154 research outputs found
Prevalence of QoI resistance and mtDNA diversity in the Irish Zymoseptoria tritici population
peer-reviewedThe emergence and spread of Quinone outside Inhibitor (QoI) fungicide resistance in the Irish Zymoseptoria tritici population in the early 2000s had immediate impacts on the efficacy of the entire group of fungicides for the control of septoria tritici blotch. As a result, a dramatic reduction in the quantities applied to winter wheat occurred in the following seasons. Even in the absence of these fungicides, the frequency of the resistance allele, G143A in the pathogens mtDNA has remained exceptionally high (>97%), and as such, it can be anticipated that continued poor efficacy of current QoI fungicides will be observed. Amongst the isolates with G143A, differences in sensitivity to the QoI pyraclostrobin were observed in vitro. The addition of the alternative oxidase (AOX) inhibitor salicylhydroxamic acid increased sensitivity in these isolates, suggesting some continued impairment of respiration by the QoI fungicides, albeit weak. Interestingly, amongst those tested, the strains from a site with a high frequency of inserts in the MFS1 transporter gene known to enhance QoI efflux did not exhibit this increase in sensitivity. A total of 19 mtDNA haplotypes were detected amongst the 2017 strain collection. Phylogenetic analysis confirmed the suggestion of a common ancestry of all the haplotypes, even though three of the haplotypes contained at least one sensitive strain
Fast Searching in Packed Strings
Given strings and the (exact) string matching problem is to find all
positions of substrings in matching . The classical Knuth-Morris-Pratt
algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear
time which is optimal if we can only read one character at the time. However,
most strings are stored in a computer in a packed representation with several
characters in a single word, giving us the opportunity to read multiple
characters simultaneously. In this paper we study the worst-case complexity of
string matching on strings given in packed representation. Let be
the lengths and , respectively, and let denote the size of the
alphabet. On a standard unit-cost word-RAM with logarithmic word size we
present an algorithm using time O\left(\frac{n}{\log_\sigma n} + m +
\occ\right). Here \occ is the number of occurrences of in . For this improves the bound of the Knuth-Morris-Pratt algorithm.
Furthermore, if our algorithm is optimal since any
algorithm must spend at least \Omega(\frac{(n+m)\log
\sigma}{\log n} + \occ) = \Omega(\frac{n}{\log_\sigma n} + \occ) time to
read the input and report all occurrences. The result is obtained by a novel
automaton construction based on the Knuth-Morris-Pratt algorithm combined with
a new compact representation of subautomata allowing an optimal
tabulation-based simulation.Comment: To appear in Journal of Discrete Algorithms. Special Issue on CPM
200
Molecular cloning and transcriptional regulation of ompT , a ToxR-repressed gene in Vibrio cholerae
Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/72189/1/j.1365-2958.2000.01699.x.pd
Curved Tails in Polymerization-Based Bacterial Motility
The curved actin ``comet-tail'' of the bacterium Listeria monocytogenes is a
visually striking signature of actin polymerization-based motility. Similar
actin tails are associated with Shigella flexneri, spotted-fever Rickettsiae,
the Vaccinia virus, and vesicles and microspheres in related in vitro systems.
We show that the torque required to produce the curvature in the tail can arise
from randomly placed actin filaments pushing the bacterium or particle. We find
that the curvature magnitude determines the number of actively pushing
filaments, independent of viscosity and of the molecular details of force
generation. The variation of the curvature with time can be used to infer the
dynamics of actin filaments at the bacterial surface.Comment: 8 pages, 2 figures, Latex2
Muscle Loss: The New Malnutrition Challenge in Clinical Practice
Recent definitions of malnutrition include low muscle mass within its diagnostic criteria. In fact, malnutrition is one of the main risk factors of skeletal muscle loss contributing to the onset of sarcopenia. However, differences in the screening and diagnosis of skeletal muscle loss, especially as a result of malnutrition in clinical and community settings, still occur mainly as techniques and thresholds used vary in clinical practice. The objectives of this position paper are firstly to emphasize the link between skeletal muscle loss and malnutrition-related conditions and secondly to raise awareness for the timely identification of loss of skeletal muscle mass and function in high risk populations. Thirdly to recognize the need to implement appropriate nutritional strategies for prevention and treatment of skeletal muscle loss and malnutrition across the healthcare continuum. Malnutrition needs to be addressed clinically as a muscle-related disorder and clinicians should integrate nutritional assessment with muscle mass measurements for optimal evaluation of these two interrelated entities to tailor interventions appropriately. The design of monitoring/evaluation and discharge plans need to include multimodal interventions with nutrition and physical exercise that are key to preserve patient’s muscle mass and function in clinical and community settings
Active Brownian Particles. From Individual to Collective Stochastic Dynamics
We review theoretical models of individual motility as well as collective
dynamics and pattern formation of active particles. We focus on simple models
of active dynamics with a particular emphasis on nonlinear and stochastic
dynamics of such self-propelled entities in the framework of statistical
mechanics. Examples of such active units in complex physico-chemical and
biological systems are chemically powered nano-rods, localized patterns in
reaction-diffusion system, motile cells or macroscopic animals. Based on the
description of individual motion of point-like active particles by stochastic
differential equations, we discuss different velocity-dependent friction
functions, the impact of various types of fluctuations and calculate
characteristic observables such as stationary velocity distributions or
diffusion coefficients. Finally, we consider not only the free and confined
individual active dynamics but also different types of interaction between
active particles. The resulting collective dynamical behavior of large
assemblies and aggregates of active units is discussed and an overview over
some recent results on spatiotemporal pattern formation in such systems is
given.Comment: 161 pages, Review, Eur Phys J Special-Topics, accepte
Separation of the Longitudinal and Transverse Cross Sections in the p(ee'K)Lambda and p(ee'K)Sigma Reactions
We report measurements of cross sections for the reaction p(e,e'K)Y, for both
the Lambda and Sigma_0 hyperon states, at an invariant mass of W=1.84 GeV and
four-momentum transfers 0.5<Q2<2 (GeV/c)2. Data were taken for three values of
virtual photon polarization, allowing the decomposition of the cross sections
into longitudinal and transverse components. The Lambda data is a revised
analysis of prior work, whereas the Sigma_0 results have not been previously
reported.Comment: 17 pages, 18 figures, REVTEX 4, submitted to Physical Review
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