Precipitation is the main axis of tropical phylogenetic turnover across space and time

Early natural historians – Compte de Buffon, von Humboldt and De Candolle – established ecology and geography as two principal axes determining the distribution of groups of organisms, laying the foundations for biogeography over the subsequent 200 years, yet the relative importance of these two axes remains unresolved. Leveraging phylogenomic and global species distribution data for Mimosoid legumes, an pantropical plant clade of 3,400 species, we show that the water availability gradient from deserts to rainforests dictates turnover of lineages within continents across the tropics. We demonstrate that 95% of speciation occurs within a precipitation niche, showing profound phylogenetic niche conservatism, and that lineage turnover boundaries coincide with isohyets of precipitation. We reveal similar patterns on different continents, implying that evolution and dispersal follow universal processes.Fil: Ringelberg, Jens J. University of Zurich. Department of Systematic and Evolutionary Botany; SuizaFil: Koenen, Erik J.M. University of Zurich. Department of Systematic and Evolutionary Botany; Suiza. Université Libre de Bruxelles. Faculté des Sciences. Evolutionary Biology & Ecology; BélgicaFil: Sauter, Benjamín. University of Zurich. Department of Systematic and Evolutionary Botany; SuizaFil: Aebli, Anahita. University of Zurich. Department of Systematic and Evolutionary Botany; Suiza. Abteling Umweltschutz und Energie. Departement Bau und Umwelt; SuizaFil: Rando, Juliana G. Universidade Federal do Oeste da Bahia. Centro das Ciências Biológicas e da Saúde. Programa de Pós Graduação em Ciências Ambientais; BrasilFil: Iganci, João R. Universidade Federal de Pelotas. Campus Universitário Capão do Leão. Instituto de Biologia; Brasil. Universidade Federal do Rio Grande do Sul. Programa de Pós-Graduação em Botânica; BrasilFil: de Queiroz, Luciano P. Universidade Estadual de Feira de Santana. Departamento Ciências Biológicas; BrasilFil: Murphy, Daniel J. Royal Botanic Gardens Victoria: AustraliaFil: Gaudeul, Myriam. Institut de Systématique, Evolution, Biodiversité (ISYEB), MNHN-CNRS-SU-EPHE-UA: FranciaFil: Bruneau, Anne. Université de Montréal. Institut de Recherche en Biologie Végétale and Département de Sciences Biologiques; CanadáFil: Luckow, Melissa. Cornell University. School of Integrative Plant Science. Plant Biology Section; Estados UnidosFil: Morales, Matias. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Morón. Facultad de Agronomía y Ciencias Agroalimentarias; Argentin

Novel sources of Flavor Changed Neutral Currents in the 331RHN331_{RHN} model

Sources of Flavor Changed Neutral Currents (FCNC) naturally emerge from a well motivated framework called 3-3-1 with right-handed neutrinos model, $331_{RHN}$ for short, mediated by an extra neutral gauge boson $Z^{\prime}$. Following previous works we calculate these sources and in addition we derive new ones coming from CP-even and -odd neutral scalars which appear due to their non-diagonal interactions with the physical standard quarks. Furthermore we show that bounds related to the neutral mesons systems $K_L-K_S$ and $D_1^0 - D_2^0$ may be significantly strengthened in the presence of these new interactions allowing us to infer stronger constraints on the parameter space of the model.Comment: Published version. 10 pages, 6 figure

Search for Kosterlitz-Thouless transition in a triangular Ising antiferromagnet with further-neighbour ferromagnetic interactions

We investigate an antiferromagnetic triangular Ising model with anisotropic ferromagnetic interactions between next-nearest neighbours, originally proposed by Kitatani and Oguchi (J. Phys. Soc. Japan {\bf 57}, 1344 (1988)). The phase diagram as a function of temperature and the ratio between first- and second- neighbour interaction strengths is thoroughly examined. We search for a Kosterlitz-Thouless transition to a state with algebraic decay of correlations, calculating the correlation lengths on strips of width up to 15 sites by transfer-matrix methods. Phenomenological renormalization, conformal invariance arguments, the Roomany-Wyld approximation and a direct analysis of the scaled mass gaps are used. Our results provide limited evidence that a Kosterlitz-Thouless phase is present. Alternative scenarios are discussed.Comment: 10 pages, RevTeX 3; 11 Postscript figures (uuencoded); to appear in Phys. Rev. E (1995

Strong-disorder paramagnetic-ferromagnetic fixed point in the square-lattice +- J Ising model

We consider the random-bond +- J Ising model on a square lattice as a function of the temperature T and of the disorder parameter p (p=1 corresponds to the pure Ising model). We investigate the critical behavior along the paramagnetic-ferromagnetic transition line at low temperatures, below the temperature of the multicritical Nishimori point at T*= 0.9527(1), p*=0.89083(3). We present finite-size scaling analyses of Monte Carlo results at two temperature values, T=0.645 and T=0.5. The results show that the paramagnetic-ferromagnetic transition line is reentrant for T<T*, that the transitions are continuous and controlled by a strong-disorder fixed point with critical exponents nu=1.50(4) and eta=0.128(8), and beta = 0.095(5). This fixed point is definitely different from the Ising fixed point controlling the paramagnetic-ferromagnetic transitions for T>T*. Our results for the critical exponents are consistent with the hyperscaling relation 2 beta/nu - eta = d - 2 = 0.Comment: 32 pages, added refs and a discussion on hyperscalin

The role of melanin pathways in extremotolerance and virulence of <em>Fonsecaea</em> revealed by <em>de novo</em> assembly transcriptomics using illumina paired-end sequencing

AbstractMelanisation has been considered to be an important virulence factor of Fonsecaea monophora. However, the biosynthetic mechanisms of melanisation remain unknown. We therefore used next generation sequencing technology to investigate the transcriptome and digital gene expression data, which are valuable resources to better understand the molecular and biological mechanisms regulating melanisation in F. monophora. We performed de novo transcriptome assembly and digital gene expression (DGE) profiling analyses of parent (CBS 122845) and albino (CBS 125194) strains using the Illumina RNA-seq system. A total of 17 352 annotated unigenes were found by BLAST search of NR, Swiss-Prot, Gene Ontology, Clusters of Orthologous Groups and Kyoto Encyclopedia of Genes and Genomes (KEGG) (E-value <1e‒5). A total of 2 283 unigenes were judged to be the differentially expressed between the two genotypes. We identified most of the genes coding for key enzymes involved in melanin biosynthesis pathways, including polyketide synthase (pks), multicopper oxidase (mco), laccase, tyrosinase and homogentisate 1,2-dioxygenase (hmgA). DEG analysis showed extensive down-regulation of key genes in the DHN pathway, while up-regulation was noted in the DOPA pathway of the albino mutant. The transcript levels of partial genes were confirmed by real time RT-PCR, while the crucial role of key enzymes was confirmed by either inhibitor or substrate tests in vitro. Meanwhile, numbers of genes involved in light sensing, cell wall synthesis, morphology and environmental stress were identified in the transcriptome of F. monophora. In addition, 3 353 SSRs (Simple Sequence Repeats) markers were identified from 21 600 consensus sequences. Blocking of the DNH pathway is the most likely reason of melanin deficiency in the albino strain, while the production of pheomelanin and pyomelanin were probably regulated by unknown transcription factors on upstream of both pathways. Most of genes involved in environmental tolerance to oxidants, irradiation and extreme temperatures were also assembled and annotated in transcriptomes of F. monophora. In addition, thousands of identified cSSR (combined SSR) markers will favour further genetic linkage studies. In conclusion, these data will contribute to understanding the regulation of melanin biosynthesis and help to improve the studies of pathogenicity of F. monophora