Accurate Biomolecular Structures by the Nano-LEGO Approach: Pick the Bricks and Build Your Geometry

The determination of accurate equilibrium molecular structures plays a fundamental role for understanding many physical-chemical properties of molecules, ranging from the precise evaluation of the electronic structure to the analysis of the role played by dynamical and environmental effects in tuning their overall behavior. For small semi-rigid systems in the gas phase, state-of-the-art quantum chemical computations rival the most sophisticated experimental (from, for example, high-resolution spectroscopy) results. For larger molecules, more effective computational approaches must be devised. To this end, we have further enlarged the compilation of available semi-experimental (SE) equilibrium structures, now covering the most important fragments containing H, B, C, N, O, F, P, S, and Cl atoms collected in the new SE100 database. Next, comparison with geometries optimized by methods rooted in the density functional theory showed that the already remarkable results delivered by PW6B95 and, especially, rev-DSDPBEP86 functionals can be further improved by a linear regression (LR) approach. Use of template fragments (taken from the SE100 library) together with LR estimates for the missing interfragment parameters paves the route toward accurate structures of large molecules, as witnessed by the very small deviations between computed and experimental rotational constants. The whole approach has been implemented in a user-friendly tool, termed nano-LEGO, and applied to a number of demanding case studies

DFT meets the segmented polarization consistent basis sets: Performances in the computation of molecular structures, rotational and vibrational spectroscopic properties

Quantum-chemical calculations assist the analysis of laboratory spectra, and often provide the only means to determine spectroscopic data that cannot be accessed experimentally. For the purpose, reliable predictions of structural and spectroscopic parameters are required. Although coupled cluster theory in conjunction with to large basis sets and composite schemes can reach impressive accuracies for structural, thermochemical and spectroscopic properties, it is still limited to small sized molecules. DFT represents the working option for medium to large molecular systems. In this context, systematic investigations are required aimed at characterizing the performances of the different DFT model chemistries. In this work, the accuracy of the popular hybrid B3LYP and the double hybrid B2PLYP functionals coupled to the segmented polarization consistent (aug-)pcs-n basis sets in the prediction of molecular structures and rotational- and vibrational spectroscopic parameters are investigated using a benchmark set of molecules of both atmospheric and astrochemical relevance. For comparison purposes, different flavors of Dunning's triple-\u3b6 basis sets and the SNSD basis set, are also employed. The convergence behavior of the pcs-n hierarchy with n = 1\u20134 is also addressed to some extent. The results indicate the B3LYP-D3 functional in conjunction with the aug-pcs-1 or SNSD basis sets as a cost-effective model chemistry for applications in the field of rotational and vibrational spectroscopies. Improved accuracy is obtained by coupling the B2PLYP-D3 functional with the aug-pcs-2 or aug-cc-pVTZ triple-\u3b6 basis sets that show an accuracy around 0.003 \uc5 and 0.3\ub0 for bond lengths and angles, 1% and 3% for rotational and quartic centrifugal distortion constants, respectively, 12 cm 121 for fundamental frequencies and 3 km mol 121 for IR intensities. The B2PLYP-D3/maug-cc-pVTZ-dH level keeps the same accuracy, with slightly larger deviations for intensities

Accuracy meets interpretability for computational spectroscopy by means of hybrid and double-hybrid functionals

Accuracy and interpretability are often seen as the devil and holy grail in computational spectroscopy and their reconciliation remains a primary research goal. In the last few decades, density functional theory has revolutionized the situation, paving the way to reliable yet effective models for medium size molecules, which could also be profitably used by non-specialists. In this contribution we will compare the results of some widely used hybrid and double hybrid functionals with the aim of defining the most suitable recipe for all the spectroscopic parameters of interest in rotational and vibrational spectroscopy, going beyond the rigid rotor/harmonic oscillator model. We will show that last-generation hybrid and double hybrid functionals in conjunction with partially augmented double-and triple-zeta basis sets can offer, in the framework of second order vibrational perturbation theory, a general, robust, and user-friendly tool with unprecedented accuracy for medium-size semi-rigid molecules

The Spectroscopic Characterization of Halogenated Pollutants through the Interplay between Theory and Experiment: Application to R1122

In the last decade, halogenated ethenes have seen an increasing interest for different applications; in particular, in refrigeration, air-conditioning and heat pumping. At the same time, their adverse effects as atmospheric pollutants require environmental monitoring, especially by remote sensing spectroscopic techniques. For this purpose, an accurate characterization of the spectroscopic fingerprint—in particular, those of relevance for rotational–vibrational spectroscopy—of the target molecules is strongly needed. This work provides an integrated computational–theoretical investigation on R1122 (2-Chloro-1,1-difluoro-ethylene, ClHC=CF2), a compound widely employed as a key intermediate in different chemical processes. State-of-the-art quantum chemical calculations relying on CCSD(T)-based composite schemes and hybrid CCSD(T)/DFT approaches are used to obtain an accurate prediction of the structural, rotational and vibrational spectroscopic properties. In addition, the equilibrium geometry is obtained by exploiting the semi-experimental method. The theoretical predictions are used to guide the analysis of the experimentally recorded gas-phase infrared spectrum, which is assigned in the 400–6500 cm−1 region. Furthermore, absorption cross sections are accurately determined over the same spectral range. Finally, by using the obtained spectroscopic data, a first estimate of the global warming potential of R1122 vibrational spectra is obtained