Single molecule study of the DNA denaturation phase transition in the force-torsion space

We use the "magnetic tweezers" technique to reveal the structural transitions that DNA undergoes in the force-torsion space. In particular, we focus on regions corresponding to negative supercoiling. These regions are characterized by the formation of so-called denaturation bubbles, which have an essential role in the replication and transcription of DNA. We experimentally map the region of the force-torsion space where the denaturation takes place. We observe that large fluctuations in DNA extension occur at one of the boundaries of this region, i.e., when the formation of denaturation bubbles and of plectonemes are competing. To describe the experiments, we introduce a suitable extension of the classical model. The model correctly describes the position of the denaturation regions, the transition boundaries, and the measured values of the DNA extension fluctuations.Comment: 5 pages and 4 figur

Coefficient of thermal expansion of nanostructured tungsten based coatings assessed by thermally induced substrate curvature method

The in plane coefficient of thermal expansion (CTE) and the residual stress of nanostructured W based coatings are extensively investigated. The CTE and the residual stresses are derived by means of an optimized ad-hoc developed experimental setup based on the detection of the substrate curvature by a laser system. The nanostructured coatings are deposited by Pulsed Laser Deposition. Thanks to its versatility, nanocrystalline W metallic coatings, ultra-nano-crystalline pure W and W-Tantalum coatings and amorphous-like W coatings are obtained. The correlation between the nanostructure, the residual stress and the CTE of the coatings are thus elucidated. We find that all the samples show a compressive state of stress that decreases as the structure goes from columnar nanocrystalline to amorphous-like. The CTE of all the coatings is higher than the one of the corresponding bulk W form. In particular, as the grain size shrinks, the CTE increases from 5.1 10$^{-6}$ K$^{-1}$ for nanocrystalline W to 6.6 10$^{-6}$ K$^{-1}$ in the ultra-nano-crystalline region. When dealing with amorphous W, the further increase of the CTE is attributed to a higher porosity degree of the samples. The CTE trend is also investigated as function of materials stiffness. In this case, as W coatings become softer, the easier they thermally expand.Comment: The research leading to these results has also received funding from the European Research Council Consolidator Grant ENSURE (ERC-2014-CoG No. 647554

Mean curvature flow with triple junctions in higher space dimensions

We consider mean curvature flow of n-dimensional surface clusters. At (n-1)-dimensional triple junctions an angle condition is required which in the symmetric case reduces to the well-known 120 degree angle condition. Using a novel parametrization of evolving surface clusters and a new existence and regularity approach for parabolic equations on surface clusters we show local well-posedness by a contraction argument in parabolic Hoelder spaces.Comment: 31 pages, 2 figure

Regular Oscillation Sub-spectrum of Rapidly Rotating Stars

We present an asymptotic theory that describes regular frequency spacings of pressure modes in rapidly rotating stars. We use an asymptotic method based on an approximate solution of the pressure wave equation constructed from a stable periodic solution of the ray limit. The approximate solution has a Gaussian envelope around the stable ray, and its quantization yields the frequency spectrum. We construct semi-analytical formulas for regular frequency spacings and mode spatial distributions of a subclass of pressure modes in rapidly rotating stars. The results of these formulas are in good agreement with numerical data for oscillations in polytropic stellar models. The regular frequency spacings depend explicitly on internal properties of the star, and their computation for different rotation rates gives new insights on the evolution of mode frequencies with rotation.Comment: 14 pages, 10 figure

Characterization of anisotropic nano-particles by using depolarized dynamic light scattering in the near field

Light scattering techniques are widely used in many fields of condensed and sof t matter physics. Usually these methods are based on the study of the scattered light in the far field. Recently, a new family of near field detection schemes has been developed, mainly for the study of small angle light scattering. These techniques are based on the detection of the light intensity near to the sample, where light scattered at different directions overlaps but can be distinguished by Fourier transform analysis. Here we report for the first time data obtained with a dynamic near field scattering instrument, measuring both polarized and depolarized scattered light. Advantages of this procedure over the traditional far field detection include the immunity to stray light problems and the possibility to obtain a large number of statistical samples for many different wave vectors in a single instantaneous measurement. By using the proposed technique we have measured the translational and rotational diffusion coefficients of rod-like colloidal particles. The obtained data are in very good agreement with the data acquired with a traditional light scattering apparatus.Comment: Published in Optics Express. This version has changes in bibliograph

V39: an unusual object in the field of IC 1613

The variable star V39 in the field of IC 1613 is discussed in the light of the available photometric and new spectroscopic data. It has strong emission Balmer lines, and the observed characteristics could be explained by a W Vir pulsating star with a period of 14.341 d, located at more than 115 kpc, that is in the very outer halo of our Galaxy. It should have an apparent companion, a long period (1118d) red variable, belonging to IC 1613. The main uncertainty in this interpretation is an emission feature at 668.4 nm, which we tentatively identified as a He I line.Comment: 5 pages; accepted for publication in Astronomy & Astrophysic

Discovery of unusual pulsations in the cool, evolved Am stars HD 98851 and HD 102480

The chemically peculiar (CP) stars HD 98851 and HD 102480 have been discovered to be unusual pulsators during the ``Naini Tal Cape Survey'' programme to search for pulsational variability in CP stars. Time series photometric and spectroscopic observations of these newly discovered stars are reported here. Fourier analyses of the time series photometry reveal that HD 98851 is pulsating mainly with frequencies 0.208 mHz and 0.103 mHz, and HD 102480 is pulsating with frequencies 0.107 mHz, 0.156 mHz and 0.198 mHz. The frequency identifications are all subject to 1 d$^{-1}$ cycle count ambiguities. We have matched the observed low resolution spectra of HD 98851 and HD 102480 in the range 3500-7400 \AA with theoretical synthetic spectra using Kurucz models with solar metallicity and a micro-turbulent velocity 2 km s$^{-1}$. These yield $T_{eff}=7000\pm250$ K, log $g=3.5 \pm 0.5$ for HD 98851 and $T_{eff} = 6750 \pm 250$ K, log $g = 3.0 \pm 0.5$ for HD 102480. We determined the equivalent H-line spectral class of these stars to be F1 IV and F3 III/IV, respectively. A comparison of the location of HD 98851 and HD 102480 in the HR diagram with theoretical stellar evolutionary tracks indicates that both stars are about 1-Gyr-old, 2-$M_{\odot}$ stars that lie towards the red edge of the $\delta$ Sct instability strip. We conclude that HD 98851 and HD 102480 are cool, evolved Am pulsators. The light curves of these pulsating stars have alternating high and low amplitudes, nearly harmonic (or sub-harmonic) period ratios, high pulsational overtones and Am spectral types. This is unusual for both Am and $\delta$ Sct pulsators, making these stars interesting objects.Comment: 9 pages, 6 Figures, Accepted for publication in MNRA

The MACHO Project LMC Variable Star Inventory. VI. The Second-overtone Mode of Cepheid Pulsation From First/Second Overtone (FO/SO) Beat Cepheids

MACHO Project photometry of 45 LMC FO/SO beat Cepheids which pulsate in the first and second overtone (FO and SOo, respectively) has been analysed to determine the lightcurve characteristics for the SO mode of Cepheid pulsation. We predict that singly-periodic SO Cepheids will have nearly sinusoidal lightcurves; that we will only be able to discern SO Cepheids from fundamental (F) and (FO) Cepheids for P <= 1.4 days; and that the SO distribution will overlap the short-period edge of the LMC FO Cepheid period-luminosity relation (when both are plotted as a function of photometric period). We also report the discovery of one SO Cepheid candidate, MACHO*05:03:39.6$-$70:04:32, with a photometric period of 0.775961 +/- 0.000019 days and an instrumental amplitude of 0.047 +/- 0.009 mag in V.Comment: 23 pages, 7 Encapsulated PostScript figures. Accepted for publication in the Astrophysical Journa

The effects of an intronic polymorphism in TOMM40 and APOE genotypes in sporadic inclusion body myositis.

A previous study showed that, in carriers of the apolipoprotein E (APOE) genotype ε3/ε3 or ε3/ε4, the presence of a very long (VL) polyT repeat allele in "translocase of outer mitochondrial membrane 40" (TOMM40) was less frequent in patients with sporadic inclusion body myositis (sIBM) compared with controls and associated with a later age of sIBM symptom onset, suggesting a protective effect of this haplotype. To further investigate the influence of these genetic factors in sIBM, we analyzed a large sIBM cohort of 158 cases as part of an International sIBM Genetics Study. No significant association was found between APOE or TOMM40 genotypes and the risk of developing sIBM. We found that the presence of at least 1 VL polyT repeat allele in TOMM40 was significantly associated with about 4 years later onset of sIBM symptoms. The age of onset was delayed by 5 years when the patients were also carriers of the APOE genotype ε3/ε3. In addition, males were likely to have a later age of onset than females. Therefore, the TOMM40 VL polyT repeat, although not influencing disease susceptibility, has a disease-modifying effect on sIBM, which can be enhanced by the APOE genotype ε3/ε3