1s2p resonant inelastic x-ray scattering in a-Fe2O3

We report experimental and theoretical results on the Fe K edge x-ray absorption spectrum and 1s2p resonant inelastic x-ray scattering (RIXS) spectra in a-Fe2O3 . The results are interpreted using an FeO6^9- cluster model with intra-atomic multiplet coupling and interatomic covalency hybridization. The 1s2p RIXS is treated as a coherent second-order optical process. It is shown that the double-peak structure in the pre-edge region of Fe K absorption spectrum is due to the cubic crystal-field splitting, and that the intensity of the eg (t2g) component in the 1s2p resonant inelastic spectrum is enhanced by tuning the incident photon energy to the eg (t2g) component in the absorption spectrum

Hard Real Time Quick Exafs Data Acquisition With All Open Source Software on a Commodity Personal Computer.

We describe here the data acquisition subsystem of the Quick EXAFS (QEXAFS) experiment at the National Synchrotron Light Source of Brookhaven National Laboratory. For ease of future growth and flexibility, almost all software components are open source with very active maintainers. Among them, Linux running on x86 desktop computer, RTAI for real-time response, COMEDI driver for the data acquisition hardware, Qt and PyQt for graphical user interface, PyQwt for plotting, and Python for scripting. The signal (A/D) and energy-reading (IK220 encoder) devices in the PCI computer are also EPICS enabled. The control system scans the monochromator energy through a networked EPICS motor. With the real-time kernel, the system is capable of deterministic data-sampling period of tens of micro-seconds with typical timing-jitter of several micro-seconds. At the same time, Linux is running in other non-real-time processes handling the user-interface. A modern Qt-based controls-front end enhances productivity. The fast plotting and zooming of data in time or energy coordinates let the experimenters verify the quality of the data before detailed analysis. Python scripting is built-in for automation. The typical data-rate for continuous runs are around ten mega-bytes per minute

Electromagnetic induced transparency and slow light in interacting quantum degenerate atomic gases

We systematically develop the full quantum theory for the electromagnetic induced transparency (EIT) and slow light properties in ultracold Bose and Fermi gases. It shows a very different property from the classical theory which assumes frozen atomic motion. For example, the speed of light inside the atomic gases can be changed dramatically near the Bose-Einstein condensation temperature, while the presence of the Fermi sea can destroy the EIT effect even at zero temperature. From experimental point of view, such quantum EIT property is mostly manifested in the counter-propagating excitation schemes in either the low-lying Rydberg transition with a narrow line width or in the D2 transitions with a very weak coupling field. We further investigate the interaction effects on the EIT for a weakly interacting Bose-Einstein condensate, showing an inhomogeneous broadening of the EIT profile and nontrivial change of the light speed due to the quantum many-body effects beyond mean field energy shifts.Comment: 7 figure

Including diverse and admixed populations in genetic epidemiology research

The inclusion of ancestrally diverse participants in genetic studies can lead to new discoveries and is important to ensure equitable health care benefit from research advances. Here, members of the Ethical, Legal, Social, Implications (ELSI) committee of the International Genetic Epidemiology Society (IGES) offer perspectives on methods and analysis tools for the conduct of inclusive genetic epidemiology research, with a focus on admixed and ancestrally diverse populations in support of reproducible research practices. We emphasize the importance of distinguishing socially defined population categorizations from genetic ancestry in the design, analysis, reporting, and interpretation of genetic epidemiology research findings. Finally, we discuss the current state of genomic resources used in genetic association studies, functional interpretation, and clinical and public health translation of genomic findings with respect to diverse populations

Inelastic x-ray scattering at the National Synchrotron Light

The research program at the inelastic x-ray scattering beamline at the National Synchrotron Light Source is focused on the study of elementary excitations in condensed matter with total energy resolution on the order of 0.1 eV to 1.0 eV. Results from selected experiments are reported to demonstrate the capability of the beamline as well as the information can be obtained from inelastic x- ray scattering experiments

Application of numerical methods in the study operational characteristics of the combustion chamber (pumping unit GPA-16U) at different loads

We report on X-ray resonance exchange and neutron scattering of metallic GdS. At the LII and LIII absorption edges of Gd, resonance enhancements of more than two orders of magnitude over the non-resonant magnetic scattering are observed. Polarisation analysis proves that these enhancements are due to dipolar transitions from the 2p to the 5d states. The branching ratio between the LII and LIII edges of 2.5 suggests a polarisation of the 5d electrons in the ground state. The antiferromagnetic order is of type II in the fcc lattice. Single crystal diffraction of hot neutrons suggests that the spin direction lies within the (111) planes with a value for the sublattice magnetisation of 6.51(3) $\mu_{\rm B}$. The critical exponent for the sublattice magnetisation has a value of $\beta = 0.38(2)$ in agreement with a pure Heisenberg model. Above TN, a sharp component persists in the critical diffuse scattering. Lattice distortions give indications for two additional low-temperature phase transitions at about 49 K and 32 K. We argue that these transitions are not connected to spin reorientations and discuss the possible influence of fourth-order exchange interactions

The FANCM:p.Arg658* truncating variant is associated with risk of triple-negative breast cancer.

Breast cancer is a common disease partially caused by genetic risk factors. Germline pathogenic variants in DNA repair genes BRCA1, BRCA2, PALB2, ATM, and CHEK2 are associated with breast cancer risk. FANCM, which encodes for a DNA translocase, has been proposed as a breast cancer predisposition gene, with greater effects for the ER-negative and triple-negative breast cancer (TNBC) subtypes. We tested the three recurrent protein-truncating variants FANCM:p.Arg658*, p.Gln1701*, and p.Arg1931* for association with breast cancer risk in 67,112 cases, 53,766 controls, and 26,662 carriers of pathogenic variants of BRCA1 or BRCA2. These three variants were also studied functionally by measuring survival and chromosome fragility in FANCM -/- patient-derived immortalized fibroblasts treated with diepoxybutane or olaparib. We observed that FANCM:p.Arg658* was associated with increased risk of ER-negative disease and TNBC (OR = 2.44, P = 0.034 and OR = 3.79; P = 0.009, respectively). In a country-restricted analysis, we confirmed the associations detected for FANCM:p.Arg658* and found that also FANCM:p.Arg1931* was associated with ER-negative breast cancer risk (OR = 1.96; P = 0.006). The functional results indicated that all three variants were deleterious affecting cell survival and chromosome stability with FANCM:p.Arg658* causing more severe phenotypes. In conclusion, we confirmed that the two rare FANCM deleterious variants p.Arg658* and p.Arg1931* are risk factors for ER-negative and TNBC subtypes. Overall our data suggest that the effect of truncating variants on breast cancer risk may depend on their position in the gene. Cell sensitivity to olaparib exposure, identifies a possible therapeutic option to treat FANCM-associated tumors

Fine Mapping of the 1p36 Deletion Syndrome Identifies Mutation of PRDM16 as a Cause of Cardiomyopathy

Deletion 1p36 syndrome is recognized as the most common terminal deletion syndrome. Here, we describe the loss of a gene within the deletion that is responsible for the cardiomyopathy associated with monosomy 1p36, and we confirm its role in nonsyndromic left ventricular noncompaction cardiomyopathy (LVNC) and dilated cardiomyopathy (DCM). With our own data and publically available data from array comparative genomic hybridization (aCGH), we identified a minimal deletion for the cardiomyopathy associated with 1p36del syndrome that included only the terminal 14 exons of the transcription factor PRDM16 (PR domain containing 16), a gene that had previously been shown to direct brown fat determination and differentiation. Resequencing of PRDM16 in a cohort of 75 nonsyndromic individuals with LVNC detected three mutations, including one truncation mutant, one frameshift null mutation, and a single missense mutant. In addition, in a series of cardiac biopsies from 131 individuals with DCM, we found 5 individuals with 4 previously unreported nonsynonymous variants in the coding region of PRDM16. None of the PRDM16 mutations identified were observed in more than 6,400 controls. PRDM16 has not previously been associated with cardiac disease but is localized in the nuclei of cardiomyocytes throughout murine and human development and in the adult heart. Modeling of PRDM16 haploinsufficiency and a human truncation mutant in zebrafish resulted in both contractile dysfunction and partial uncoupling of cardiomyocytes and also revealed evidence of impaired cardiomyocyte proliferative capacity. In conclusion, mutation of PRDM16 causes the cardiomyopathy in 1p36 deletion syndrome as well as a proportion of nonsyndromic LVNC and DCM