Phase Diagram of Bosonic Atoms in Two-Color Superlattices

We investigate the zero temperature phase diagram of a gas of bosonic atoms in one- and two-color standing-wave lattices in the framework of the Bose-Hubbard model. We first introduce some relevant physical quantities; superfluid fraction, condensate fraction, quasimomentum distribution, and matter-wave interference pattern. We then discuss the relationships between them on the formal level and show that the superfluid fraction, which is the relevant order parameter for the superfluid to Mott-insulator transition, cannot be probed directly via the matter wave interference patterns. The formal considerations are supported by exact numerical solutions of the Bose-Hubbard model for uniform one-dimensional systems. We then map out the phase diagram of bosons in non-uniform lattices. The emphasis is on optical two-color superlattices which exhibit a sinusoidal modulation of the well depth and can be easily realized experimentally. From the study of the superfluid fraction, the energy gap, and other quantities we identify new zero-temperature phases, including a localized and a quasi Bose-glass phase, and discuss prospects for their experimental observation.Comment: 18 pages, 17 figures, using REVTEX

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Effect of glycerol on pellet mill production efficiency

Crude glycerol is a by-product of the biofuels industry, which has the potential to be used as a feed ingredient in animal diets. However, little is known about glycerol’s nutritional value or how it impacts feed quality and feed processing efficiency. Three experiments were conducted to evaluate the effects of glycerol on production efficiency of a pellet mill. In all three experiments, diets were manufactured, pelleted, and data collected at the KSU Grain Science Feed Mill. All diets were steam conditioned to 85°F and pelleted at 150°F using a CPM pellet mill equipped with a 4 mm × 32 mm pellet die. In Exp. 1, the six treatments were a corn-soybean meal-based swine grower diet formulated to contain 0, 3, 6, 9, 12, and 15% crude glycerol. Experiment 2 included seven treatments: the control with no added soy oil or glycerol, the control diet with 3 or 6% added soy oil, the control diet with 3 or 6% added glycerol, and the control with 6 or 12% of a 50:50 soy oil to glycerol blend. Experiment 3 included five treatments: a control with no added lactose or glycerol, the control diet with 3.6 or 7.2% lactose, or the control with 3.6 or 7.2% glycerol. Each experimental diet was replicated by manufacturing a new batch of feed three times. Glycerol lowered delta temperature, amperage, and motor load in Exp. 1, 2, and 3. The addition of glycerol consistently improved pellet quality. Production rate was not affected by the addition of glycerol; however, glycerol decreased total energy usage (KWh/t). Furthermore, glycerol can be added to a diet in combination with soy oil in a blend to improve production efficiency and pellet quality compared to a diet containing only soy oil. The addition of glycerol will improve the production efficiency of pelleting, pellet quality, and decrease energy cost when included in diets prior to pelleting

Effects of enzyme complex SSF (solid state fermentation) in pellet diets for Nile tilapia

The effects of enzyme complex SSF (solid state fermentation) on growth performance and the availability of sucrose and monosaccharides in the chyme of Nile were involved. The study included 360 fish (70g±4.43) in a completely randomized design with six dietary treatments (0, 50, 100, 150, 200 and 250 ppm of SSF) arranged in six replicates, with 10 fish per replicate. Every 15 days, one tilapia of each experimental unit was sacrificed for analyses of carbohydrate in the chyme. On day 60 of the experiment, the performance parameters were measured. There was a linear effect according to treatment for final weight and weight gain. For the other performance parameters, there were no differences. There was quadratic effect for sucrose and glucose in function of the treatment, whereas the fructose levels increased linearly. The addition of 150 ppm of the enzyme complex SSF in the feed improves the performance of Nile tilapia and increases the availability of sucrose and monosaccharides in the chyme

A systems biology approach to Down syndrome: Identification of Notch/Wnt dysregulation in a model of stem cells aging

Stem cells are central to the development and maintenance of many tissues. This is due to their capacity for extensive proliferation and differentiation into effector cells. More recently it has been shown that the proliferative and differentiative ability of stem cells decreases with age, suggesting that this may play a role in tissue aging. Down syndrome (DS), is associated with many of the signs of premature tissue aging including T-cell deficiency, increased incidence of early Alzheimer-type, Myelodysplastic-type disease and leukaemia. Previously we have shown that both hematopoietic (HSC) and neural stem cells (NSC) in patients affected by DS showed signs of accelerated aging. In this study we tested the hypothesis that changes in gene expression in HSC and NSC of patients affected by DS reflect changes occurring in stem cells with age. The profiles of genes expressed in HSC and NSC from DS patients highlight pathways associated with cellular aging including a downregulation of DNA repair genes and increases in proapoptotic genes, s-phase cell cycle genes, inflammation and angiogenesis genes. Interestingly, Notch signaling was identified as a potential hub, which when deregulated may drive stem cell aging. These data suggests that DS is a valuable model to study early events in stem cell aging