POPULATION ECOLOGY OF THE NORTHERN SLIMY SALAMANDER (PLETHODON GLUTINOSUS) IN EAST-CENTRAL ILLINOIS

The importance of plethodontid salamanders in forested habitats has been recognized for decades and more recently plethodontids have been touted as a model taxon for monitoring ecosystem integrity and recovery. However, basic demographic data that are crucial to conservation and management plans are currently lacking for many species and regions. The objectives of our study were to characterize the population density, biomass, and capture success of a peripheral population of Plethodon glutinosus to provide a comparison for eastern populations and set a baseline for future monitoring of Midwestern populations. We estimated the population density of P. glutinosus at our site to be 0.41 salamanders/m2, with an estimated biomass of 0.70 g/m2. We did not find any evidence for temperature or precipitation affecting capture success. Our results showed that our density estimate falls within the range of other population ecology studies of Plethodon and sets a baseline for other peripheral Midwestern populations

Testing for HFE-related haemochromatosis

HFE-haemochromatosis is a genetic disorder resulting from mutations of the HFE gene. It primarily affects people of Northern European descent. Clinical manifestations result from the progressive deposition of iron into various organs including the liver. An elevated serum ferritin concentration greater than 300 microgram/L and a transferrin saturation of greater than 45% will identify almost all patients with HFE-haemochromatosis. HFE genotyping confirms the diagnosis. In some patients, liver biopsy may still be necessary as the degree of hepatic fibrosis has prognostic implications

Systematic review and meta-analysis of serotonin transporter genotype and discontinuation from antidepressant treatment

AbstractThere is evidence that 5-HTTLPR is associated with response following treatment from selective serotonin reuptake inhibitors (SSRIs). The short (S) allele has reduced serotonin transporter expression, compared to the long (L) allele, and has been reported to be associated with poorer response in Europeans, with the effect in other populations unclear. However the published literature is inconsistent. A systematic review and meta-analysis was performed to investigate the effect of 5-HTTLPR on discontinuation from antidepressant treatment. Data were obtained from 17 studies including 4309 participants. The principal outcome measure was the allelic odds ratio (OR) for the 5-HTTLPR S allele and discontinuation status. A random effects meta-analysis provided no evidence that the S allele was associated with increased odds of discontinuation from SSRIs in Europeans (OR 1.09, 95% CI 0.83–1.42, p=0.53; 10 studies, n=2504) but in East Asians there was evidence of a reduced odds of discontinuation (OR 0.28, 95% CI 0.12–0.64, p=0.002; 2 studies, n=136). There was a suggestion of small study bias (p=0.05). This meta-analysis provides no evidence of an association between 5-HTTLPR and discontinuation from antidepressant treatment in Europeans. The low number of studies in East Asian samples using SSRIs reduces confidence in our evidence that the S allele decreases the odds of discontinuation in this population. At present, there is no evidence of an association between 5-HTTLPR and discontinuation from SSRI treatment in a European population with further studies required to investigate its effects in different populations

Recent and Rapid Radiation of the Highly Endangered Harlequin Frogs (Atelopus) into Central America Inferred from Mitochondrial DNA Sequences

Populations of amphibians are experiencing severe declines worldwide. One group with the most catastrophic declines is the Neotropical genus Atelopus (Anura: Bufonidae). Many species of Atelopus have not been seen for decades and all eight Central American species are considered “Critically Endangered”, three of them very likely extinct. Nonetheless, the taxonomy, phylogeny, and biogeographic history of Central American Atelopus are still poorly known. In this study, the phylogenetic relationships among seven of the eight described species in Central America were inferred based on mitochondrial DNA sequences from 103 individuals, including decades-old museum samples and two likely extinct species, plus ten South American species. Among Central American samples, we discovered two candidate species that should be incorporated into conservation programs. Phylogenetic inference revealed a ladderized topology, placing species geographically furthest from South America more nested in the tree. Model-based ancestral area estimation supported either one or two colonization events from South America. Relaxed-clock analysis of divergence times indicated that Atelopus colonized Central America prior to 4 million years ago (Ma), supporting a slightly older than traditional date for the closure of the Isthmus. This study highlights the invaluable role of museum collections in documenting past biodiversity, and these results could guide future conservation efforts

Reducing in-stent restenosis therapeutic manipulation of miRNA in vascular remodeling and inflammation

Background: Drug-eluting stents reduce the incidence of in-stent restenosis, but they result in delayed arterial healing and are associated with a chronic inflammatory response and hypersensitivity reactions. Identifying novel interventions to enhance wound healing and reduce the inflammatory response may improve long-term clinical outcomes. Micro–ribonucleic acids (miRNAs) are noncoding small ribonucleic acids that play a prominent role in the initiation and resolution of inflammation after vascular injury.<p></p> Objectives: This study sought to identify miRNA regulation and function after implantation of bare-metal and drug-eluting stents.<p></p> Methods: Pig, mouse, and in vitro models were used to investigate the role of miRNA in in-stent restenosis.<p></p> Results: We documented a subset of inflammatory miRNAs activated after stenting in pigs, including the miR-21 stem loop miRNAs. Genetic ablation of the miR-21 stem loop attenuated neointimal formation in mice post-stenting. This occurred via enhanced levels of anti-inflammatory M2 macrophages coupled with an impaired sensitivity of smooth muscle cells to respond to vascular activation.<p></p> Conclusions: MiR-21 plays a prominent role in promoting vascular inflammation and remodeling after stent injury. MiRNA-mediated modulation of the inflammatory response post-stenting may have therapeutic potential to accelerate wound healing and enhance the clinical efficacy of stenting

How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world\u27s largest rodent

Gigantism results when one lineage within a clade evolves extremely large body size relative to its small-bodied ancestors, a common phenomenon in animals. Theory predicts that the evolution of giants should be constrained by two tradeoffs. First, because body size is negatively correlated with population size, purifying selection is expected to be less efficient in species of large body size, leading to increased mutational load. Second, gigantism is achieved through generating a higher number of cells along with higher rates of cell proliferation, thus increasing the likelihood of cancer. To explore the genetic basis of gigantism in rodents and uncover genomic signatures of gigantism-related tradeoffs, we assembled a draft genome of the capybara (Hydrochoerus hydrochaeris), the world\u27s largest living rodent. We found that the genome-wide ratio of non-synonymous to synonymous mutations (omega) is elevated in the capybara relative to other rodents, likely caused by a generation-time effect and consistent with a nearly-neutral model of molecular evolution. A genome-wide scan for adaptive protein evolution in the capybara highlighted several genes controlling post-natal bone growth regulation and musculoskeletal development, which are relevant to anatomical and developmental modifications for an increase in overall body size. Capybara-specific gene-family expansions included a putative novel anticancer adaptation that involves T cell-mediated tumor suppression, offering a potential resolution to the increased cancer risk in this lineage. Our comparative genomic results uncovered the signature of an intragenomic conflict where the evolution of gigantism in the capybara involved selection on genes and pathways that are directly linked to cancer

Quality Assurance Project Plan (QAPP) for Wetland Program Development Grant No. CD-00E00963-0

In order to evaluate overall ecological health and function of seasonal and semi-permanent wetlands in Illinois, we will sample 240 wetlands distributed across 60 state managed lands over three field seasons (2012-2014; see attached map for preliminary site locations). During each field season, we will conduct sampling on 20 state managed properties and 4 wetlands will be sampled at each site (n = 80 wetlands per season). At each wetland surveys will be conducted during four time periods over a five month span (February-June) to increase the probability of species detection. Additionally, due to fluctuations in population sizes, variability in breeding phenologies, and suspected detection rates between taxonomic groups (i.e. rare species have lower detection rates than common species), wetlands will be sampled for three nights per period (n =12 total samples in a season). By repeatedly sampling wetlands during the field season, we can estimate occupancy and detection rates using program PRESENCE 3.1. Each state managed property (and associated wetlands) will be sampled during only one field season to increase the number of overall sites sampled during the study and all wetlands will be located on Illinois Department of Natural Resources (IDNR) managed properties to ensure accessibility. Wetland health and function will be assessed by examining three critical components of wetlands ecosystems: 1) Amphibian diversity and abundance; 2) Reptile diversity and abundance; and 3) Macroinvertebrate diversity and abundance. Each of these primary components will Date: 04 January 2012 Revision 0 9 be incorporated into an index of biological integrity (IBI) to determine how well the wetland is functioning within the ecosystem.U.S. Environmental Protection Agency Wetland Program Development Grant No. CD-00E00963-0unpublishednot peer reviewedOpe