Zecca, A., Karwasz, G.P., Brusa, R.S., (1992) Phys. Rev. A, 45, p. 2777. , PLRAAN 1050-2947García, G., Manero, F., (1996) J. Phys. B, 29, p. 4017. , JPAPEH 0953-4075Ariyasinghe, W.M., Wijeratne, T., Palihawadana, P., (2004) Nucl. Instrum. Meth. B, 217, p. 389Jones, N.C., Field, D., Lunt, S.L., Ziesel, J.P., (2008) Phys. Rev. A, 78, p. 042714. , PLRAAN 1050-2947Rao, M.V.V.S., Srivastava, S.K., (1992) J. Phys. B, 25, p. 2175. , JPAPEH 0953-4075Hayashi, H., (1981), Institute of Plasma Physics, Nagoya University, Japan, Report No. IPPJ-AM-19, (unpublished)Pack, J.I., Voshall, R.E., Phelps, A.V., (1962) Phys. Rev., 127, p. 2084. , PHRVAO 0031-899XAltshuler, S., (1957) Phys. Rev., 107, p. 114. , PHRVAO 0031-899XBen Arfa, M., Tronc, M., (1988) J. Chim. Phys., 85, p. 889Furlan, M., Hubin-Franskin, M.-J., Delwiche, J., Collin, J.E., (1990) J. Chem. Phys., 92, p. 213. , JCPSA6 0021-9606Alle, D.T., Gulley, R.J., Buckman, S.J., Brunger, M.J., (1992) J. Phys. B, 25, p. 1533. , JPAPEH 0953-4075Harshbarger, W.R., Skerbele, A., Lassettre, E.N., (1971) J. Chem. Phys., 54, p. 3784. , JCPSA6 0021-9606Gulley, R.J., Brunger, M.J., Buckman, S.J., (1992) J. Phys. B: At. Mol. Opt. Phys., 25, p. 2433. , JPAPEH 0953-4075Gianturco, F.A., Jain, A., (1986) Phys. Rep., 143, p. 347. , PRPLCM 0370-1573Pritchard, H.P., Lima, M.A.P., McKoy, V., (1989) Phys. Rev. A, 39, p. 2392. , 0556-2791Gianturco, F., (1991) J. Phys. B: At. Mol. Opt. Phys., 24, p. 4627. , JPAPEH 0953-4075Rescigno, T.N., Lengsfield, B.H., McCurdy, C.W., Parker, S.D., (1992) Phys. Rev. A, 45, p. 7800. , PLRAAN 1050-2947Ribeiro, E.M.S., Machado, L.E., Lee, M.-T., Brescansin, L.M., (2001) Comput. Phys. Commun., 136, p. 117. , CPHCBZ 0010-4655Munjal, H., Baluja, K., (2007) J. Phys. B, 40, p. 1713. , JPAPEH 0953-4075Jain, A.K., Tripathi, A.N., Jain, A., (1989) Phys. Rev. A, 39, p. 1537. , 0556-2791Joshipura, K.N., Vinodkumar, M., Patel, U.M., (2001) J. Phys. B, 34, p. 509. , JPAPEH 0953-4075Yuan, J., Zhang, Z., (1992) Phys. Rev. A, 45, p. 4565. , PLRAAN 1050-2947Limbachiya, C., Vinodkumar, M., Mason, N., (2011) Phys. Rev. A, 83, p. 042708. , PLRAAN 1050-2947Maljković, J.B., Blanco, F., García, G., Milosavljević, A.R., (2012) Nucl. Instrum. Methods, Phys. Res. B, 279, p. 124. , NIMBEU 0168-583XHollis, J.M., Lovas, F.J., Remijian, A., Jewell, P.R., Ilushin, V., Kleiner, I., (2006) Astrophys. J. Lett., 643, p. L25. , AJLEEY 0004-637XBettega, M.H.F., (2010) Phys. Rev. A, 81, p. 062717. , PLRAAN 1050-2947Wang, Y.-F., Tian, S.X., (2012) Phys. Rev. A, 85, p. 012706. , PLRAAN 1050-2947Gupta, D., Naghma, R., Antony, B., (2014) Mol. Phys., 112, p. 1201. , MOPHAM 0026-8976Srivastava, S.K., Chutjian, A., Trajmar, S., (1975) J. Chem. Phys., 63, p. 2659. , JCPSA6 0021-9606Iga, I., Lee, M.T., Homem, M.G.P., Machado, L.E., Brescansin, L.M., (2000) Phys. Rev. A, 61, p. 022708. , PLRAAN 1050-2947Rawat, P., Iga, I., Lee, M.T., Brescansin, L.M., Homem, M.G.P., Machado, L.E., (2003) Phys. Rev. A, 68, p. 052711. , PLRAAN 1050-2947Iga, I., Sanches, I.P., Srivastava, S.K., Mangan, M., (2001) Int. J. Mass Spectrom., 208, p. 159. , IMSPF8 1387-3806Homem, M.G.P., Iga, I., Sugohara, R.T., Sanches, I.P., Lee, M.T., (2011) Rev. Sci. Instrum., 82, p. 013109Jansen, R.H.J., De Heer, F.J., Luyken, H.J., Van Wingerden, B., Blaauw, H.J., (1976) J. Phys. B, 9, p. 185. , JPAMA4 0022-3700Dubois, R.D., Rudd, M.E., (1976) J. Phys. B, 9, p. 2657. , JPAMA4 0022-3700Rawat, P., Homem, M.G.P., Sugohara, R.T., Sanches, I.P., Iga, I., De Souza, G.L.C., Dos Santos, A.S., Lee, M.-T., (2010) J. Phys. B, 43, p. 225202. , JPAPEH 0953-4075Ferraz, J.R., Dos Santos, A.S., De Souza, G.L.C., Zanelato, A.I., Alves, T.R.M., Lee, M.-T., Brescansin, L.M., Machado, L.E., (2013) Phys. Rev. A, 87, p. 032717. , PLRAAN 1050-2947Gianturco, F.A., Lucchese, R.R., Sanna, N., (1995) J. Chem. Phys., 102, p. 5743. , JCPSA6 0021-9606Edmonds, A.R., (1960) Angular Momentum and Quantum Mechanics, , (Princeton University Press, Princeton, NJ)Padial, N.T., Norcross, D.W., (1984) Phys. Rev. A, 29, p. 1742. , 0556-2791Lee, M.-T., Iga, I., Machado, L.E., Brescansin, L.M., Castro E A, Y., Sanches, I.P., De Souza, G.L.C., (2007) J. Electron Spectrosc. Relat. Phenom., 155, p. 14. , JESRAW 0368-2048Staszewska, G., Schwenke, D.W., Truhlar, D.G., (1984) Phys. Rev. A, 29, p. 3078. , 0556-2791Hara, S., (1967) J. Phys. Soc. Jpn., 22, p. 710. , JUPSAU 0031-9015Frisch, M.J., (2004) Gaussian 03, Revision C. 02, , (Gaussian Inc., Wallingford, CT)http://cccbdb.nist.govBurke, P.G., Chandra, N., Gianturco, F.A., (1972) J. Phys. B, 5, p. 2212. , JPAMA4 0022-3700Machado, L.E., Brescansin, L.M., Iga, I., Lee, M.-T., (2005) Eur. Phys. J. D, 33, p. 193. , EPJDF6 1434-6060Brescansin, L.M., Machado, L.E., Lee, M.-T., Cho, H., Park, Y.S., (2008) J. Phys. B, 41, p. 185201. , JPAPEH 0953-4075Itikawa, Y., (1974) At. Data Nucl. Data Tables, 14, p. 1Kim, Y.-K., Rudd, M.E., (1994) Phys. Rev. A, 50, p. 3954. , PLRAAN 1050-2947Schmidt, M.W., Baldridge, K.K., Boatz, J.A., Elbert, S.T., Gordon, M.S., Jensen, J.H., Koseki, S., Montgomery, J.A., (1993) J. Comput. Chem., 14, p. 1347. , JCCHDD 0192-8651Khakoo, M.A., Blumer, J., Keane, K., Campbell, C., Silva, H., Lopes, M.C.A., Winstead, C., Bettega, M.H.F., (2008) Phys. Rev. A, 77, p. 042705. , PLRAAN 1050-2947Goumans, T.P.M., Gianturco, F.A., Sebastianelli, F., Baccarelli, I., Rivail, J.L., (2009) J. Chem. Theory Comput., 5, p. 217. , 1549-9618Gallup, G.A., (2013) J. Chem. Phys., 139, p. 104308. , 0021-960
    corecore