A search method for thin positions of links

We give a method for searching for thin positions of a given link.Comment: Published by Algebraic and Geometric Topology at http://www.maths.warwick.ac.uk/agt/AGTVol5/agt-5-42.abs.htm

Low Levels of Extra-Pair Paternity in a Neotropical Duetting Songbird, the Rufous-and-White Wren (Thryothorus rufalbus)

Molecular analyses have confirmed that the majority of socially monogamous birds follow a genetically promiscuous reproductive strategy. Most such studies, however, have addressed species of the North Temperate Zone; tropical species are grossly underrepresented, although most of Earth\u27s biodiversity is concentrated in the tropics. In this study, we describe the genetic mating strategy of the Rufous-and-white Wren (Thryothorus rufalbus), a socially monogamous duetting neotropical songbird. Over 8 years of studying a marked population in Costa Rica, we recorded genetic data from 51 broods. Microsatellite analysis of four variable loci revealed that the Rufous-and-white Wren follows a mixed reproductive strategy, where extra-pair young are found in a small minority of broods. Three of 158 nestlings (2%) were the result of extra-pair fertilizations; three of the 51 broods (6%) contained a nestling with alleles mismatched to its social father. We assigned paternity of two of the extra-pair nestlings to males in territories adjacent to the cuckolded males. During behavioral observations, we observed within-pair copulations rarely and extra-pair copulations never. The rate of extra-pair paternity we report here is lower than the average reported for socially monogamous birds in the North Temperate Zone but comparable to rates in three closely related tropical wrens. Rufous-and-white Wrens are renowned for their coordinated vocal duets. We compared rates of extra-pair paternity among socially monogamous tropical birds, contrasting four duetting species against twelve nonduetting species and found lower levels of extra-pair paternity in the former group, suggesting that duetting and low levels of extra-pair paternity are related

Sperm competition, but not major histocompatibility divergence, drive differential fertilization success between alternative reproductive tactics in Chinook salmon

Post-copulatory sexual selection processes, including sperm competition and cryptic female choice (CFC), can operate based on major histocompatibility (MH) genes. We investigated sperm competition between male alternative reproductive tactics (jack (sneaker) and hooknose (guard)) of Chinook salmon (Oncorhynchus tshawytscha). Using a full factorial design, we examined in vitro competitive fertilization success of paired jack and hooknose males at three time points after sperm activation (0, 15 and 60 seconds) to test for male competition, CFC and time effects on male fertilization success. We also examined egg-mediated CFC at two MH genes by examining both the relationship between competitive fertilization success and MH divergence as well as inheritance patterns of MH alleles in resulting offspring. We found that jacks sired more offspring than hooknose males at 0 seconds post-activation; however, jack fertilization success declined over time post-activation, suggesting a trade-off between sperm speed and longevity. Enhanced fertilization success of jacks (presumably via higher sperm quality) may serve to increase sneaker tactic competitiveness relative to dominant hooknose males. We also found evidence of egg-mediated CFC (i.e., female x male interaction) influencing competitive fertilization success, however CFC was not acting on the MH genes as we found no relationship between fertilization success and MH II β1 or MH I α1 divergence and we found no deviations from Mendelian inheritance of MH alleles in the offspring. Our study provides insight into evolutionary mechanisms influencing variation in male mating success within alternative reproductive tactics, thus underscoring different strategies that males can adopt to attain success

Bayesian total evidence dating reveals the recent crown radiation of penguins

The total-evidence approach to divergence-time dating uses molecular and morphological data from extant and fossil species to infer phylogenetic relationships, species divergence times, and macroevolutionary parameters in a single coherent framework. Current model-based implementations of this approach lack an appropriate model for the tree describing the diversification and fossilization process and can produce estimates that lead to erroneous conclusions. We address this shortcoming by providing a total-evidence method implemented in a Bayesian framework. This approach uses a mechanistic tree prior to describe the underlying diversification process that generated the tree of extant and fossil taxa. Previous attempts to apply the total-evidence approach have used tree priors that do not account for the possibility that fossil samples may be direct ancestors of other samples. The fossilized birth-death (FBD) process explicitly models the diversification, fossilization, and sampling processes and naturally allows for sampled ancestors. This model was recently applied to estimate divergence times based on molecular data and fossil occurrence dates. We incorporate the FBD model and a model of morphological trait evolution into a Bayesian total-evidence approach to dating species phylogenies. We apply this method to extant and fossil penguins and show that the modern penguins radiated much more recently than has been previously estimated, with the basal divergence in the crown clade occurring at ~12.7 Ma and most splits leading to extant species occurring in the last 2 million years. Our results demonstrate that including stem-fossil diversity can greatly improve the estimates of the divergence times of crown taxa. The method is available in BEAST2 (v. 2.4) www.beast2.org with packages SA (v. at least 1.1.4) and morph-models (v. at least 1.0.4).Comment: 50 pages, 6 figure