Model-assisted measurements of suspension-feeding flow velocities

Author Posting. © Company of Biologists, 2017. This article is posted here by permission of Company of Biologists for personal use, not for redistribution. The definitive version was published in Journal of Experimental Biology 220 (2017): 2096-2107, doi:10.1242/jeb.147934.Benthic marine suspension feeders provide an important link between benthic and pelagic ecosystems. The strength of this link is determined by suspension-feeding rates. Many studies have measured suspension-feeding rates using indirect clearance-rate methods, which are based on the depletion of suspended particles. Direct methods that measure the flow of water itself are less common, but they can be more broadly applied because, unlike indirect methods, direct methods are not affected by properties of the cleared particles. We present pumping rates for three species of suspension feeders, the clams Mya arenaria and Mercenaria mercenaria and the tunicate Ciona intestinalis, measured using a direct method based on particle image velocimetry (PIV). Past uses of PIV in suspension-feeding studies have been limited by strong laser reflections that interfere with velocity measurements proximate to the siphon. We used a new approach based on fitting PIV-based velocity profile measurements to theoretical profiles from computational fluid dynamic (CFD) models, which allowed us to calculate inhalant siphon Reynolds numbers (Re). We used these inhalant Re and measurements of siphon diameters to calculate exhalant Re, pumping rates, and mean inlet and outlet velocities. For the three species studied, inhalant Re ranged from 8 to 520, and exhalant Re ranged from 15 to 1073. Volumetric pumping rates ranged from 1.7 to 7.4 l h−1 for M. arenaria, 0.3 to 3.6 l h−1 for M. mercenaria and 0.07 to 0.97 l h−1 for C. intestinalis. We also used CFD models based on measured pumping rates to calculate capture regions, which reveal the spatial extent of pumped water. Combining PIV data with CFD models may be a valuable approach for future suspension-feeding studies.This research is part of a collaborative project (National Science Foundation grant OCE-1260232 to P.A.J., and grant OCE-1260199 to J. Crimaldi, University of Colorado). Funding was also provided by NSF grant OIA-1355457 to Maine EPSCoR at the University of Maine (D.C.B.).2018-05-3

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Model-assisted measurements of suspension-feeding flow velocities

Benthic marine suspension feeders provide an important link between benthic and pelagic ecosystems. The strength of this link is determined by suspension-feeding rates. Many studies have measured suspension-feeding rates using indirect clearance-rate methods, which are based on the depletion of suspended particles. Direct methods that measure the flow of water itself are less common, but they can be more broadly applied because, unlike indirect methods, direct methods are not affected by properties of the cleared particles. We present pumping rates for three species of suspension feeders, the clams Mya arenaria and Mercenaria mercenaria and the tunicate Ciona intestinalis, measured using a direct method based on particle image velocimetry (PIV). Past uses of PIV in suspension-feeding studies have been limited by strong laser reflections that interfere with velocity measurements proximate to the siphon. We used a new approach based on fitting PIV-based velocity profile measurements to theoretical profiles from computational fluid dynamic (CFD) models, which allowed us to calculate inhalant siphon Reynolds numbers (Re). We used these inhalant Re and measurements of siphon diameters to calculate exhalant Re, pumping rates, and mean inlet and outlet velocities. For the three species studied, inhalant Re ranged from 8−520, and exhalant Re ranged from 15−1073. Volumetric pumping rates ranged from 1.7−7.4 l h−1 for Mya, 0.3−3.6 l h−1 for Mercenaria, and 0.07−0.97 l h−1 for Ciona. We also used CFD models based on measured pumping rates to calculate capture regions, which reveal the spatial extent of pumped water. Combining PIV data with CFD models may be a valuable approach for future suspension-feeding studies

The Effect of Three-Dimensional Freestream Disturbances on the Supersonic Flow Past a Wedge

The interaction between a shock wave (attached to a wedge) and small amplitude, three-dimensional disturbances of a uniform, supersonic, freestream flow are investigated. The paper extends the two-dimensional study of Duck et al, through the use of vector potentials, which render the problem tractable by the same techniques as in the two-dimensional case, in particular by expansion of the solution by means of a Fourier-Bessel series, in appropriately chosen coordinates. Results are presented for specific classes of freestream disturbances, and the study shows conclusively that the shock is stable to all classes of disturbances (i.e. time periodic perturbations to the shock do not grow downstream), provided the flow downstream of the shock is supersonic (loosely corresponding to the weak shock solution). This is shown from our numerical results and also by asymptotic analysis of the Fourier-Bessel series, valid far downstream of the shock

Multicenter Study of Staging and Therapeutic Predictors of Hepatocellular Carcinoma Recurrence Following Transplantation

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/146434/1/lt25194.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/146434/2/lt25194_am.pd

The Semiclassical Modified Nonlinear Schroedinger Equation I: Modulation Theory and Spectral Analysis

We study an integrable modification of the focusing nonlinear Schroedinger equation from the point of view of semiclassical asymptotics. In particular, (i) we establish several important consequences of the mixed-type limiting quasilinear system including the existence of maps that embed the limiting forms of both the focusing and defocusing nonlinear Schroedinger equations into the framework of a single limiting system for the modified equation, (ii) we obtain bounds for the location of discrete spectrum for the associated spectral problem that are particularly suited to the semiclassical limit and that generalize known results for the spectrum of the nonselfadjoint Zakharov-Shabat spectral problem, and (iii) we present a multiparameter family of initial data for which we solve the associated spectral problem in terms of special functions for all values of the semiclassical scaling parameter. We view our results as part of a broader project to analyze the semiclassical limit of the modified nonlinear Schroedinger equation via the noncommutative steepest descent procedure of Deift and Zhou, and we also present a self-contained development of a Riemann-Hilbert problem of inverse scattering that differs from those given in the literature and that is well-adapted to semiclassical asymptotics.Comment: 56 Pages, 21 Figure

Incidence and Predictors of Post-thrombotic Syndrome in Patients With Proximal Dvt in a Real-world Setting: Findings From the GARFIELD-VTE Registry

Although substantial progress has been made in the pathophysiology and management of the post-thrombotic syndrome (PTS), several aspects still need clarification. Among them, the incidence and severity of PTS in the real world, the risk factors for its development, the value of patient\u27s self-evaluation, and the ability to identify patients at risk for severe PTS. Eligible participants (n = 1107) with proximal deep-vein thrombosis (DVT) from the global GARFIELD-VTE registry underwent conventional physician\u27s evaluation for PTS 36 months after diagnosis of their DVT using the Villalta score. In addition, 856 patients completed a Villalta questionnaire at 24 months. Variable selection was performed using stepwise algorithm, and predictors of severe PTS were incorporated into a multivariable risk model. The optimistic adjusted c-index was calculated using bootstrapping techniques. Over 36-months, 27.8% of patients developed incident PTS (mild in 18.7%, moderate in 5.7%, severe in 3.4%). Patients with incident PTS were older, had a lower prevalence of transient risk factors of DVT and a higher prevalence of persistent risk factors of DVT. Self-assessment of overall PTS at 24 months showed an agreement of 63.4% with respect to physician\u27s evaluations at 36 months. The severe PTS multivariable model provided an optimistic adjusted c-index of 0.68 (95% CI 0.59-0.77). Approximately a quarter of DVT patients experienced PTS over 36 months after VTE diagnosis. Patient\u27s self-assessment after 24 months provided added value for estimating incident PTS over 36 months. Multivariable risk analysis allowed good discrimination for severe PTS

Melarsoprol cyclodextrin inclusion complexes as promising oral candidates for the treatment of human African trypanosomiasis

Human African trypanosomiasis (HAT), or sleeping sickness, results from infection with the protozoan parasites <i>Trypanosoma brucei</i> (<i>T.b.</i>) <i>gambiense</i> or <i>T.b.rhodesiense</i> and is invariably fatal if untreated. There are 60 million people at risk from the disease throughout sub-Saharan Africa. The infection progresses from the haemolymphatic stage where parasites invade the blood, lymphatics and peripheral organs, to the late encephalitic stage where they enter the central nervous system (CNS) to cause serious neurological disease. The trivalent arsenical drug melarsoprol (Arsobal) is the only currently available treatment for CNS-stage <i>T.b.rhodesiense</i> infection. However, it must be administered intravenously due to the presence of propylene glycol solvent and is associated with numerous adverse reactions. A severe post-treatment reactive encephalopathy occurs in about 10% of treated patients, half of whom die. Thus melarsoprol kills 5% of all patients receiving it. Cyclodextrins have been used to improve the solubility and reduce the toxicity of a wide variety of drugs. We therefore investigated two melarsoprol cyclodextrin inclusion complexes; melarsoprol hydroxypropyl-͎-cyclodextrin and melarsoprol randomly-methylated-β-cyclodextrin. We found that these compounds retain trypanocidal properties <i>in vitro</i> and cure CNS-stage murine infections when delivered orally, once per day for 7-days, at a dosage of 0.05 mmol/kg. No overt signs of toxicity were detected. Parasite load within the brain was rapidly reduced following treatment onset and magnetic resonance imaging showed restoration of normal blood-brain barrier integrity on completion of chemotherapy. These findings strongly suggest that complexed melarsoprol could be employed as an oral treatment for CNS-stage HAT, delivering considerable improvements over current parenteral chemotherapy