1,059 research outputs found
Ethnically diverse urban transmission networks of Neisseria gonorrhoeae without evidence of HIV serosorting
Objective We aimed to characterise gonorrhoea
transmission patterns in a diverse urban population
by linking genomic, epidemiological and antimicrobial
susceptibility data.
Methods Neisseria gonorrhoeae isolates from
patients attending sexual health clinics at Barts Health
NHS Trust, London, UK, during an 11-month period
underwent whole-genome sequencing and antimicrobial
susceptibility testing. We combined laboratory and
patient data to investigate the transmission network
structure.
Results One hundred and fifty-eight isolates from 158
patients were available with associated descriptive data.
One hundred and twenty-nine (82%) patients identified
as male and 25 (16%) as female; four (3%) records
lacked gender information. Self-described ethnicities
were: 51 (32%) English/Welsh/Scottish; 33 (21%)
white, other; 23 (15%) black British/black African/black,
other; 12 (8%) Caribbean; 9 (6%) South Asian; 6 (4%)
mixed ethnicity; and 10 (6%) other; data were missing
for 14 (9%). Self-reported sexual orientations were 82
(52%) men who have sex with men (MSM); 49 (31%)
heterosexual; 2 (1%) bisexual; data were missing for
25 individuals. Twenty-two (14%) patients were HIV
positive. Whole-genome sequence data were generated
for 151 isolates, which linked 75 (50%) patients to at
least one other case. Using sequencing data, we found
no evidence of transmission networks related to specific
ethnic groups (p=0.64) or of HIV serosorting (p=0.35).
Of 82 MSM/bisexual patients with sequencing data,
45 (55%) belonged to clusters of ≥2 cases, compared
with 16/44 (36%) heterosexuals with sequencing data
(p=0.06).
Conclusion We demonstrate links between 50% of
patients in transmission networks using a relatively
small sample in a large cosmopolitan city. We found no
evidence of HIV serosorting. Our results do not support
assortative selectivity as an explanation for differences in
gonorrhoea incidence between ethnic groups
Felling of individual freestanding nanoobjects using focused-ion-beam milling for investigations of structural and transport properties
We report that, to enable studies of their compositional, structural and electrical properties, freestanding individual nanoobjects can be selectively felled in a controllable way by the technique of low-current focused-ion-beam (FIB) milling with the ion beam at a chosen angle of incidence to the nanoobject. To demonstrate the suitability of the technique, we report results zigzag/straight tungsten nanowires grown vertically on support substrates and then felled for characterization. We also describe a systematic investigation of the effect of the experimental geometry and parameters on the felling process and on the induced wire-bending phenomenon. The method of felling freestanding nanoobjects using FIB is an advantageous new technique for enabling investigations of the properties of selected individual nanoobjects
Comparison of two different physical activity monitors
<p>Abstract</p> <p>Background</p> <p>Understanding the relationships between physical activity (PA) and disease has become a major area of research interest. Activity monitors, devices that quantify free-living PA for prolonged periods of time (days or weeks), are increasingly being used to estimate PA. A range of different activity monitors brands are available for investigators to use, but little is known about how they respond to different levels of PA in the field, nor if data conversion between brands is possible.</p> <p>Methods</p> <p>56 women and men were fitted with two different activity monitors, the Actigraph™ (Actigraph LLC; AGR) and the Actical™ (Mini-Mitter Co.; MM) for 15 days. Both activity monitors were fixed to an elasticized belt worn over the hip, with the anterior and posterior position of the activity monitors randomized. Differences between activity monitors and the validity of brand inter-conversion were measured by <it>t</it>-tests, Pearson correlations, Bland-Altman plots, and coefficients of variation (CV).</p> <p>Results</p> <p>The AGR detected a significantly greater amount of daily PA (216.2 ± 106.2 vs. 188.0 ± 101.1 counts/min, P < 0.0001). The average difference between activity monitors expressed as a CV were 3.1 and 15.5% for log-transformed and raw data, respectively. When a conversion equation was applied to convert datasets from one brand to another, the differences were no longer significant, with CV's of 2.2 and 11.7%, log-transformed and raw data, respectively.</p> <p>Conclusion</p> <p>Although activity monitors predict PA on the same scale (counts/min), the results between these two brands are not directly comparable. However, the data are comparable if a conversion equation is applied, with better results for log-transformed data.</p
Bacteriological quality of bottled drinking water versus municipal tap water in Dharan municipality, Nepal
A two-step mechanism for epigenetic specification of centromere identity and function
The basic determinant of chromosome inheritance, the centromere, is specified in many eukaryotes by an epigenetic mark. Using gene targeting in human cells and fission yeast, chromatin containing the centromere-specific histone H3 variant CENP-A is demonstrated to be the epigenetic mark that acts through a two-step mechanism to identify, maintain and propagate centromere function indefinitely. Initially, centromere position is replicated and maintained by chromatin assembled with the centromere-targeting domain (CATD) of CENP-A substituted into H3. Subsequently, nucleation of kinetochore assembly onto CATD-containing chromatin is shown to require either the amino- or carboxy-terminal tail of CENP-A for recruitment of inner kinetochore proteins, including stabilizing CENP-B binding to human centromeres or direct recruitment of CENP-C, respectively.National Institutes of Health grant: (GM 074150); Ludwig Institute for Cancer Research; European Molecular Biology Organization (EMBO) long-term fellowship
Search for a Technicolor omega_T Particle in Events with a Photon and a b-quark Jet at CDF
If the Technicolor omega_T particle exists, a likely decay mode is omega_T ->
gamma pi_T, followed by pi_T -> bb-bar, yielding the signature gamma bb-bar. We
have searched 85 pb^-1 of data collected by the CDF experiment at the Fermilab
Tevatron for events with a photon and two jets, where one of the jets must
contain a secondary vertex implying the presence of a b quark. We find no
excess of events above standard model expectations. We express the result of an
exclusion region in the M_omega_T - M_pi_T mass plane.Comment: 14 pages, 2 figures. Available from the CDF server (PS with figs):
http://www-cdf.fnal.gov/physics/pub98/cdf4674_omega_t_prl_4.ps
FERMILAB-PUB-98/321-
Measurement of B(t->Wb)/B(t->Wq) at the Collider Detector at Fermilab
We present a measurement of the ratio of top-quark branching fractions R= B(t
-> Wb)/B(t -> Wq), where q can be a b, s or a d quark, using lepton-plus-jets
and dilepton data sets with integrated luminosity of ~162 pb^{-1} collected
with the Collider Detector at Fermilab during Run II of the Tevatron. The
measurement is derived from the relative numbers of t-tbar events with
different multiplicity of identified secondary vertices. We set a lower limit
of R > 0.61 at 95% confidence level.Comment: 7 pages, 2 figures, published in Physical Review Letters; changes
made to be consistent with published versio
Search for ZZ and ZW Production in ppbar Collisions at sqrt(s) = 1.96 TeV
We present a search for ZZ and ZW vector boson pair production in ppbar
collisions at sqrt(s) = 1.96 TeV using the leptonic decay channels ZZ --> ll nu
nu, ZZ --> l l l' l' and ZW --> l l l' nu. In a data sample corresponding to an
integrated luminosity of 194 pb-1 collected with the Collider Detector at
Fermilab, 3 candidate events are found with an expected background of 1.0 +/-
0.2 events. We set a 95% confidence level upper limit of 15.2 pb on the cross
section for ZZ plus ZW production, compared to the standard model prediction of
5.0 +/- 0.4 pb.Comment: 7 pages, 2 figures. This version is accepted for publication by Phys.
Rev. D Rapid Communication
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