Effect of rate of application on degradation of imazethapyr in groundnut and soil under tropical Indian condition

Pesticides though formulated to be biologically degradable, few herbicides reported to cause surface and groundwater contamination which needs the monitoring of herbicide residues in environment continuously. Thus, to monitor the persistence and residues in crops, imazethapyr degradation studies were conducted in soil with groundnut cropping under Indian tropical condition. A groundnut field was treated with different doses of imazethapyr as early post emergence. Results showed that the degradation of imazethapyr in soil and groundnut plant followed first order reaction kinetics irrespective of the dose. The residue of imazethapyr persists in soil up to 60 days at higher rates of application while it persists up to 30 days in plant with the calculated half life of 2.8 to 7.4 days in soil and 5.1 to 5.9 days in plant. At the time of harvest, the residue of imazethapyr in soil, groundnut haulm or pods were below the detectable limit of 0.008 mg/kg across different doses of application. However, the continuous and inappropriate use in light textured soils may cause groundwater contamination and bioaccumulation in plant system. Hence, a pre harvest interval of 75 days must be allowed after the application of imazethapyr for the weed control in groundnut

Field dissipation of pendimethalin and alachlor in sandy clay loam soil and its terminal residues in sunflower (Helianthus annus L.)

Field experiments were conducted with sunflower as a test crop during 2010-11 to study the dissipation kinetics and the persistence of pendimethalin and alachlor in sandy clay loam soil and its terminal residues in sunflower. Herbicides were applied at recommended and double the recommended dose along with control and the treatments were replicated thrice in randomized block design. The soil and plant samples collected at periodical intervals for herbicides residue determination using GC equipped with ECD detector. Results shows that the degradation of both the herbicides in soil was faster at higher dose of application than at the lower dose and the concentration decreased with the advancement in crop growth. While pendimethalin persisted in soil for 60 – 90 days, the alachlor persisted in soil for 30 - 45 days depending on the quantity of application. Degradation of both the herbicides in soil followed first order kinetics with the mean half life of 14.6 and 9.8 days respectively for pendimethalin and alachlor. Residues of these herbicides were below 0.001 mg/kg at the time of harvest in soil, sunflower seeds and stalks showed that these herbicides a can be safely used for the control of weeds in sunflower cultivation

Isolation and functional characterization of Lycopene β-cyclase (CYC-B) promoter from Solanum habrochaites

<p>Abstract</p> <p>Background</p> <p>Carotenoids are a group of C40 isoprenoid molecules that play diverse biological and ecological roles in plants. Tomato is an important vegetable in human diet and provides the vitamin A precursor <it>β</it>-carotene. Genes encoding enzymes involved in carotenoid biosynthetic pathway have been cloned. However, regulation of genes involved in carotenoid biosynthetic pathway and accumulation of specific carotenoid in chromoplasts are not well understood. One of the approaches to understand regulation of carotenoid metabolism is to characterize the promoters of genes encoding proteins involved in carotenoid metabolism. <it>Lycopene β-cyclase </it>is one of the crucial enzymes in carotenoid biosynthesis pathway in plants. Its activity is required for synthesis of both α-and β-carotenes that are further converted into other carotenoids such as lutein, zeaxanthin, etc. This study describes the isolation and characterization of chromoplast-specific <it>Lycopene β-cyclase </it>(<it>CYC-B</it>) promoter from a green fruited <it>S. habrochaites </it>genotype EC520061.</p> <p>Results</p> <p>A 908 bp region upstream to the initiation codon of the <it>Lycopene β-cyclase </it>gene was cloned and identified as full-length promoter. To identify promoter region necessary for regulating developmental expression of the <it>ShCYC-B </it>gene, the full-length promoter and its three different 5' truncated fragments were cloned upstream to the initiation codon of <it>GUS </it>reporter cDNA in binary vectors. These four plant transformation vectors were separately transformed in to <it>Agrobacterium</it>. <it>Agrobacterium</it>-mediated transient and stable expression systems were used to study the <it>GUS </it>expression driven by the full-length promoter and its 5' deletion fragments in tomato. The full-length promoter showed a basal level activity in leaves, and its expression was upregulated > 5-fold in flowers and fruits in transgenic tomato plants. Deletion of -908 to -577 bp 5' to ATG decreases the <it>ShCYC-B </it>promoter strength, while deletion of -908 to -437 bp 5' to ATG led to significant increase in the activity of GUS in the transgenic plants. Promoter deletion analysis led to the identification of a short promoter region (-436 bp to ATG) that exhibited a higher promoter strength but similar developmental expression pattern as compared with the full-length <it>ShCYC-B </it>promoter.</p> <p>Conclusion</p> <p>Functional characterization of the full-length <it>ShCYC-B </it>promoter and its deletion fragments in transient expression system <it>in fruto </it>as well as in stable transgenic tomato revealed that the promoter is developmentally regulated and its expression is upregulated in chromoplast-rich flowers and fruits. Our study identified a short promoter region with functional activity and developmental expression pattern similar to that of the full-length <it>ShCYC-B </it>promoter. This 436 bp promoter region can be used in promoter::reporter fusion molecular genetic screens to identify mutants impaired in <it>CYC-B </it>expression, and thus can be a valuable tool in understanding carotenoid metabolism in tomato. Moreover, this short promoter region of <it>ShCYC-B </it>may be useful in genetic engineering of carotenoid content and other agronomic traits in tomato fruits.</p

Efficacy of new herbicide (bispyribac sodium 10% SC) against different weed flora, nutrient uptake in rice and their residual effects on succeeding crop of green gram under zero tillage

Field experiment was conducted in the wetland farms of Tamil Nadu Agricultural University, Coimbatore during rabi season (August to February) of 2011-12 to evaluate the herbicide (Bispyribac sodium 10% SC) on weed control and their nutrient management in direct seeded lowland rice. The experiment was laid out in a Randomized Block Design (RBD) with three replications. The results revealed that Early Post Emergence (EPOE) application of bispyribac sodium 10% SC 40 g ha-1 recorded higher weed control efficiency and lesser weed density, nutrient uptake at reproductive stage of the crop. Different weed management practices imposed on rice crop did not affect the germination of succeeding green gram

HHP1, a novel signalling component in the cross-talk between the cold and osmotic signalling pathways in Arabidopsis

Heptahelical protein 1 (HHP1) is a negative regulator in abscisic acid (ABA) and osmotic signalling in Arabidopsis. The physiological role of HHP1 was further investigated in this study using transgenic and knock-out plants. In HHP1::GUS transgenic mutants, GUS activity was found to be mainly expressed in the roots, vasculature, stomata, hydathodes, adhesion zones, and connection sites between septa and seeds, regions in which the regulation of turgor pressure is crucial. By measuring transpiration rate and stomatal closure, it was shown that the guard cells in the hhp1-1 mutant had a decreased sensitivity to drought and ABA stress compared with the WT or the c-hhp1-1 mutant, a complementation mutant of HHP1 expressing the HHP1 gene. The N-terminal fragment (amino acids 1–96) of HHP1 was found to interact with the transcription factor inducer of CBF expression-1 (ICE1) in yeast two-hybrid and bimolecular fluorescence complementation (BiFC) studies. The hhp1-1 mutant grown in soil showed hypersensitivity to cold stress with limited watering. The expression of two ICE1-regulated genes (CBF3 and MYB15) and several other cold stress-responsive genes (RD29A, KIN1, COR15A, and COR47) was less sensitive to cold stress in the hhp1-1 mutant than in the WT. These data suggest that HHP1 may function in the cross-talk between cold and osmotic signalling

Trichostatin A Selectively Suppresses the Cold-Induced Transcription of the ZmDREB1 Gene in Maize

Post-translational modifications of histone proteins play a crucial role in responding to environmental stresses. Histone deacetylases (HDACs) catalyze the removal of an acetyl group from histones and are generally believed to be a transcriptional repressor. In this paper, we report that cold treatment highly induces the up-regulation of HDACs, leading to global deacetylation of histones H3 and H4. Treatment of maize with the HDAC inhibitor trichostatin A (TSA) under cold stress conditions strongly inhibits induction of the maize cold-responsive genes ZmDREB1 and ZmCOR413. However, up-regulation of the ZmICE1 gene in response to cold stress is less affected. The expression of drought and salt induced genes, ZmDBF1 and rab17, is almost unaffected by TSA treatment. Thus, these observations show that HDACs may selectively activate transcription. The time course of TSA effects on the expression of ZmDREB1 and ZmCOR413 genes indicates that HDACs appear to directly activate the ZmDREB1 gene, which in turn modulates ZmCOR413 expression. After cold treatment, histone hyperacetylation and DNA demethylation occurs in the ICE1 binding region, accompanied by an increase in accessibility to micrococcal nuclease (MNase). The two regions adjacent to the ICE1 binding site remain hypoacetylated and methylated. However, during cold acclimation, TSA treatment increases the acetylation status and accessibility of MNase and decreases DNA methylation at these two regions. However, TSA treatment does not affect histone hyperacetylation and DNA methylation levels at the ICE1 binding regions of the ZmDREB1 gene. Altogether, our findings indicate that HDACs positively regulate the expression of the cold-induced ZmDREB1 gene through histone modification and chromatin conformational changes and that this activation is both gene and site selective

A genome for gnetophytes and early evolution of seed plants

Genome sequencing, assembly and annotation were conducted by the Novogene Bioinformatics Institute, Beijing, China; mutual contracts were No. NHT140016 and NVT140016004. This work was supported by funding from the Scientific Project of Shenzhen Urban Administration (201519) and a Major Technical Research Project of the Innovation of Science and Technology Commission of Shenzhen (JSGG20140515164852417). Additional funding was provided in particular by the Scientific Research Program of Sino-Africa Joint Research Center (SAJL201607). We thank X.Q. Wang, G.W. Hu, Z.D. Chen and Y.H. Guo for comments on gnetophyte phylogenetic relationships and ecological issues; H. Wu and X.P. Ning for discussion of related organ development; K.K. Wan and S. Sun for additional help on the analysis of repeats. We also thank X.Y. for support of funding coordination. Y.V.d.P. acknowledges the Multidisciplinary Research Partnership ‘Bioinformatics: from nucleotides to networks’ Project (no. 01MR0310W) of Ghent University, and funding from the European Union Seventh Framework Programme (FP7/2007-2013) under European Research Council Advanced Grant Agreement 322739-DOUBLEUP

Natural Variation in Arabidopsis thaliana Revealed a Genetic Network Controlling Germination Under Salt Stress

Plant responses to environmental stresses are polygenic and complex traits. In this study quantitative genetics using natural variation in Arabidopsis thaliana was used to investigate the genetic architecture of plant responses to salt stress. Eighty seven A. thaliana accessions were screened and showed a large variation for root development and seed germination under 125 and 200 mM NaCl, respectively. Twenty two quantitative trait loci for these traits have been detected by phenotyping two recombinants inbred line populations, Sha x Col and Sha x Ler. Four QTLs controlling germination under salt were detected in the Sha x Col population. Interestingly, only one allelic combination at these four QTLs inhibits germination under salt stress, implying strong epistatic interactions between them. In this interacting context, we confirmed the effect of one QTL by phenotyping selected heterozygous inbred families. We also showed that this QTL is involved in the control of germination under other stress conditions such as KCl, mannitol, cold, glucose and ABA. Our data highlights the presence of a genetic network which consists of four interacting QTLs and controls germination under limiting environmental conditions

Comparative expression of Cbf genes in the Triticeae under different acclimation induction temperatures

In plants, the C-repeat binding factors (Cbfs) are believed to regulate low-temperature (LT) tolerance. However, most functional studies of Cbfs have focused on characterizing expression after an LT shock and have not quantified differences associated with variable temperature induction or the rate of response to LT treatment. In the Triticeae, rye (Secale cereale L.) is one of the most LT-tolerant species, and is an excellent model to study and compare Cbf LT induction and expression profiles. Here, we report the isolation of rye Cbf genes (ScCbfs) and compare their expression levels in spring- and winter-habit rye cultivars and their orthologs in two winter-habit wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) cultivars. Eleven ScCbfs were isolated spanning all four major phylogenetic groups. Nine of the ScCbfs mapped to 5RL and one to chromosome 2R. Cbf expression levels were variable, with stronger expression in winter- versus spring-habit rye cultivars but no clear relationship with cultivar differences in LT, down-stream cold-regulated gene expression and Cbf expression were detected. Some Cbfs were expressed only at warmer acclimation temperatures in all three species and their expression was repressed at the end of an 8-h dark period at warmer temperatures, which may reflect a temperature-dependent, light-regulated diurnal response. Our work indicates that Cbf expression is regulated by complex genotype by time by induction–temperature interactions, emphasizing that sample timing, induction–temperature and light-related factors must receive greater consideration in future studies involving functional characterization of LT-induced genes in cereals