The open pan-genome architecture and virulence landscape of Mycobacterium bovis

Animal tuberculosis (TB) is an emergent disease caused by Mycobacterium bovis, one of the animal-adapted ecotypes of the Mycobacterium tuberculosis complex (MTC). In this work, whole-genome comparative analyses of 70 M. bovis were performed to gain insights into the pan-genome architecture. The comparison across M. bovis predicted genome composition enabled clustering into the core- and accessory-genome components, with 2736 CDS for the former, while the accessory moiety included 3897 CDS, of which 2656 are restricted to one/two genomes only. These analyses predicted an open pan-genome architecture, with an average of 32 CDS added by each genome and show the diversification of discrete M. bovis subpopulations supported by both core- and accessory-genome components. The functional annotation of the pan-genome classified each CDS into one or several COG (Clusters of Orthologous Groups) categories, revealing ‘transcription’ (total average CDSs, n=258), ‘lipid metabolism and transport’ (n=242), ‘energy production and conversion’ (n=214) and ‘unknown function’ (n=876) as the most represented. The closer analysis of polymorphisms in virulence-related genes in a restrict group of M. bovis from a multi-host system enabled the identification of clade-monomorphic non-synonymous SNPs, illustrating clade-specific virulence landscapes and correlating with disease severity. This first comparative pan-genome study of a diverse collection of M. bovis encompassing all clonal complexes indicates a high percentage of accessory genes and denotes an open, dynamic non-conservative pan-genome structure, with high evolutionary potential, defying the canons of MTC biology. Furthermore, it shows that M. bovis can shape its virulence repertoire, either by acquisition and loss of genes or by SNP-based diversification, likely towards host immune evasion, adaptation and persistence.info:eu-repo/semantics/publishedVersio

Modulating intermolecular interactions and rheological properties in silk fibroin using ultrasound frequencies

info:eu-repo/semantics/draf

Inventory of attitudes toward seeking mental health services: psychometric properties among adolescents

Mental health is an essential element of wellness; however, some populations are more vulnerable to mental health problems. Suicide is the second-highest cause of death in young people and help-seeking unwillingness is a significant obstacle to mental health interventions. Young people are especially reluctant to seek help and negative attitudes stand out as help-seeking barriers, highlighting the importance of evaluating these constructs. The Inventory of Attitudes toward Seeking Mental Health Services (IASMHS) is a measure that evaluates help-seeking attitudes; nevertheless, it lacks applicability in Portuguese youth. This study aims to explore the psychometric characteristics of the IASMHS in 750 Portuguese adolescents (52.3% female, Mage = 14.67), through exploratory and confirmatory factor analysis, and reliability and validity analyses. Results suggest that a three-factor structure was adequate, those factors being help-seeking propensity, indifference to stigma, and psychological openness. The IASMHS was shortened to 20 items and revealed satisfactory properties regarding internal consistency, convergent/discriminant validity, and temporal stability. These findings validate the IASMHS as an adequate tool in the assessment of young people’s help-seeking attitudes.info:eu-repo/semantics/publishedVersio

Contributo para o conhecimento da biodiversidade marinha da ilha das Flores

XIII Expedição Científica do Departamento de Biologia - Flores e Corvo 2007.No âmbito da XIII Expedição Científica Flores e Corvo/2007, organizada pelo Departamento de Biologia da Universidade dos Açores, efectuaram-se várias observações e recolhas de organismos marinhos, utilizando 3 metodologias: mergulho (bentos), arrasto (plâncton) e prospecção no intertidal

Light microclimate-driven changes at transcriptional level in photosynthetic grape berry tissues

Viticulture practices that change the light distribution in the grapevine canopy can interfere with several physiological mechanisms, such as grape berry photosynthesis and other metabolic pathways, and consequently impact the berry biochemical composition, which is key to the final wine quality. We previously showed that the photosynthetic activity of exocarp and seed tissues from a white cultivar (Alvarinho) was in fact responsive to the light microclimate in the canopy (low and high light, LL and HL, respectively), and that these different light microclimates also led to distinct metabolite profiles, suggesting a berry tissue-specific interlink between photosynthesis and metabolism. In the present work, we analyzed the transcript levels of key genes in exocarps and seed integuments of berries from the same cultivar collected from HL and LL microclimates at three developmental stages, using real-time qPCR. In exocarp, the expression levels of genes involved in carbohydrate metabolism (VvSuSy1), phenylpropanoid (VvPAL1), stilbenoid (VvSTS1), and flavan-3-ol synthesis (VvDFR, VvLAR2, and VvANR) were highest at the green stage. In seeds, the expression of several genes associated with both phenylpropanoid (VvCHS1 and VvCHS3) and flavan-3-ol synthesis (VvDFR and VvLAR2) showed a peak at the véraison stage, whereas that of RuBisCO was maintained up to the mature stage. Overall, the HL microclimate, compared to that of LL, resulted in a higher expression of genes encoding elements associated with both photosynthesis (VvChlSyn and VvRuBisCO), carbohydrate metabolism (VvSPS1), and photoprotection (carotenoid pathways genes) in both tissues. HL also induced the expression of the VvFLS1 gene, which was translated into a higher activity of the FLS enzyme producing flavonol-type flavonoids, whereas the expression of several other flavonoid pathway genes (e.g., VvCHS3, VvSTS1, VvDFR, and VvLDOX) was reduced, suggesting a specific role of flavonols in photoprotection of berries growing in the HL microclimate. This work suggests a possible link at the transcriptional level between berry photosynthesis and pathways of primary and secondary metabolism, and provides relevant information for improving the management of the light microenvironment at canopy level of the grapes.This research and the APC was funded by FCT—Portuguese Foundation for Science and Technology, grant provided to Andreia Garrido (PD/BD/128275/2017), under the Doctoral Programme “Agricultural Production Chains—from fork to farm” (PD/00122/2012), and by the European Social Funds and the Regional Operational Programme Norte 2020.info:eu-repo/semantics/publishedVersio