Digital fragment analysis of short tandem repeats by high‐throughput amplicon sequencing

High‐throughput sequencing has been proposed as a method to genotype microsatellites and overcome the four main technical drawbacks of capillary electrophoresis: amplification artifacts, imprecise sizing, length homoplasy, and limited multiplex capability. The objective of this project was to test a high‐throughput amplicon sequencing approach to fragment analysis of short tandem repeats and characterize its advantages and disadvantages against traditional capillary electrophoresis. We amplified and sequenced 12 muskrat microsatellite loci from 180 muskrat specimens and analyzed the sequencing data for precision of allele calling, propensity for amplification or sequencing artifacts, and for evidence of length homoplasy. Of the 294 total alleles, we detected by sequencing, only 164 alleles would have been detected by capillary electrophoresis as the remaining 130 alleles (44%) would have been hidden by length homoplasy. The ability to detect a greater number of unique alleles resulted in the ability to resolve greater population genetic structure. The primary advantages of fragment analysis by sequencing are the ability to precisely size fragments, resolve length homoplasy, multiplex many individuals and many loci into a single high‐throughput run, and compare data across projects and across laboratories (present and future) with minimal technical calibration. A significant disadvantage of fragment analysis by sequencing is that the method is only practical and cost‐effective when performed on batches of several hundred samples with multiple loci. Future work is needed to optimize throughput while minimizing costs and to update existing microsatellite allele calling and analysis programs to accommodate sequence‐aware microsatellite data

GPS-Geodetic Deformation Monitoring of the South-west Seismic Zone of Western Australia: Review, Description of Methodology and Results from Epoch-one

The south-west seismic zone (SWSZ) is a northwest-southeast trending belt of intraplate earthquake activity that occurs in the south-western corner of Western Australia, and is one of the most seismically active areas in Australia. Since the SWSZ lies as close as ~150 km from the ~1.4 million population of the Perth region, it poses a distinct seismic hazard. Earthquake activity recorded by Geoscience Australia over the past three decades suggests that the SWSZ could be deforming by 0.5-5 mmy-1. However, little is currently known about the magnitude and orientation of this deformation, and whether there is any associated surface expression. Previous geodetic studies of the SWSZ that used both terrestrial and Global Positioning System (GPS) techniques are inconclusive, due mainly to the imprecision of the technologies used in relation to the likely small amount of any surface deformation. Therefore, a new 48-point GPS-geodetic monitoring network has been established across the SWSZ to attempt to detect surface deformation, for which epoch-one episodic GPS-geodetic measurements were made in May 2002. This paper briefly reviews previous attempts to geodetically measure surface deformation across the SWSZ, summarises the scientific rationale for the new project, describes the network design and observations used, results of the May 2002 campaign (epoch-one) and discusses future work, including issues pertaining to the likely amount of surface deformation that can be detected

Clay Mineral Cycles Identified by Diffuse Spectral Reflectance in Quaternary Sediments From the Northwind Ridge: Implications for Glacial-Interglacial Sedimentation Patterns in the Arctic Ocean

A Quaternary record of fine-grained sediment composition is used to investigate Arctic Ocean climate variability on glacial-interglacial time scales. Diffuse spectral reflectance data from sediment core P1-92AR-P25 from the Northwind Ridge, north of Alaska, demonstrates cyclic variations in mineralogy. Varimax-rotated R-mode factor analysis of down-core data revealed three major mineralogical assemblages, which were then compared with the content of manganese, a proxy for basin ventilation, and thus glacial-interglacial cycles. Results indicate that factor 1, a smectite + chlorite clay assemblage, was delivered to the core site during interglacials, either by fluvial discharge or sea-ice drift from Siberian rivers or inflow from the Bering Sea. Factor 2, an illite + goethite assemblage, is related to glacial periods, and was probably transported from the Laurentide Ice Sheet by icebergs or meltwater. Factor 3, glauconite, might have been sourced from the North Slope region of Alaska during deglacial intervals, or from dolomites associated with Laurentide iceberg-discharge pulses. The observed variations in sediment source and transport mechanisms arise from glacial-interglacial changes in sea level, the size of the terrestrial ice sheets surrounding the Arctic Ocean, the extent of sea-ice cover and altered atmospheric circulation. The reconstructed glacial-interglacial circulation patterns from the Late Quaternary show some similarity with modern circulation changes presumably related to the monthly- to decadally-fluctuating Arctic Oscillation. However, because the Arctic Oscillation operates on much shorter time scales, further research is necessary to better understand the driving mechanism for the changes observed over glacial-interglacial cycles, and the potential role of ocean-atmospheric interaction

In-gas-cell laser ionization spectroscopy in the vicinity of 100Sn: Magnetic moments and mean-square charge radii of N=50-54 Ag

In-gas-cell laser ionization spectroscopy studies on the neutron deficient 97-101Ag isotopes have been performed with the LISOL setup. Magnetic dipole moments and mean-square charge radii have been determined for the first time with the exception of 101Ag, which was found in good agreement with previous experimental values. The reported results allow tentatively assigning the spin of 97,99Ag to 9/2 and confirming the presence of an isomeric state in these two isotopes, whose collapsed hyperfine structure suggests a spin of 1/2 . The effect of the N=50 shell closure is not only manifested in the magnetic moments but also in the evolution of the mean-square charge radii of the isotopes investigated, in accordance with the spherical droplet model predictions

Four Reports of Ostracod Investigations Conducted Under National Science Foundation Project GB-26

1-79http://deepblue.lib.umich.edu/bitstream/2027.42/48586/2/ID447.pd

Low-energy Coulomb excitation of 62^{62}Fe and 62^{62}Mn following in-beam decay of 62^{62}Mn

Sub-barrier Coulomb-excitation was performed on a mixed beam of $^{62}$Mn and $^{62}$Fe, following in-trap $\beta^{-}$ decay of $^{62}$Mn at REX-ISOLDE, CERN. The trapping and charge breeding times were varied in order to alter the composition of the beam, which was measured by means of an ionisation chamber at the zero-angle position of the Miniball array. A new transition was observed at 418~keV, which has been tentatively associated to a $(2^{+},3^{+})\rightarrow1^{+}_{g.s.}$ transition. This fixes the relative positions of the $\beta$-decaying $4^{+}$ and $1^{+}$ states in $^{62}$Mn for the first time. Population of the $2^{+}_{1}$ state was observed in $^{62}$Fe and the cross-section determined by normalisation to the $^{109}$Ag target excitation, confirming the $B(E2)$ value measured in recoil-distance lifetime experiments.Comment: 9 pages, 10 figure

Characterization of the low-lying 0(+) and 2(+) states in Ni-68 via beta decay of the low-spin Co-68 isomer

The low-energy structure of the neutron-rich nucleus Ni-68 has been investigated by measuring the beta decay of the low-spin isomer in Co-68 selectively produced in the decay chain of Mn-68. A revised level scheme has been built based on the clear identification of beta-gamma-E0 delayed coincidences. Transitions between the three lowest-lying 0(+) and 2(+) states are discussed on the basis of measured intensities or their upper limits for unobserved branches and state-of-the-art shell model calculations

Immediate implant placement and provisionalization:Aesthetic outcome 1 year after implant placement. A prospective clinical multicenter study

Contains fulltext : 220439.pdf (Publisher’s version ) (Closed access)BACKGROUND: Prospective aesthetic outcomes on a high number of patients after immediate implant placement and provisionalization (IIPP) are lacking. PURPOSE: To analyze the aesthetic outcome after IIPP. MATERIALS AND METHODS: One hundred consecutive patients with a failing maxillary incisor were provided with an immediately placed and provisionalized nonloaded implant using a flapless procedure and palatal implant positioning. The remaining gap buccally was filled with a bone substitute. Preoperatively (T0), 2 weeks postoperatively (T1), direct after placement of the permanent crown (T2), and 1 year after IIPP (T3), standardized light photographs were made. Change in aesthetic score was the primary outcome measure. Both the white aesthetic score (WES) and pink aesthetic score (PES) were used. RESULTS: In the first year postsurgery, the mean total-WES and total-PES scores raised from 4.5 to 8.2, and from 9.9 to 12.1, respectively. The mean PES scores for mesial and distal papilla, soft tissue marginal level, contour, color, and texture, raised significantly (P < .05), while the alveolar process contour, on average, remained stable from T0 to T3. CONCLUSIONS: Within the limitations of this 1-year research, it may be concluded that, following this minimal invasive IIPP procedure, a high aesthetic outcome was achieved