Natural variation in Arabidopsis thaliana reveals shoot ionome, biomass, and gene expression changes as biomarkers for zinc deficiency tolerance

Zinc (Zn) is an essential nutrient for plants, with a crucial role as a cofactor for many enzymes. Approximately one-third of the global arable land area is Zn deficient, leading to reduced crop yield and quality. To improve crop tolerance to Zn deficiency, it is important to understand the mechanisms plants have adopted to tolerate suboptimal Zn supply. In this study, physiological and molecular aspects of traits related to Zn deficiency tolerance were examined in a panel of 19 Arabidopsis thaliana accessions. Accessions showed a larger variation for shoot biomass than for Zn concentration, indicating that they have different requirements for their minimal Zn concentration required for growth. Accessions with a higher tolerance to Zn deficiency showed an increased expression of the Zn deficiency-responsive genes ZIP4 and IRT3 in comparison with Zn deficiency-sensitive accessions. Changes in the shoot ionome, as a result of the Zn treatment of the plants, were used to build a multinomial logistic regression model able to distinguish plants regarding their Zn nutritional status. This set of biomarkers, reflecting the A. thaliana response to Zn deficiency and Zn deficiency tolerance, can be useful for future studies aiming to improve the performance and Zn status of crop plants grown under suboptimal Zn concentrations

New insights into the genetic etiology of Alzheimer's disease and related dementias

Characterization of the genetic landscape of Alzheimer's disease (AD) and related dementias (ADD) provides a unique opportunity for a better understanding of the associated pathophysiological processes. We performed a two-stage genome-wide association study totaling 111,326 clinically diagnosed/'proxy' AD cases and 677,663 controls. We found 75 risk loci, of which 42 were new at the time of analysis. Pathway enrichment analyses confirmed the involvement of amyloid/tau pathways and highlighted microglia implication. Gene prioritization in the new loci identified 31 genes that were suggestive of new genetically associated processes, including the tumor necrosis factor alpha pathway through the linear ubiquitin chain assembly complex. We also built a new genetic risk score associated with the risk of future AD/dementia or progression from mild cognitive impairment to AD/dementia. The improvement in prediction led to a 1.6- to 1.9-fold increase in AD risk from the lowest to the highest decile, in addition to effects of age and the APOE ε4 allele

Multiancestry analysis of the HLA locus in Alzheimer’s and Parkinson’s diseases uncovers a shared adaptive immune response mediated by HLA-DRB1*04 subtypes

Across multiancestry groups, we analyzed Human Leukocyte Antigen (HLA) associations in over 176,000 individuals with Parkinson’s disease (PD) and Alzheimer’s disease (AD) versus controls. We demonstrate that the two diseases share the same protective association at the HLA locus. HLA-specific fine-mapping showed that hierarchical protective effects of HLA-DRB1*04 subtypes best accounted for the association, strongest with HLA-DRB1*04:04 and HLA-DRB1*04:07, and intermediary with HLA-DRB1*04:01 and HLA-DRB1*04:03. The same signal was associated with decreased neurofibrillary tangles in postmortem brains and was associated with reduced tau levels in cerebrospinal fluid and to a lower extent with increased Aβ42. Protective HLA-DRB1*04 subtypes strongly bound the aggregation-prone tau PHF6 sequence, however only when acetylated at a lysine (K311), a common posttranslational modification central to tau aggregation. An HLA-DRB1*04-mediated adaptive immune response decreases PD and AD risks, potentially by acting against tau, offering the possibility of therapeutic avenues

Produção e qualidade de azevém-anual submetido a adubação nitrogenada sob pastejo por cordeiros Production and quality of annual ryegrass submitted to nitrogen fertilization under grazing by lambs

O objetivo neste trabalho foi verificar como a adubação nitrogenada pode afetar a produção e a qualidade da massa de forragem em pastagem de azevém-anual (Lolium multiflorum Lam.) sob lotação contínua de cordeiros de corte. O azevém foi implantado em 6 de junho de 2006, em sistema de plantio direto com densidade de semeadura de 45 kg de sementes/ha. A adubação de base foi de 300 kg/ha, sem nitrogênio, com 60 kg/ha P2O5 e 60 kg/ha K2O. As adubações corresponderam a quatro doses de nitrogênio (N) na forma de ureia (45% de N) em aplicação de cobertura após 35 dias do plantio: 0; 75; 150; ou 225 kg/ha de N. O período de avaliação foi de 84 dias. Para cada kg de nitrogênio aplicado na pastagem de azevém, verificaram-se aumentos lineares de 2,82 kg/ha de massa de forragem, 1,28 kg/ha de massa seca de folhas verdes, 2,47 perfilhos/m² e 15,84 kg/ha de massa de forragem total. As doses de nitrogênio aplicadas não influenciaram os teores de proteína bruta (21,21%), fibra detergente ácido (25,90%) e fibra detergente neutro (54,93%) da forragem colhida por meio da simulação do pastejo. O aumento nas doses de nitrogênio interferem positivamente na taxa de acúmulo, o que proporciona maior massa de forragem total.<br>The aim of this work was to evaluate how nitrogen fertilization can affect forage mass production and quality on annual Italian ryegrass (Lolium multiflorum Lam.) pasture under continuous stocking of beef lambs. Ryegrass was established on June 6th, 2006, on no-tillage cropping system with seed density of 45 kg seeds/ha. Base fertilization was 300 kg/ha without N, with 60 kg/ha P2O5 and 60 kg/ha K2O. Fertilization consisted on four doses of nitrogen (N) using urea fertilizer (45% de N) in covering application 35 days after seeding: 0; 75; 150; or 225 kg/ha N. Periods of evaluations lasted 84 days. For each kg of nitrogen applied on ryegrass pasture, it was observed linear increases of 2.82 kg/ha of forage mass, 1.28 kg/ha of green leaf dry mass, 2.47 tillers/m² and 15.84 kg/ha of total forage mass. Doses of applied nitrogen did not affect crude protein contents (21.21%), acid detergent fiber (25.90%) and neutral detergent fiber (54.93%) of forage harvested through grazing simulation. The increase on nitrogen doses interfere positively in the accumulation rate, providing greater total forage mass

Brazilian Flora 2020: Leveraging the power of a collaborative scientific network

International audienceThe shortage of reliable primary taxonomic data limits the description of biological taxa and the understanding of biodiversity patterns and processes, complicating biogeographical, ecological, and evolutionary studies. This deficit creates a significant taxonomic impediment to biodiversity research and conservation planning. The taxonomic impediment and the biodiversity crisis are widely recognized, highlighting the urgent need for reliable taxonomic data. Over the past decade, numerous countries worldwide have devoted considerable effort to Target 1 of the Global Strategy for Plant Conservation (GSPC), which called for the preparation of a working list of all known plant species by 2010 and an online world Flora by 2020. Brazil is a megadiverse country, home to more of the world's known plant species than any other country. Despite that, Flora Brasiliensis, concluded in 1906, was the last comprehensive treatment of the Brazilian flora. The lack of accurate estimates of the number of species of algae, fungi, and plants occurring in Brazil contributes to the prevailing taxonomic impediment and delays progress towards the GSPC targets. Over the past 12 years, a legion of taxonomists motivated to meet Target 1 of the GSPC, worked together to gather and integrate knowledge on the algal, plant, and fungal diversity of Brazil. Overall, a team of about 980 taxonomists joined efforts in a highly collaborative project that used cybertaxonomy to prepare an updated Flora of Brazil, showing the power of scientific collaboration to reach ambitious goals. This paper presents an overview of the Brazilian Flora 2020 and provides taxonomic and spatial updates on the algae, fungi, and plants found in one of the world's most biodiverse countries. We further identify collection gaps and summarize future goals that extend beyond 2020. Our results show that Brazil is home to 46,975 native species of algae, fungi, and plants, of which 19,669 are endemic to the country. The data compiled to date suggests that the Atlantic Rainforest might be the most diverse Brazilian domain for all plant groups except gymnosperms, which are most diverse in the Amazon. However, scientific knowledge of Brazilian diversity is still unequally distributed, with the Atlantic Rainforest and the Cerrado being the most intensively sampled and studied biomes in the country. In times of “scientific reductionism”, with botanical and mycological sciences suffering pervasive depreciation in recent decades, the first online Flora of Brazil 2020 significantly enhanced the quality and quantity of taxonomic data available for algae, fungi, and plants from Brazil. This project also made all the information freely available online, providing a firm foundation for future research and for the management, conservation, and sustainable use of the Brazilian funga and flora