On the origins of bread cultures in the Near East: a new archaeobotanical study of charred meals and cooking practices from Neolithic Çatalhöyük (Turkey) and Jarmo (Iraqi Kurdistan)

This PhD study integrates unstudied plant evidence from the Neolithic site of Çatalhöyük East (Turkey) and Jarmo (Iraqi Kurdistan), such as charred residues and amorphous charred organic material which were originally identified as “food” and “bread,” combined with the study of artefact assemblages (clay balls, pots and grinding stones), ethnographical studies and experimental food preparation and charring experiments. The main aim of this thesis is to assess the extent to which these early sites can be characterised as a bread culture (e.g. Fuller & Rowlands 2011) and how much diversity of cereal preparation techniques were employed in the past and how these diversified over time. The methods developed in this research project have provided a new means of characterising archaeobotanical assemblages with charred food fragments as representative of Neolithic “recipes” the chaîne opératoire, which links harvested cereals to cooked products for consumption. The intention of this study is to characterise how these recipes changed over time and might have varied across the Neolithic Çatalhöyük and Jarmo communities, shedding light on socio-economical differences

Production, Processing, and Storage at the Early Medieval Site of Senhora Do Barrocal (Municipality of Sátão, Central Portugal)

UIDB/00749/2020 UIDP/00749/2020Small rural places are largely absent from early medieval written sources, but they were profuse and relevant in regional settlements and economies. Only through archaeological and archaeobotanical investigation is it possible to unveil their structure and productive strategies; however, this kind of investigation is still uncommon in Iberia. Here, the assemblage of fruits/seeds, wood charcoal, and food remains from Senhora do Barrocal (SB) (Sátão, Portugal) will be presented and discussed in order to understand the crop production, processing, and storage. The site was destroyed by a fire somewhere between the 10th and the 11th centuries AD, which allowed the preservation of abundant plant remains in a storage area. Charcoal analyses suggest that the building was made with oak and chestnut timber. The massive fruits/seeds assemblage was dominated by cereals, mostly oat and rye, but also barley, millet, and naked wheat, some fully dehusked, others still hulled. Furthermore, evidence of food products has also been found, suggesting that the area was used for the storage of multiple foods and crops at different processing stages. SB is a good example of how communities adopted a diverse set of crops and multifaceted storage strategies to prevent food shortages and to endure in a harsh environment.publishersversionpublishe

Neolithic farmers or Neolithic foragers? Organic residue analysis of early pottery from Rakushechny Yar on the Lower Don (Russia)

The emergence of pottery in Europe is associated with two distinct traditions: hunter-gatherers in the east of the continent during the early 6th millennium BC and early agricultural communities in the south-west in the late 7th millennium BC. Here we investigate the function of pottery from the site of Rakushechny Yar, located at the Southern fringe of Eastern Europe, in this putative contact zone between these two economic ‘worlds’. To investigate, organic residue analysis was conducted on 120 samples from the Early Neolithic phase (ca. mid-6th millennium BC) along with microscopic and SEM analysis of associated foodcrusts. The results showed that the earliest phase of pottery use was predominantly used to process riverine resources. Many of the vessels have molecular and isotopic characteristics consistent with migratory fsh, such as sturgeon, confrmed by the identifcation of sturgeon bony structures embedded in the charred surface deposits. There was no evidence of dairy products in any of the vessels, despite the fact these have been routinely identifed in coeval sites to the south. Further analysis of some of the mammalian bones using ZooMS failed to demonstrate that domesticated animals were present in the Early Neolithic. Nevertheless, we argue that intensive exploitation of seasonally migratory fsh, accompanied by large-scale pottery production, created storable surpluses that led to similar socio-economic outcomes as documented in early agricultural societies

The use of early pottery by hunter-gatherers of the Eastern European forest-steppe

The Eastern European steppe and forest-steppe is a key region for understanding the emergence of pottery in Europe. The vast region encompasses the basins of two major waterways, the Don and the Volga rivers, and was occupied by hunter-gatherer-fisher communities attracted to highly productive forest/aquatic ecotones. The precise dates for the inception of pottery production in this region and the function of pottery is unknown, but such information is vital for charting the pan-Eurasian dispersal of pottery technology and whether there were common motivations for its adoption. To investigate, we conducted AMS dating, including a re-evaluation of legacy radiocarbon dates together with organic residue analysis and microscopy. The dating programme was able to clarify the sequence and show that hunter-gatherer pottery production was unlikely in this region before the 6th millennium BC. Regarding use, stable isotope and molecular analysis of 160 pottery samples from 35 sites across the region shows that terrestrial animal carcass fats were preferentially processed in pots at Middle Volga sites whereas aquatic resources dominate the residues in pottery from the Middle and Upper Don basin. This is supported by fragments of fish, legumes and grasses in the available charred deposits adhering to the inside of pottery from the Don basin. Since the sites from both river basins had similar environmental settings and were broadly contemporaneous, it is posited that pottery use was under strong cultural control, recognisable as separate sub-regional culinary traditions. The ‘aquatic hypothesis’, previously suggested to explain the emergence of Eurasian pottery, cannot be substantiated in this context

SARS-CoV-2 viral load in nasopharyngeal swabs is not an independent predictor of unfavorable outcome

The aim was to assess the ability of nasopharyngeal SARS-CoV-2 viral load at first patient’s hospital evaluation to predict unfavorable outcomes. We conducted a prospective cohort study including 321 adult patients with confirmed COVID-19 through RT-PCR in nasopharyngeal swabs. Quantitative Synthetic SARS-CoV-2 RNA cycle threshold values were used to calculate the viral load in log10 copies/mL. Disease severity at the end of follow up was categorized into mild, moderate, and severe. Primary endpoint was a composite of intensive care unit (ICU) admission and/or death (n = 85, 26.4%). Univariable and multivariable logistic regression analyses were performed. Nasopharyngeal SARS-CoV-2 viral load over the second quartile (≥ 7.35 log10 copies/mL, p = 0.003) and second tertile (≥ 8.27 log10 copies/mL, p = 0.01) were associated to unfavorable outcome in the unadjusted logistic regression analysis. However, in the final multivariable analysis, viral load was not independently associated with an unfavorable outcome. Five predictors were independently associated with increased odds of ICU admission and/or death: age ≥ 70 years, SpO2, neutrophils > 7.5 × 103/µL, lactate dehydrogenase ≥ 300 U/L, and C-reactive protein ≥ 100 mg/L. In summary, nasopharyngeal SARS-CoV-2 viral load on admission is generally high in patients with COVID-19, regardless of illness severity, but it cannot be used as an independent predictor of unfavorable clinical outcome

Dendritic cell deficiencies persist seven months after SARS-CoV-2 infection

Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV)-2 infection induces an exacerbated inflammation driven by innate immunity components. Dendritic cells (DCs) play a key role in the defense against viral infections, for instance plasmacytoid DCs (pDCs), have the capacity to produce vast amounts of interferon-alpha (IFN-α). In COVID-19 there is a deficit in DC numbers and IFN-α production, which has been associated with disease severity. In this work, we described that in addition to the DC deficiency, several DC activation and homing markers were altered in acute COVID-19 patients, which were associated with multiple inflammatory markers. Remarkably, previously hospitalized and nonhospitalized patients remained with decreased numbers of CD1c+ myeloid DCs and pDCs seven months after SARS-CoV-2 infection. Moreover, the expression of DC markers such as CD86 and CD4 were only restored in previously nonhospitalized patients, while no restoration of integrin β7 and indoleamine 2,3-dyoxigenase (IDO) levels were observed. These findings contribute to a better understanding of the immunological sequelae of COVID-19

Epidemiological trends of HIV/HCV coinfection in Spain, 2015-2019

Altres ajuts: Spanish AIDS Research Network; European Funding for Regional Development (FEDER).Objectives: We assessed the prevalence of anti-hepatitis C virus (HCV) antibodies and active HCV infection (HCV-RNA-positive) in people living with HIV (PLWH) in Spain in 2019 and compared the results with those of four similar studies performed during 2015-2018. Methods: The study was performed in 41 centres. Sample size was estimated for an accuracy of 1%. Patients were selected by random sampling with proportional allocation. Results: The reference population comprised 41 973 PLWH, and the sample size was 1325. HCV serostatus was known in 1316 PLWH (99.3%), of whom 376 (28.6%) were HCV antibody (Ab)-positive (78.7% were prior injection drug users); 29 were HCV-RNA-positive (2.2%). Of the 29 HCV-RNA-positive PLWH, infection was chronic in 24, it was acute/recent in one, and it was of unknown duration in four. Cirrhosis was present in 71 (5.4%) PLWH overall, three (10.3%) HCV-RNA-positive patients and 68 (23.4%) of those who cleared HCV after anti-HCV therapy (p = 0.04). The prevalence of anti-HCV antibodies decreased steadily from 37.7% in 2015 to 28.6% in 2019 (p < 0.001); the prevalence of active HCV infection decreased from 22.1% in 2015 to 2.2% in 2019 (p < 0.001). Uptake of anti-HCV treatment increased from 53.9% in 2015 to 95.0% in 2019 (p < 0.001). Conclusions: In Spain, the prevalence of active HCV infection among PLWH at the end of 2019 was 2.2%, i.e. 90.0% lower than in 2015. Increased exposure to DAAs was probably the main reason for this sharp reduction. Despite the high coverage of treatment with direct-acting antiviral agents, HCV-related cirrhosis remains significant in this population

Search for Gamma-Ray and Neutrino Coincidences Using HAWC and ANTARES Data

In the quest for high-energy neutrino sources, the Astrophysical Multimessenger Observatory Network (AMON) has implemented a new search by combining data from the High Altitude Water Cherenkov (HAWC) observatory and the Astronomy with a Neutrino Telescope and Abyss environmental RESearch (ANTARES) neutrino telescope. Using the same analysis strategy as in a previous detector combination of HAWC and IceCube data, we perform a search for coincidences in HAWC and ANTARES events that are below the threshold for sending public alerts in each individual detector. Data were collected between July 2015 and February 2020 with a livetime of 4.39 years. Over this time period, 3 coincident events with an estimated false-alarm rate of $< 1$ coincidence per year were found. This number is consistent with background expectations.Comment: 12 pages, 5 figures, 3 table

CIBERER : Spanish national network for research on rare diseases: A highly productive collaborative initiative

Altres ajuts: Instituto de Salud Carlos III (ISCIII); Ministerio de Ciencia e Innovación.CIBER (Center for Biomedical Network Research; Centro de Investigación Biomédica En Red) is a public national consortium created in 2006 under the umbrella of the Spanish National Institute of Health Carlos III (ISCIII). This innovative research structure comprises 11 different specific areas dedicated to the main public health priorities in the National Health System. CIBERER, the thematic area of CIBER focused on rare diseases (RDs) currently consists of 75 research groups belonging to universities, research centers, and hospitals of the entire country. CIBERER's mission is to be a center prioritizing and favoring collaboration and cooperation between biomedical and clinical research groups, with special emphasis on the aspects of genetic, molecular, biochemical, and cellular research of RDs. This research is the basis for providing new tools for the diagnosis and therapy of low-prevalence diseases, in line with the International Rare Diseases Research Consortium (IRDiRC) objectives, thus favoring translational research between the scientific environment of the laboratory and the clinical setting of health centers. In this article, we intend to review CIBERER's 15-year journey and summarize the main results obtained in terms of internationalization, scientific production, contributions toward the discovery of new therapies and novel genes associated to diseases, cooperation with patients' associations and many other topics related to RD research