A Fast and Accurate Nonlinear Spectral Method for Image Recognition and Registration

This article addresses the problem of two- and higher dimensional pattern matching, i.e. the identification of instances of a template within a larger signal space, which is a form of registration. Unlike traditional correlation, we aim at obtaining more selective matchings by considering more strict comparisons of gray-level intensity. In order to achieve fast matching, a nonlinear thresholded version of the fast Fourier transform is applied to a gray-level decomposition of the original 2D image. The potential of the method is substantiated with respect to real data involving the selective identification of neuronal cell bodies in gray-level images.Comment: 4 pages, 3 figure

Seeking for Simplicity in Complex Networks

Complex networks can be understood as graphs whose connectivity deviates from those of regular or near-regular graphs, which are understood as being `simple'. While a great deal of the attention so far dedicated to complex networks has been duly driven by the `complex' nature of these structures, in this work we address the identification of simplicity, in the sense of regularity, in complex networks. The basic idea is to seek for subgraphs exhibiting small dispersion (e.g. standard deviation or entropy) of local measurements such as the node degree and clustering coefficient. This approach paves the way for the identification of subgraphs (patches) with nearly uniform connectivity, therefore complementing the characterization of the complexity of networks. We also performed analysis of cascade failures, revealing that the removal of vertices in `simple' regions results in smaller damage to the network structure than the removal of vertices in the heterogeneous regions. We illustrate the potential of the proposed methodology with respect to four theoretical models as well as protein-protein interaction networks of three different species. Our results suggest that the simplicity of protein interaction grows as the result of natural selection. This increase in simplicity makes these networks more robust to cascade failures.Comment: 5 pages, 3 figures, 1 table. Submitted to Physical Review Letter

On the Efficiency of Data Representation on the Modeling and Characterization of Complex Networks

Specific choices about how to represent complex networks can have a substantial effect on the execution time required for the respective construction and analysis of those structures. In this work we report a comparison of the effects of representing complex networks statically as matrices or dynamically as spase structures. Three theoretical models of complex networks are considered: two types of Erdos-Renyi as well as the Barabasi-Albert model. We investigated the effect of the different representations with respect to the construction and measurement of several topological properties (i.e. degree, clustering coefficient, shortest path length, and betweenness centrality). We found that different forms of representation generally have a substantial effect on the execution time, with the sparse representation frequently resulting in remarkably superior performance

The Spread of Opinions and Proportional Voting

Election results are determined by numerous social factors that affect the formation of opinion of the voters, including the network of interactions between them and the dynamics of opinion influence. In this work we study the result of proportional elections using an opinion dynamics model similar to simple opinion spreading over a complex network. Erdos-Renyi, Barabasi-Albert, regular lattices and randomly augmented lattices are considered as models of the underlying social networks. The model reproduces the power law behavior of number of candidates with a given number of votes found in real elections with the correct slope, a cutoff for larger number of votes and a plateau for small number of votes. It is found that the small world property of the underlying network is fundamental for the emergence of the power law regime.Comment: 10 pages, 7 figure

Complex networks: the key to systems biology

Though introduced recently, complex networks research has grown steadily because of its potential to represent, characterize and model a wide range of intricate natural systems and phenomena. Because of the intrinsic complexity and systemic organization of life, complex networks provide a specially promising framework for systems biology investigation. The current article is an up-to-date review of the major developments related to the application of complex networks in biology, with special attention focused on the more recent literature. The main concepts and models of complex networks are presented and illustrated in an accessible fashion. Three main types of networks are covered: transcriptional regulatory networks, protein-protein interaction networks and metabolic networks. The key role of complex networks for systems biology is extensively illustrated by several of the papers reviewed.FAPESPCNP

Analyzing Trails in Complex Networks

Even more interesting than the intricate organization of complex networks are the dynamical behavior of systems which such structures underly. Among the many types of dynamics, one particularly interesting category involves the evolution of trails left by moving agents progressing through random walks and dilating processes in a complex network. The emergence of trails is present in many dynamical process, such as pedestrian traffic, information flow and metabolic pathways. Important problems related with trails include the reconstruction of the trail and the identification of its source, when complete knowledge of the trail is missing. In addition, the following of trails in multi-agent systems represent a particularly interesting situation related to pedestrian dynamics and swarming intelligence. The present work addresses these three issues while taking into account permanent and transient marks left in the visited nodes. Different topologies are considered for trail reconstruction and trail source identification, including four complex networks models and four real networks, namely the Internet, the US airlines network, an email network and the scientific collaboration network of complex network researchers. Our results show that the topology of the network influence in trail reconstruction, source identification and agent dynamics.Comment: 10 pages, 16 figures. A working manuscript, comments and criticisms welcome

Concentric Characterization and Classification of Complex Network Nodes: Theory and Application to Institutional Collaboration

Differently from theoretical scale-free networks, most of real networks present multi-scale behavior with nodes structured in different types of functional groups and communities. While the majority of approaches for classification of nodes in a complex network has relied on local measurements of the topology/connectivity around each node, valuable information about node functionality can be obtained by Concentric (or Hierarchical) Measurements. In this paper we explore the possibility of using a set of Concentric Measurements and agglomerative clustering methods in order to obtain a set of functional groups of nodes. Concentric clustering coefficient and convergence ratio are chosen as segregation parameters for the analysis of a institutional collaboration network including various known communities (departments of the University of S\~ao Paulo). A dendogram is obtained and the results are analyzed and discussed. Among the interesting obtained findings, we emphasize the scale-free nature of the obtained network, as well as the identification of different patterns of authorship emerging from different areas (e.g. human and exact sciences). Another interesting result concerns the relatively uniform distribution of hubs along the concentric levels, contrariwise to the non-uniform pattern found in theoretical scale free networks such as the BA model.Comment: 15 pages, 13 figure

A Complex Networks Approach for Data Clustering

Many methods have been developed for data clustering, such as k-means, expectation maximization and algorithms based on graph theory. In this latter case, graphs are generally constructed by taking into account the Euclidian distance as a similarity measure, and partitioned using spectral methods. However, these methods are not accurate when the clusters are not well separated. In addition, it is not possible to automatically determine the number of clusters. These limitations can be overcome by taking into account network community identification algorithms. In this work, we propose a methodology for data clustering based on complex networks theory. We compare different metrics for quantifying the similarity between objects and take into account three community finding techniques. This approach is applied to two real-world databases and to two sets of artificially generated data. By comparing our method with traditional clustering approaches, we verify that the proximity measures given by the Chebyshev and Manhattan distances are the most suitable metrics to quantify the similarity between objects. In addition, the community identification method based on the greedy optimization provides the smallest misclassification rates.Comment: 9 pages, 8 Figure