Mutagens in contaminated soil: a review

The intentional and accidental discharges of toxic pollutants into the lithosphere results in soil contamination. In some cases (e.g., wood preserving wastes, coal-tar, airborne combustion by-products), the contaminated soil constitutes a genotoxic hazard. This work is a comprehensive review of published information on soil mutagenicity. In total, 1312 assessments of genotoxic activity from 118 works were examined. The majority of the assessments (37.6%) employed the Salmonella mutagenicity test with strains TA98 and/or TA100. An additional 37.6% of the assessments employed a variety of plant species (e.g., Tradescantia clone 4430, Vicia faba, Zea mays, Allium cepa) to assess mutagenic activity. The compiled data on Salmonella mutagenicity indicates significant differences (p \u3c 0.0001) in mean potency (revertents per gram dry weight) between industrial, urban, and rural/agricultural sites. Additional analyses showed significant empirical relationships between S9-activated TA98 mutagenicity and soil polycyclic aromatic hydrocarbon (PAH) concentration (r2 = 0.19 to 0.25, p \u3c 0.0001), and between direct-acting TA98 mutagenicity and soil dinitropyrene (DNP) concentration (r2 = 0.87, p \u3c 0.0001). The plant assay data revealed excellent response ranges and significant differences between heavily contaminated, industrial, rural/agricultural, and reference sites, for the anaphase aberration in Allium cepa (direct soil contact) and the waxy locus mutation assay in Zea mays (direct soil contact). The Tradescantia assays appeared to be less responsive, particularly for exposures to aqueous soil leachates. Additional data analyses showed empirical relationships between anaphase aberrations in Allium, or mutations in Arabidopsis, and the 137Cs contamination of soils. Induction of micronuclei in Tradescantia is significantly related to the soil concentration of several metals (e.g., Sb, Cu, Cr, As, Pb, Cd, Ni, Zn). Review of published remediation exercises showed effective removal of genotoxic petrochemical wastes within one year. Remediation of more refractory genotoxic material (e.g., explosives, creosote) frequently showed increases in mutagenic hazard that remained for extended periods. Despite substantial contamination and mutagenic hazards, the risk of adverse effect (e.g., mutation, cancer) in humans or terrestrial biota is difficult to quantify

The economic geology of the Okiep copper deposits, Namaqualand, South Africa

The Okiep Copper District situated in the north-western Cape Province, covers some 3 000 km and is the oldest mining area in the Republic of South Africa. The O'okiep Copper Company Limited commenced production in 1940 with a proven ore reserve of 9 million tons at 2,45 % cu. Production since 1940 and present ore reserves total some 93 million tonnes at 1,08 % Cu. The rocks comprising the Okiep Copper District are of Proterozoic age and have been subdivided into a meta-volcanosedimentary succession, intruded by various sub-horizontally emplaced granitoid intrusions. The various intrusions occurred at different stages relative to the main structural and metamorphic events. The copper deposits are confined to basic rocks which are the youngest major group of intrusives in the District. They occur as swarms of generally easterly-trending, steep northdipping, irregular dyke-like bodies consisting of diorite, anorthosite and norite. The dominant silicate constituents are andesite ranging to labradorite, hypersthene, biotite and phlogopite. Copper sulphides are preferentially associated with the more basic varieties. The copper sulphides are mainly chalcopyrite, bornite and subsidiary chalcocite. The copper content of the basic rocks is erratic ranging over small distances from a mere trace to several percent. Emplacement of the cupriferous basic rocks is predisposed to a large extent by enigmatic structural features locally referred to as steep structures. The most common manifestation of steep structure deformation is typically a narrow antiformal linear feature along which continuity of the country rocks has been interrupted by piercement folding and shearing. In places, pipelike bodies of megabreccia occur along steep structures, and also act as hosts to the basic rock. Areas of steep structure are thus prime exploration targets, due to their close spatial association with the cupriferous basic rocks. Exploration techiques employed in the Okiep Copper District in~ elude regional and detailed geological mapping, geophysical surveys utilizing magnetic, gravimetric and electrical methods, as well as limited application of soil and stream-sediment geochemistry. Final evaluation is by surface and underground diamond drilling. Exploration has to date discovered 18 new mines with individual ore reserves ranging from 200 000 to 37 000 000 tonnes. All are underground operations, and the sub-level open stoping method of mining is standard

Chemical genetic identification of CDKL5 substrates reveals its role in neuronal microtubule dynamics.

Loss-of-function mutations in CDKL5 kinase cause severe neurodevelopmental delay and early-onset seizures. Identification of CDKL5 substrates is key to understanding its function. Using chemical genetics, we found that CDKL5 phosphorylates three microtubule-associated proteins: MAP1S, EB2 and ARHGEF2, and determined the phosphorylation sites. Substrate phosphorylations are greatly reduced in CDKL5 knockout mice, verifying these as physiological substrates. In CDKL5 knockout mouse neurons, dendritic microtubules have longer EB3-labelled plus-end growth duration and these altered dynamics are rescued by reduction of MAP1S levels through shRNA expression, indicating that CDKL5 regulates microtubule dynamics via phosphorylation of MAP1S. We show that phosphorylation by CDKL5 is required for MAP1S dissociation from microtubules. Additionally, anterograde cargo trafficking is compromised in CDKL5 knockout mouse dendrites. Finally, EB2 phosphorylation is reduced in patient-derived human neurons. Our results reveal a novel activity-dependent molecular pathway in dendritic microtubule regulation and suggest a pathological mechanism which may contribute to CDKL5 deficiency disorder

When and Why Did Human Brains Decrease in Size? A New Change-Point Analysis and Insights From Brain Evolution in Ants

Human brain size nearly quadrupled in the six million years since Homo last shared a common ancestor with chimpanzees, but human brains are thought to have decreased in volume since the end of the last Ice Age. The timing and reason for this decrease is enigmatic. Here we use change-point analysis to estimate the timing of changes in the rate of hominin brain evolution. We find that hominin brains experienced positive rate changes at 2.1 and 1.5 million years ago, coincident with the early evolution of Homo and technological innovations evident in the archeological record. But we also find that human brain size reduction was surprisingly recent, occurring in the last 3,000 years. Our dating does not support hypotheses concerning brain size reduction as a by-product of body size reduction, a result of a shift to an agricultural diet, or a consequence of self-domestication. We suggest our analysis supports the hypothesis that the recent decrease in brain size may instead result from the externalization of knowledge and advantages of group-level decision-making due in part to the advent of social systems of distributed cognition and the storage and sharing of information. Humans live in social groups in which multiple brains contribute to the emergence of collective intelligence. Although difficult to study in the deep history of Homo, the impacts of group size, social organization, collective intelligence and other potential selective forces on brain evolution can be elucidated using ants as models. The remarkable ecological diversity of ants and their species richness encompasses forms convergent in aspects of human sociality, including large group size, agrarian life histories, division of labor, and collective cognition. Ants provide a wide range of social systems to generate and test hypotheses concerning brain size enlargement or reduction and aid in interpreting patterns of brain evolution identified in humans. Although humans and ants represent very different routes in social and cognitive evolution, the insights ants offer can broadly inform us of the selective forces that influence brain size

Calculating partial expected value of perfect information via Monte Carlo sampling algorithms

Partial expected value of perfect information (EVPI) calculations can quantify the value of learning about particular subsets of uncertain parameters in decision models. Published case studies have used different computational approaches. This article examines the computation of partial EVPI estimates via Monte Carlo sampling algorithms. The mathematical definition shows 2 nested expectations, which must be evaluated separately because of the need to compute a maximum between them. A generalized Monte Carlo sampling algorithm uses nested simulation with an outer loop to sample parameters of interest and, conditional upon these, an inner loop to sample remaining uncertain parameters. Alternative computation methods and shortcut algorithms are discussed and mathematical conditions for their use considered. Maxima of Monte Carlo estimates of expectations are biased upward, and the authors show that the use of small samples results in biased EVPI estimates. Three case studies illustrate 1) the bias due to maximization and also the inaccuracy of shortcut algorithms 2) when correlated variables are present and 3) when there is nonlinearity in net benefit functions. If relatively small correlation or nonlinearity is present, then the shortcut algorithm can be substantially inaccurate. Empirical investigation of the numbers of Monte Carlo samples suggests that fewer samples on the outer level and more on the inner level could be efficient and that relatively small numbers of samples can sometimes be used. Several remaining areas for methodological development are set out. A wider application of partial EVPI is recommended both for greater understanding of decision uncertainty and for analyzing research priorities

Menopausal/Post-Menopausal Women and Maternal Career Disruption

This chapter seeks to consider the possibility of a blindness to considering the impact of mothering and post mothering (menopause) upon the workforce in terms of career development models. There has been a continuing ‘onward and upward’ tournament (Malhotra et al., 2010) in the UK which suggests workers should continue strive to change jobs to seek higher pay and status moving around the country throughout their worklife with little regards for their familial responsibilities. Despite a discourse which suggests the economic position of women has been heralded as positively changed as there is no longer a ‘glass ceiling’ for female employees who are willing to put work before their employment (Whiteside and Harding, 2013), this provides a hollow victory. It fails to recognise that within the labour market, there will be parental years. Legislation in the UK and even Europe largely deals with ‘baby years’ but despite the inclusion of some ‘family friendly work-life balance’ initiatives, the experience for many parents is that the workplace represents a cause for work family conflict. In part this is because mothering is still stereotypically seen as a women’s role and increasing legislation provides an illusion of resolving discrimination (TUC, 2014). As such there is little consideration for the development of mothers during their ‘career‘ lifetime

Integration of professional judgement and decision-making in high-level adventure sports coaching practice

This study examined the integration of professional judgement and decision-making processes in adventure sports coaching. The study utilised a thematic analysis approach to investigate the decision-making practices of a sample of high-level adventure sports coaches over a series of sessions. Results revealed that, in order to make judgements and decisions in practice, expert coaches employ a range of practical and pedagogic management strategies to create and opportunistically use time for decision-making. These approaches include span of control and time management strategies to facilitate the decision-making process regarding risk management, venue selection, aims, objectives, session content, and differentiation of the coaching process. The implication for coaches, coach education, and accreditation is the recognition and training of the approaches that“create time” for the judgements in practice, namely“creating space to think”. The paper concludes by offering a template for a more expertise-focused progression in adventure sports coachin