The Environment Recording Unit in coral skeletons – a synthesis of structural and chemical evidences for a biochemically driven, stepping-growth process in fibres

International audienceThis paper gathers a series of structural and biochemical in situ characterizations carried out to improve our knowledge of the fine scale growth patterns of fibres in coral skeletons. The resulting data show a clear correspondence between the mineral subunits of fibres and the spatial distribution of organic macromolecules. New observations using atomic force microscope confirm the close relationship between mineral and organic phases at the nanometre scale. Synthesis of these data results in a significant change in our concept of the mineralization process in coral skeletons. In contrast to the usual view of an aggregate of purely mineral units independently growing by simple chemical precipitation, coral fibres appear to be fully controlled structures. Their growth process is based on cyclic secretion of mineralizing compounds by the polyp basal ectoderm. These biochemical components of the coral fibres, in which sulfated acidic proteoglycans probably play a major role, are repeatedly produced (proteoglycans are those glycoproteins whose carbohydrate moieties consist of long unbranched chains of sulfated amino sugars). This results in a stepping growth mode of fibres and a layered global organization of coral skeletons. Therefore, in contrast to the widely accepted geochemical interpretation, we propose a fibre growth model that places coral skeletons among the typical ''matrix mediated'' structures. The crystal-like fibres are built by superimposition of few micron-thick growth layers. A biomineralization cycle starts by the secretion of a mineralizing matrix and the final step is the crystallization phase, during which mineral material grows onto the organic framework. Thus, each growth layer is the actual Environment Recording Unit. From a practical standpoint, these results may contribute to develop a new high resolution approach of the environment recording by coral skeletons

Oxygen isotope equilibrium in brachiopod shell fibres in the context of biological control

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The environment recording unit in coral skeletons: structural and chemical evidences of a biochemically driven stepping-growth process in coral fibres

International audienceTo improve our understanding of the environment recording by scleractinian corals, a detailed study of the skeleton microstructure has been carried out. A series of physico-chemical in situ characterizations was made, an approach that provides us with structural and biochemical information at the micrometric and nanometric scales. Gathering of these data results in a significant change in our concept of the growth of coral skeletons. In contrast to the usual view of an aggregate of purely mineral units (the coral fibres) independently growing by a simple chemical precipitation, coral skeletons appear to be biochemically controlled structures. Both structural and biochemical data reveal the micron-scaled stepping growth-mode of fibres, and its global coordination. In this process, sulfated acidic proteoglycans probably play a major role, due to their ability to create polymeric frameworks. Atomic force microscopy confirms the close relationship of organic and mineral phases at the nanometric scale. A new microstructural model of coral skeleton formation is proposed, that places coral skeletons among the typical "matrix mediated structures". From a practical standpoint, these results may contribute to develop a new high resolution approach in the study of paleoenvironments

Combinaison de la modélisation biophysique et de marquages isotopiques pour estimer la connectivité démographique des populations marines : application à Dascyllus aruanus dans le lagon sud-ouest de Nouvelle-Calédonie

Understanding marine populations dynamics is critical to their effective management,and requires information on patterns of dispersal and connectivity that are still poorlyknown. Many marine organisms have a bipartite life history with a pelagic larvalstage that often represents the only opportunity for dispersal. In the last decade,new empirical and simulation approaches to measuring larval dispersal have beendeveloped, but results from these two different approaches have rarely been comparedin the context of a single marine system, impeding the use of larval dispersal modelsin metapopulation models supporting decision making. In this doctoral research, weused both approaches to investigate larval connectivity for a coral reef fish, Dascyllusaruanus, in the South-West Lagoon of New Caledonia. Our biophysical dispersalmodel shows that larval retention exhibits considerable temporal variability at bothlagoon and patch reef scales and periodically reaches large values despite low averagewater residence time. Artificial transgenerational marking of embryonic otoliths inthe wild also showed relatively low self-recruitment rates indicating high populationopenness at the reproductive season scale, with considerable monthly variability ofself-recruitment. Large quantitative discrepancies between simulations and empiricalresults emphasize the need to better understand processes that facilitate local retention,such as homing behavior and very small scale circulation patterns.Comprendre la dynamique des populations marines est essentiel à une gestion efficaceet requiert des connaissances sur la dispersion et la connectivité entre populationsqui sont encore très lacunaires. Beaucoup d’organismes marins ont un cycle de viebipartite avec une phase larvaire pélagique qui représente souvent la seule possibilitéde dispersion. De nouvelles techniques de mesure de la dispersion larvaire, parmarquage ou modélisation, ont été développées durant ces quinze dernières années.Cependant, les résultats de ces deux types d’approches ont rarement été comparésau sein d’un même système marin, limitant l’utilisation des modèles de dispersiondans les modèles de métapopulation. Dans cette thèse, nous utilisons ces deux typesd’approches pour étudier la connectivité larvaire d’un poisson de récif corallien,Dascyllus aruanus, dans le lagon sud-ouest de Nouvelle-Calédonie. Notre modèle dedispersion montre que la rétention larvaire présente une variabilité temporelle élevéeà l’échelle lagonaire et à l’échelle d’un patch de récif, et atteint périodiquement desvaleurs élevées malgré des temps moyens de résidence courts. Le marquage artificieltransgénérationnel des otolithes montre des taux d’auto-recrutement relativementbas à l’échelle de la saison reproductive, suggérant une ouverture importante despopulations, et une variabilité temporelle considérable de l’auto-recrutement. Enfin,les grandes différences entre les résultats du modèle et ceux des marquages appuientle besoin de mieux comprendre les processus qui facilitent la rétention larvaire commeles comportements de homing et la circulation des courants à très petite échelle

Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis – The saccharide moieties and their localization

To construct calcium carbonate skeletons of sophisticated architecture, scleractinian corals secrete an extracellular skeletal organic matrix (SOM) from aboral ectodermal cells. The SOM, which is composed of proteins, saccharides, and lipids, performs functions critical for skeleton formation. Even though polysaccharides constitute the major component of the SOM, its contribution to coral skeleton formation is poorly understood. To this end, we analyzed the SOM of the massive colonial coral, Porites australiensis, the skeleton of which has drawn great research interest because it records environmental conditions throughout the life of the colony. The coral skeleton was extensively cleaned, decalcified with acetic acid, and organic fractions were separated based on solubility. These fractions were analyzed using various techniques, including SDS-PAGE, FT-IR, in vitro crystallization, CHNS analysis, chromatography analysis of monosaccharide and enzyme-linked lectin assay (ELLA). We confirmed the acidic nature of SOM and the presence of sulphate, which is thought to initiate CaCO3 crystallization. In order to analyze glycan structures, we performed ELLA on the soluble SOM for the first time and found that it exhibits strong specificity to Datura stramonium lectin (DSL). Furthermore, using biotinylated DSL with anti-biotin antibody conjugated to nanogold, in situ localization of DSL-binding polysaccharides in the P. australiensis skeleton was performed. Signals were distributed on the surfaces of fiber-like crystals of the skeleton, suggesting that polysaccharides may modulate crystal shape. Our study emphasizes the importance of sugar moieties in biomineralization of scleractinian corals

Structural, mineralogical, and biochemical diversity in the lower part of the pearl layer of cultivated seawater pearls from Polynesia

A series of Polynesian pearls has been investigated with particular attention to the structural and compositional patterns of the early developmental stages of the pearl layer. These initial steps in pearl formation bear witness of the metabolic changes that have occurred during the pearl-sac formation. The resulting structurally and biochemically complex structures have been investigated using a variety of techniques that provide us with information concerning both mineral phases and the organic components. Results are discussed with respect to our understanding of the biomineralization mechanisms, as well as for the grafting process

Un Spongiaire Sphinctozoaire colonial apparenté aux constructeurs de récifs triasiques survivant dans le bathyal de Nouvelle-Calédonie

Un second représentant actuel des Sphinctozoaires, importants constructeurs de récifs au Permo-Trias, a été découvert dans la zone bathyale de la NouvelleCalédonie. Contrairement au survivant déjà connu, #Valecetia crypta$, il a conservé le mode de croissance colonial et les capacités constructrices de ses analogues fossiles. Sa croissance est bien plus lente que celle des coraux récifaux actuels. La base d'une construction de 10 cm d'épaisseur a été datée de 700 ans. (Résumé d'auteur

Simulations Numériques Directes d'une méso-chambre de combustion (Mise en oeuvre et analyses)

La méso-combustion est le régime de combustion où la taille caractéristique du domaine est juste supérieure à la distance de coincement de la flamme , typiquement de l'ordre du centimètre. La difficile réalisation de systèmes de combustion fonctionnant en ce régime de flamme particulier suscite l'intérêt : il devient alors possible de tirer parti de la haute densité énergétique des hydrocarbures pour concevoir des systèmes de production d'énergie plus compacts. Nous nous intéressons à la réalisation de calculs DNS compressibles d'une chambre de combustion cubique de 8 x 10 x 8 mm3. Ce travail présente autant la mise en œuvre des calcules, en particulier la problématique de la condition frontière mur, que les résultats obtenus. Ces derniers nous permettent d'analyser la phénoménologie complexe de cet écoulement réactif confiné et serviront de base à des modélisations futures.Meso-combustion can be defined as the combustion regime where the involved lenghts scales are close but slightly larger than the quenching distance of the flame, tipically smaller than a cm. By taking advantage of the high energetic density of liquid hydrocarbons, it would become possible to build small-sized combustion-based long-lived lighter electrical power systems. However combsution phenomena at these meso-scales have their own shortcomings. Indeed, by decreasing the system size, the usual phenomenological balance betwenne chemical reactions, mixing, turbulence and heat transfer is changed. In the present work, we focus on the DNS calculation of a cubic meso-combsution chamber of 8 x 10 x 8 mm3. This works presents the implementation of the numerical strategy used, with a specific attention to the no-slip wall compressible boundary condition. We then present an analysis of this particular reactive flow. The results are useful for future modeling of such a combustor.ROUEN-INSA Madrillet (765752301) / SudocSudocFranceF