Effect of the North Equatorial Counter Current on the generation and propagation of internal solitary waves off the Amazon shelf (SAR observations)

Synthetic aperture radar (SAR) imagery from the Amazon shelf break region in the tropical west Atlantic reveals for the first time the two-dimensional horizontal structure of an intense Internal Solitary Wave (ISW) field, whose first surface manifestations are detected several hundred kilometres away from the nearest forcing bathymetry. Composite maps and an energy budget analysis (provided from the Hybrid Coordinate Ocean Model - HYCOM) help to identify two major ISW pathways emanating from the steep slopes of a small promontory (or headland) near 44 degrees W and 0 degrees N, which are seen to extend for over 500 km into the open ocean. Further analysis in the SAR reveals propagation speeds above 3 ms(-1), which are amongst the fastest ever recorded. The main characteristics of the ISWs are further discussed based on a statistical analysis, and seasonal variability is found for one of the ISW sources. This seasonal variability is discussed in light of the North Equatorial Counter Current. The remote appearance of the ISW sea surface manifestations is explained by a late disintegration of the internal tide (IT), which is further investigated based on the SAR data and climatological monthly means (for stratification and currents). Acknowledging the possibility of a late disintegration of the IT may help explain the remote-sensing views of other ISWs in the world's oceans

SAR IMAGING OF WAVE TAILS: RECOGNITION OF SECOND MODE INTERNAL WAVE PATTERNS AND SOME MECHANISMS OF THEIR FORMATION

Mode-2 internal waves are usually not as energetic as larger mode-1 Internal Solitary Waves (ISWs), but they have attracted a great deal of attention in recent years because they have been identified as playing a significant role in mixing shelf waters [1]. This mixing is particularly effective for mode-2 ISWs because the location of these waves in the middle of the pycnocline plays an important role in eroding the barrier between the base of the surface mixed layer and the stratified deep layer below. An urgent problem in physical oceanography is therefore to account for the magnitude and distribution of ISW-driven mixing, including mode-2 ISWs. Several generation mechanisms of mode-2 ISWs have been identified. These include: (1) mode-1 ISWs propagating onshore (shoaling) and entering the breaking instability stage, or propagating over a steep sill; (2) a mode-1 ISW propagating offshore (antishoaling) over steep slopes of the shelf break, and undergoing modal transformation; (3) intrusion of the whole head of a gravity current into a three-layer fluid; (4) impingement of an internal tidal beam on the pycnocline, itself emanating from critical bathymetry; (5) nonlinear disintegration of internal tide modes; (6) lee wave mechanism. In this paper we provide methods to identify internal wave features denominated Wave Tails in SAR images of the ocean surface, which are many times associated with second mode internal waves. The SAR case studies that are presented portray evidence of the aforementioned generation mechanisms, and we further discuss possible methods to discriminate between the various types of mode-2 ISWs in SAR images, that emerge from these physical mechanisms. Some of the SAR images correspond to numerical simulations with the MITgcm in fully nonlinear and nonhydrostatic mode and in a 2D configuration with realistic stratification, bathymetry and other environmental conditions. Results of a global survey with some of these observations are presented, including: the Mascarene Ridge of the Indian Ocean; South China Sea; Andaman Sea; tropical Atlantic off the Amazon shelf break, Bay of Biscay of the western European margin; etc. The survey included the following SAR missions: ERS-1/2; Envisat and TerraSAR-X

Dynamical measurements in shallow seas from ocean colour and infrared imagery

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Loricate Choanoflagellates from the South Atlantic coastal zone (~32 S) including the description of diplotheca tricyclica sp. nov.

The biodiversity of marine heterotrophic protists is poorly known in the South Atlantic coastal zone (~32 °S) especially regarding the nanoflagellates. The presence of loricate choanoflagellates was reported for the first time in the Patos Lagoon estuary and the adjacent coastal zone. Seventeen species of eleven genera of loricate choanoflagellates were observed between October 1998 and May 2000 in fixed water samples (lugol's solution + glutaraldehyde) in a JEM 100-SX transmission electron microscope. Most species were recorded in euhaline and mixopolyhaline waters during the spring and summer, none in autumn and a few (four) in winter. The absence of choanoflagellates at the more sheltered inshore stations is due freshwater influence, and at the beach station,probably due the strong wave action. The probably cosmopolitan species Pleurasiga minima, Cosmoeca norvegica, C. ventricosa and Parvicorbicula circularis were present in spring or summer in the estuary channel and coastal area while Stephanoeca diplocostata which apparently prefers lower temperature, was recorded in winter. Calotheca alata and Campyloacantha spinifera are mainly temperate species and were present in spring. The new species Diplotheca tricyclica was recorded at the estuary channel in the summer 1999, in high salinity water.A biodiversidade de protistas heterotróficos é pouco conhecida na zona costeira do Atlântico Sul (~32 °S), especialmente dos nanoflagelados. No presente estudo, foi registrada pela primeira vez a presença de coanoflagelados loricados no estuário da Lagoa dos Patos e na zona costeira adjacente. Dezessete espécies de onze gêneros de coanoflagelados loricados foram observadas em amostras de água fixadas (solução de lugol + glutaraldeido) coletadas entre outubro de 1998 e maio de 2000, e analisadas em microscópio de transmissão JEM 100-SX. A maior parte das espécies foi registrada em águas euhalinas e mixopolihalinas durante a primavera e o verão, nenhuma no outono e poucas (quatro) no inverno. A ausência de coanoflagelados nas estações mais protegidas deve-se a influência da água doce, e na estação da praia deve-se, provavelmente, a forte ação das ondas. As espécies, provavelmente cosmopolitas, Pleurasiga minima, Cosmoeca norvegica, C. ventricosa and Parvicorbicula circularis ocorreram na primavera ou no verão no canal principal do estuário e na área costeira, enquanto Stephanoeca diplocostata, que aparentemente prefere baixas temperaturas, foi registrada no inverno. Calotheca alata e Campyloacantha spinifera são principalmente de ambientes temperados e estiveram presentes na primavera. Uma espécie nova, Diplotheca tricyclica, foi registrada na área do canal principal do estuário, no verão de 1999, em águas de alta salinidade