Frameshifting in the P6 cDNA Phage Display System

Phage display is a powerful technique that enables easy identification of targets for any type of ligand. Targets are displayed at the phage surface as a fusion protein to one of the phage coat proteins. By means of a repeated process of affinity selection on a ligand, specific enrichment of displayed targets will occur. In our studies using C-terminal display of cDNA fragments to phage coat protein p6, we noticed the occasional enrichment of targets that do not contain an open reading frame. This event has previously been described in other phage display studies using N-terminal display of targets to phage coat proteins and was due to uncommon translational events like frameshifting. The aim of this study was to examine if C-terminal display of targets to p6 is also subjected to frameshifting. To this end, an enriched target not containing an open reading frame was selected and an E-tag was coupled at the C-terminus in order to measure target display at the surface of the phage. The tagged construct was subsequently expressed in 3 different reading frames and display of both target and E-tag measured to detect the occurrence of frameshifting. As a result, we were able to demonstrate display of the target both in the 0 and in the +1 reading frame indicating that frameshifting can also take place when C-terminal fusion to minor coat protein p6 is applied

Dataset on maternal attitudes about child maltreatment in nine countries using a Q-sort methodology

Analyses of the present data are reported in the article “Crossing Boundaries: A Pilot Study of Maternal Attitudes about Child Maltreatment in Nine Countries” [8]. Data were collected during home visits using the Maltreatment Q-Sort (MQS). A total of 466 mothers from nine different countries gave their opinion about child maltreatment by sorting 90 cards with parenting behaviors taken from the literature that reflect four types of child maltreatment, into 9 evenly distributed stacks (with 10 cards each) from least to most harmful for the child. This data article provides an overview of the content of the 90 items, which type of maltreatment they reflect, and the source of the items. The percentage of mothers labelling each of the MQS items as maltreatment is also presented. In addition, instructions are included about the administration of the MQS as well as data-entry and analyses of Q-sort data, accompanied by example datasets and syn- taxes. This can serve as a manual for researchers interested in using Q-sort data.(undefined

Crossing boundaries: a pilot study of maternal attitudes about child maltreatment in nine countries

Background: Definitions of child maltreatment vary widely between studies, and even more so between different cultural contexts. Objective: In this pilot study, we examine between-country variations in maternal notions about what constitutes child maltreatment. Participants and setting: The sample consisted of 466 mothers recruited in Chile, China, Greece, Iran, the Netherlands, Portugal, South Africa, Turkey, and Uruguay. Methods: All mothers completed a new Q-sort measure, ranking 90 parenting behaviors linked to subtypes of maltreatment (emotional neglect, emotional abuse, physical neglect, and physical abuse) from least to most detrimental to child development. Results: Between-country agreement regarding the harmfulness of the parenting behaviors was high (r = .45), but there were different patterns of reported harmfulness of subtypes of maltreatment (although driven mostly by deviating patterns in the South African sample). Further, there were significant country effects on the number and type of behaviors labeled as mal-treatment (pƞ2 = .15), and the number of items labeled as requiring intervention (pƞ2 = .19). Conclusions: Variations in conceptions of maltreatment need to be studied in larger more representative samples and taken into account in the assessment and treatment of child maltreatment across cultures

Measurements of inclusive J/ψ\psi production at midrapidity and forward rapidity in Pb−-Pb collisions at sNN\sqrt{s_{\mathrm{NN}}} = 5.02 TeV

International audienceThe measurements of the inclusive J/$\psi$ yield at midrapidity ($\left | y \right | < 0.9$) and forward rapidity (2.5 $< y <$ 4) in Pb$-$Pb collisions at $\sqrt{s_{\mathrm{NN}}}=5.02$ TeV with the ALICE detector at the LHC are reported. The inclusive J/$\psi$ production yields and nuclear modification factors, $R_{\rm AA}$, are measured as a function of the collision centrality, J/$\psi$ transverse momentum ($p_{\rm T}$), and rapidity. The J/$\psi$ average transverse momentum and squared transverse momentum ($\langle p_{\mathrm{T}}\rangle$ and $\langle p_{\mathrm{T}}^{\mathrm{2}}\rangle$) are evaluated as a function of the centrality at midrapidity. Compared to the previous ALICE publications, here the entire Pb$-$Pb collisions dataset collected during the LHC Run 2 is used, which improves the precision of the measurements and extends the $p_{\rm T}$ coverage. The $p_{\rm T}$-integrated $R_{\rm AA}$ shows a hint of an increasing trend towards unity from semicentral to central collisions at midrapidity, while it is flat at forward rapidity. The $p_{\rm T}$-differential $R_{\rm AA}$ shows a strong suppression at high $p_{\rm T}$ with less suppression at low $p_{\rm T}$ where it reaches a larger value at midrapidity compared to forward rapidity. The ratio of the $p_{\rm T}$-integrated yields of J/$\psi$ to those of D$^{0}$ mesons is reported for the first time for the central and semicentral event classes at midrapidity. Model calculations implementing charmonium production via the coalescence of charm quarks and antiquarks during the fireball evolution (transport models) or in a statistical approach with thermal weights are in good agreement with the data at low $p_{\rm T}$. At higher $p_{\rm T}$, the data are well described by transport models and a model based on energy loss in the strongly-interacting medium produced in nuclear collisions at the LHC

K∗^{*}(892)±^{\pm} resonance production in Pb−-Pb collisions at sNN\sqrt{s_{\rm NN}} = 5.02 TeV

International audienceThe production of K$^*$(892)$^\pm$ meson resonance is measured at midrapidity ($|y|8$ GeV/$c$, consistent with measurements for other light-flavored hadrons. The smallest values are observed in most central collisions, indicating larger energy loss of partons traversing the dense medium

Measurements of inclusive J/ψ\psi production at midrapidity and forward rapidity in Pb−-Pb collisions at sNN\sqrt{s_{\mathrm{NN}}} = 5.02 TeV

International audienceThe measurements of the inclusive J/$\psi$ yield at midrapidity ($\left | y \right | < 0.9$) and forward rapidity (2.5 $< y <$ 4) in Pb$-$Pb collisions at $\sqrt{s_{\mathrm{NN}}}=5.02$ TeV with the ALICE detector at the LHC are reported. The inclusive J/$\psi$ production yields and nuclear modification factors, $R_{\rm AA}$, are measured as a function of the collision centrality, J/$\psi$ transverse momentum ($p_{\rm T}$), and rapidity. The J/$\psi$ average transverse momentum and squared transverse momentum ($\langle p_{\mathrm{T}}\rangle$ and $\langle p_{\mathrm{T}}^{\mathrm{2}}\rangle$) are evaluated as a function of the centrality at midrapidity. Compared to the previous ALICE publications, here the entire Pb$-$Pb collisions dataset collected during the LHC Run 2 is used, which improves the precision of the measurements and extends the $p_{\rm T}$ coverage. The $p_{\rm T}$-integrated $R_{\rm AA}$ shows a hint of an increasing trend towards unity from semicentral to central collisions at midrapidity, while it is flat at forward rapidity. The $p_{\rm T}$-differential $R_{\rm AA}$ shows a strong suppression at high $p_{\rm T}$ with less suppression at low $p_{\rm T}$ where it reaches a larger value at midrapidity compared to forward rapidity. The ratio of the $p_{\rm T}$-integrated yields of J/$\psi$ to those of D$^{0}$ mesons is reported for the first time for the central and semicentral event classes at midrapidity. Model calculations implementing charmonium production via the coalescence of charm quarks and antiquarks during the fireball evolution (transport models) or in a statistical approach with thermal weights are in good agreement with the data at low $p_{\rm T}$. At higher $p_{\rm T}$, the data are well described by transport models and a model based on energy loss in the strongly-interacting medium produced in nuclear collisions at the LHC

Femtoscopic correlations of identical charged pions and kaons in pp collisions at s=13\sqrt{s}=13 TeV with event-shape selection

International audienceCollective behavior has been observed in high-energy heavy-ion collisions for several decades. Collectivity is driven by the high particle multiplicities that are produced in these collisions. At the Large Hadron Collider (LHC), features of collectivity have also been seen in high-multiplicity proton-proton collisions that can attain particle multiplicities comparable to peripheral Pb-Pb collisions. One of the possible signatures of collective behavior is the decrease of femtoscopic radii extracted from pion and kaon pairs emitted from high-multiplicity collisions with increasing pair transverse momentum. This decrease can be described in terms of an approximate transverse mass scaling. In the present work, femtoscopic analyses are carried out by the ALICE collaboration on charged pion and kaon pairs produced in pp collisions at $\sqrt{s}=13$ TeV from the LHC to study possible collectivity in pp collisions. The event-shape analysis method based on transverse sphericity is used to select for spherical versus jet-like events, and the effects of this selection on the femtoscopic radii for both charged pion and kaon pairs are studied. This is the first time this selection method has been applied to charged kaon pairs. An approximate transverse-mass scaling of the radii is found in all multiplicity ranges studied when the difference in the Lorentz boost for pions and kaons is taken into account. This observation does not support the hypothesis of collective expansion of hot and dense matter that should only occur in high-multiplicity events. A possible alternate explanation of the present results is based on a scenario of common emission conditions for pions and kaons in pp collisions for the multiplicity ranges studied

Measurements of long-range two-particle correlation over a wide pseudorapidity range in p−-Pb collisions at sNN=5.0\sqrt{s_{\rm NN}}=5.0 TeV

International audienceCorrelations in azimuthal angle extending over a long range in pseudorapidity between particles, usually called the "ridge" phenomenon, were discovered in heavy-ion collisions, and later found in pp and p$-$Pb collisions. In large systems, they are thought to arise from the expansion (collective flow) of the produced particles. Extending these measurements over a wider range in pseudorapidity and final-state particle multiplicity is important to understand better the origin of these long-range correlations in small-collision systems. In this Letter, measurements of the long-range correlations in p$-$Pb collisions at $\sqrt{s_{\rm NN}} = 5.02$ TeV are extended to a pseudorapidity gap of $\Delta\eta \sim 8$ between particles using the ALICE, forward multiplicity detectors. After suppressing non-flow correlations, e.g., from jet and resonance decays, the ridge structure is observed to persist up to a very large gap of $\Delta\eta \sim 8$ for the first time in p$-$Pb collisions. This shows that the collective flow-like correlations extend over an extensive pseudorapidity range also in small-collision systems such as p$-$Pb collisions. The pseudorapidity dependence of the second-order anisotropic flow coefficient, v2(η), is extracted from the long-range correlations. The $v_{2}(\eta)$ results are presented for a wide pseudorapidity range of $-3.1 < \eta < 4.8$ in various centrality classes in p$-$Pb collisions. To gain a comprehensive understanding of the source of anisotropic flow in small-collision systems, the $v_{2}(\eta)$ measurements are compared to hydrodynamic and transport model calculations. The comparison suggests that the final-state interactions play a dominant role in developing the anisotropic flow in small-collision systems

Studying strangeness and baryon production mechanisms through angular correlations between charged Ξ\Xi baryons and identified hadrons in pp collisions at s\sqrt{s} = 13 TeV

The angular correlations between charged $\Xi$ baryons and associated identified hadrons (pions, kaons, protons, $\Lambda$ baryons, and $\Xi$ baryons) are measured in pp collisions at $\sqrt{s} = 13$ TeV with the ALICE detector to give insight into the particle production mechanisms and balancing of quantum numbers on the microscopic level. In particular, the distribution of strangeness is investigated in the correlations between the doubly-strange $\Xi$ baryon and mesons and baryons that contain a single strange quark, K and $\Lambda$. As a reference, the results are compared to $\Xi\pi$ and $\Xi\mathrm{p}$ correlations, where the associated mesons and baryons do not contain a strange valence quark. These measurements are expected to be sensitive to whether strangeness is produced through string breaking or in a thermal production scenario. Furthermore, the multiplicity dependence of the correlation functions is measured to look for the turn-on of additional particle production mechanisms with event activity. The results are compared to predictions from the string-breaking model PYTHIA 8, including tunes with baryon junctions and rope hadronisation enabled, the cluster hadronisation model HERWIG 7, and the core-corona model EPOS-LHC. While some aspects of the experimental data are described quantitatively or qualitatively by the Monte Carlo models, no one model can match all features of the data. These results provide stringent constraints on the strangeness and baryon number production mechanisms in pp collisions.The angular correlations between charged $\Xi$ baryons and associated identified hadrons (pions, kaons, protons, $\Lambda$ baryons, and $\Xi$ baryons) are measured in pp collisions at $\sqrt{s} = 13$ TeV with the ALICE detector to give insight into the particle production mechanisms and balancing of quantum numbers on the microscopic level. In particular, the distribution of strangeness is investigated in the correlations between the doubly-strange $\Xi$ baryon and mesons and baryons that contain a single strange quark, K and $\Lambda$. As a reference, the results are compared to $\Xi\pi$ and $\Xi\mathrm{p}$ correlations, where the associated mesons and baryons do not contain a strange valence quark. These measurements are expected to be sensitive to whether strangeness is produced through string breaking or in a thermal production scenario. Furthermore, the multiplicity dependence of the correlation functions is measured to look for the turn-on of additional particle production mechanisms with event activity. The results are compared to predictions from the string-breaking model PYTHIA 8, including tunes with baryon junctions and rope hadronisation enabled, the cluster hadronisation model HERWIG 7, and the core-corona model EPOS-LHC. While some aspects of the experimental data are described quantitatively or qualitatively by the Monte Carlo models, no one model can match all features of the data. These results provide stringent constraints on the strangeness and baryon number production mechanisms in pp collisions