Orbital Period Determinations for Four SMC Be/X-ray Binaries

We present an optical and X-ray study of four Be/X-ray binaries located in the Small Magellanic Cloud (SMC). OGLE I-band data of up to 11 years of semi-continuous monitoring has been analysed for SMC X-2, SXP172 and SXP202B, providing both a measurement of the orbital period (Porb = 18.62, 68.90, and 229.9 days for the pulsars respectively) and a detailed optical orbital profile for each pulsar. For SXP172 this has allowed a direct comparison of the optical and X-ray emission seen through regular RXTE monitoring, revealing that the X-ray outbursts precede the optical by around 7 days. Recent X-ray studies by XMM-Newton have identified a new source in the vicinity of SXP15.3 raising doubt on the identification of the optical counterpart to this X-ray pulsar. Here we present a discussion of the observations that led to the proposal of the original counterpart and a detailed optical analysis of the counterpart to the new X-ray source, identifying a 21.7 d periodicity in the OGLE I-band data. The optical characteristics of this star are consistent with that of a SMC Be/X-ray binary. However, this star was rejected as the counterpart to SXP15.3 in previous studies due to the lack of H{\alpha} emission.Comment: Accepted for publication in MNRAS, 11 pages, 17 figure

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification

Understanding genome organization and gene regulation requires insight into RNA transcription, processing and modification. We adapted nanopore direct RNA sequencing to examine RNA from a wild-type accession of the model plant Arabidopsis thaliana and a mutant defective in mRNA methylation (m6A). Here we show that m6A can be mapped in full-length mRNAs transcriptome-wide and reveal the combinatorial diversity of cap-associated transcription start sites, splicing events, poly(A) site choice and poly(A) tail length. Loss of m6A from 3’ untranslated regions is associated with decreased relative transcript abundance and defective RNA 30 end formation. A functional consequence of disrupted m6A is a lengthening of the circadian period. We conclude that nanopore direct RNA sequencing can reveal the complexity of mRNA processing and modification in full-length single molecule reads. These findings can refine Arabidopsis genome annotation. Further, applying this approach to less well-studied species could transform our understanding of what their genomes encode

A return to strong radio flaring by Circinus X-1 observed with the Karoo Array Telescope test array KAT-7

Circinus X-1 is a bright and highly variable X-ray binary which displays strong and rapid evolution in all wavebands. Radio flaring, associated with the production of a relativistic jet, occurs periodically on a ~17-day timescale. A longer-term envelope modulates the peak radio fluxes in flares, ranging from peaks in excess of a Jansky in the 1970s to an historic low of milliJanskys during the years 1994 to 2007. Here we report first observations of this source with the MeerKAT test array, KAT-7, part of the pathfinder development for the African dish component of the Square Kilometre Array (SKA), demonstrating successful scientific operation for variable and transient sources with the test array. The KAT-7 observations at 1.9 GHz during the period 13 December 2011 to 16 January 2012 reveal in temporal detail the return to the Jansky-level events observed in the 1970s. We compare these data to contemporaneous single-dish measurements at 4.8 and 8.5 GHz with the HartRAO 26-m telescope and X-ray monitoring from MAXI. We discuss whether the overall modulation and recent dramatic brightening is likely to be due to an increase in the power of the jet due to changes in accretion rate or changing Doppler boosting associated with a varying angle to the line of sight.Comment: 7 pages, 5 figures, accepted for publication in MNRAS 14 May 201

INTEGRAL observations of the Small Magellanic Cloud

The first INTEGRAL observations of the Small Magellanic Cloud (carried out in 2003) are reported in which two sources are clearly detected. The first source, SMC X-1, shows a hard X-ray eclipse and measurements of its pulse period indicate a continuation of the long-term spin-up now covering ~30 years. The second source is likely to be a high mass X-ray binary, and shows a potential periodicity of 6.8s in the IBIS lightcurve. An exact X-ray or optical counterpart cannot be designated, but a number of proposed counterparts are discussed. One of these possible counterparts shows a strong coherent optical modulation at ~2.7d, which, together with the measured hard X-ray pulse period, would lead to this INTEGRAL source being classified as the fourth known high mass Roche lobe overflow system.Comment: Accepted for publication in MNRA

Optical Follow-up of New SMC Wing Be/X-ray Binaries

We investigate the optical counterparts of recently discovered Be/X-ray binaries in the Small Magellanic Cloud. In total four sources, SXP101, SXP700, SXP348 and SXP65.8 were detected during the Chandra Survey of the Wing of the SMC. SXP700 and SXP65.8 were previously unknown. Many optical ground based telescopes have been utilised in the optical follow-up, providing coverage in both the red and blue bands. This has led to the classification of all of the counterparts as Be stars and confirms that three lie within the Galactic spectral distribution of known Be/X-ray binaries. SXP101 lies outside this distribution becoming the latest spectral type known. Monitoring of the Halpha emission line suggests that all the sources bar SXP700 have highly variable circumstellar disks, possibly a result of their comparatively short orbital periods. Phase resolved X-ray spectroscopy has also been performed on SXP65.8, revealing that the emission is indeed harder during the passage of the X-ray beam through the line of sight.Comment: 9 pages, 9 figures, 2 tables, accepted for publication in MNRA

Analysing the Suzaku Spectra of the Broad-Line Seyfert 1 Galaxy CBS 126

We analysed new simultaneous \emph{Suzaku} and \emph{Swift} data of the Broad Line Seyfert 1 (BLS1) galaxy CBS 126. A clear Fe emission line and a strong soft excess are present in the source spectra. We fit the spectra with a relativistic reflection model and find the model tends to fit the data with a high iron abundance possibly due to the large soft excess present. By checking the difference and the RMS spectra, we find there is likely an absorption edge at $\sim$ 0.89 keV, which might be caused by oxygen or neon. We also produced an analysis of the time-resolved spectra in order to examine the existence of the edge. Although high iron abundance is required more in the time-resolved spectra, a model of solar iron abundance together with an absorption edge gives a more physical explanation. Variation of the ionisation parameter is an alternative, plausible explanation for the excess seen in the difference spectra. It is difficult to know if there are warm absorbers in this source from the current data. To further investigate the presence of possible warm absorbers, higher signal-to-noise low-energy data are needed. The work presented here tentatively suggests that the spectra of a BLS1 can be explained by a relativistic reflection model similar to that often seen in their narrow-line cousins.Comment: 10 pages, 12 figures, accepted for publication in MNRA

The Orbital Solution and Spectral Classification of the High-Mass X-Ray Binary IGR J01054-7253 in the Small Magellanic Cloud

We present X-ray and optical data on the Be/X-ray binary (BeXRB) pulsar IGR J01054-7253 = SXP11.5 in the Small Magellanic Cloud (SMC). Rossi X-ray Timing Explorer (RXTE) observations of this source in a large X-ray outburst reveal an 11.483 +/- 0.002s pulse period and show both the accretion driven spin-up of the neutron star and the motion of the neutron star around the companion through Doppler shifting of the spin period. Model fits to these data suggest an orbital period of 36.3 +/- 0.4d and Pdot of (4.7 +/- 0.3) x 10^{-10} ss^{-1}. We present an orbital solution for this system, making it one of the best described BeXRB systems in the SMC. The observed pulse period, spin-up and X-ray luminosity of SXP11.5 in this outburst are found to agree with the predictions of neutron star accretion theory. Timing analysis of the long-term optical light curve reveals a periodicity of 36.70 +/- 0.03d, in agreement with the orbital period found from the model fit to the X-ray data. Using blue-end spectroscopic observations we determine the spectral type of the counterpart to be O9.5-B0 IV-V. This luminosity class is supported by the observed V-band magnitude. Using optical and near-infrared photometry and spectroscopy, we study the circumstellar environment of the counterpart in the months after the X-ray outburst.Comment: 12 pages, 13 figures and 3 tables. This paper has been accepted for publication in MNRA

Now you see it, now you don't - the circumstellar disk in the GRO J1008--57 system

Multiwavelength observations are reported here of the Be/X-ray binary pulsar system GRO J1008-57. Over ten years worth of data are gathered together to show that the periodic X-ray outbursts are dependant on both the binary motion and the size of the circumstellar disk. In the first instance an accurate orbital solution is determined from pulse periods, and in the second case the strength and shape of the Halpha emission line is shown to be a valuable indicator of disk size and its behaviour. Furthermore, the shape of the emission line permits a direct determination of the disk size which is in good agreement with theoretical estimates. A detailed study of the pulse period variations during outbursts determined the binary period to be 247.8, in good agreement with the period determined from the recurrence of the outbursts.Comment: Accepted for publication in MNRA

INTEGRAL deep observations of the Small Magellanic Cloud

Deep observations of the Small Magellanic Cloud (SMC) and region were carried out in the hard X-ray band by the INTEGRAL observatory in 2008-2009. The field of view of the instrument permitted simultaneous coverage of the entire SMC and the eastern end of the Magellanic Bridge. In total, INTEGRAL detected seven sources in the SMC and five in the Magellanic Bridge; the majority of the sources were previously unknown systems. Several of the new sources were detected undergoing bright X- ray outbursts and all the sources exhibited transient behaviour except the supergiant system SMC X-1. They are all thought to be High Mass X-ray Binary (HMXB) systems in which the compact object is a neutron star.Comment: 7 pages, 10 figures Accepted for publication in MNRA