Design and implementation of a compact high-throughput echelle spectrometer using off-the-shelf off-axis parabolic mirrors for analysis of biological samples by LIBS (Conference Presentation)

This work presents the development of an Echelle spectrometer that is optimized for the characterization of laser-driven plasma emission of biological samples for application in smart laser surgery systems. Despite the compact (portable) and cost-efficient design of the developed spectrometer, it allows analyzing the spectrum of a plasma emitted from bone, and its surrounding soft tissues (bone marrow, muscle, and fat) in nearly the same way as a full-sized Echelle spectrometer as used in commercial laser-induced breakdown spectroscopy (LIBS) systems. Most of the commercially available Echelle spectrometers on the market use a long focal length on-axis mirror to have a reasonable F number (which defines the optical throughput of the system) and low aberration. While a long focal length requires less tilting of the mirror than a shorter focal length (the higher the tilt angle, the higher the aberration), a long focal length increases the system size and decreases sensitivity (i.e., less optical throughput). In this work, a parabolic 90o off-axis mirror with a focal length of 152.4 mm and a diameter of 50.8 mm, which leads to an F-number of 3, has been used. This low F-number provides a high optical throughput compared to other similar commercial Echelle spectrometers with F-numbers of 10 or more [1-5]. Since most of the important peaks in biological tissue are in the interval of 240 to 840 nm [6], the design was done by using off-the-shelf aluminum mirrors with a UV-enhanced coating for both collimating and focusing purposes to cover this range with sub-Angstrom resolution. Both collimating and focusing mirrors were chosen with the same radius of curvature and declination angle (opposite direction) to cancel the coma. In this antiparallel configuration, the second parabolic mirror largely eliminates the aberrations from the first one. Moreover, we positioned the Echelle grating under the condition of quasi-Littrow design to have high diffraction efficiency with an off-axis angle in the horizontal plane. A ruled reflection grating with dispersion perpendicular to that of the Echelle grating was utilized as a cross dispenser (order separator) after the Echelle grating to distinguish the overlapping diffraction harmonics. The spectrometer has been connected to a gated ICCD to measure time-resolved spectra. The developed spectrometer was installed on a 3-tier utility cart, the inducing laser (Q-switched Nd:YAG) for LIBS was placed on the middle tier, and the last tier was dedicated for calibration instruments (a NIST traceable balanced Deuterium-Halogen light source for intensity calibration, and some gas/vapor spectral lamps including Mercury-Argon, Argon, Neon, and Krypton for wavelength calibration). The portability feature of this LIBS setup provides a remarkable value for testing and characterizing different biological samples on-site. This is a great capability especially if the target sample has the potential of being contagious. This setup is meant to be used for so-called smart laser osteotomies, i.e., the osteotome will be able to identify the type of the tissue being cut through the feedback provided by LIBS [6-8]

All fiber-based LIBS feedback system for endoscopic laser surgery

There has been a particular interest to use laser-induced breakdown spectroscopy (LIBS) as a feedback mechanism for laser surgeries in the past decade 1-6. However, none of the mentioned setups 1-6 is suitable for endoscopic applications due to their bulky free-space configurations. In minimally nvasive surgeries, the major challenge is to integrate ablating laser waveguides and also all sensors inside the narrow channel of the endoscope. In this paper, we present a LIBS setup, which uses a multimode silica fiber for both delivering the inducing laser pulse and collecting the plasma emission light through the endoscope. The fiber-based LIBS setup consists of a frequency-doubled Q-switched Nd:YAG laser (Q-smart 450, Quantel, 532 nm, 5 ns, 60 mJ, 1 Hz), a cleaved large-core silica fiber (1.5 m-long, 1500 um-core, 0.39-NA, 70 mm-bending radius), and an in-house Echelle spectrometer (See Fig. 1). A 75 cm plano-convex laser line lens (Thorlabs, LA1978-YAG) was used to couple the laser beam into a multimode step-index silica fiber. Such a long focal length convex lens was used to avoid breakdown process in air. Moreover, the input face of the fiber was placed at 1 cm behind the focal point to maintain the laser power density below the damage threshold of the fiber. Two tight focusing lenses were placed in front of the fiber end face to collimate the highly divergent laser beam and refocus it onto the sample surface. The light emitted from the microplasma generated at the surface of the sample (bone and its surrounding soft tissues) was collected by the same optics and directed to the spectrometer for characterization. The performance of the developed fiber-based LIBS setup for classification of different tissues has been investigated and compared with the free-space LIBS. The feedback provided by this fiber-based LIBS setup can be used in minimally invasive laserosteotomies in order to stop the laser before causing any collateral damage to surrounding tissues. References [1] F. Yueh, H. Zheng, J.P. Singh, S. Burgess, Preliminary evaluation of laser-induced breakdown spectroscopy for tissue classification, Spectrochim. Acta B 64 (2009) 1059-1067. [2] R. Kanawade, F. Mehari, C. Knipfer, M. Rohde, K. Tangermann-Gerk, et al., Pilot study of laser induced breakdown spectroscopy for tissue differentiation by monitoring the plume created during laser surgery-An approach on a feedback Laser control mechanism, Spectrochim. Acta B 87 (2013) 175-181. [3] K. Henn, G.G. Gubaidullin, J. Bongartz, J. Wahrburg, H. Roth, et al., A spectroscopic approach to monitor the cut processing in pulsed laser osteotomy, Lasers Med. Sci. 28 (2013) 87-92. [4] H. Huang, L.-M. Yang, S. Bai, J. Liu, Smart surgical tool, J. Biomed. Opt. 20 (2015) 028001. [5] R.K. Gill, Z.J. Smith, C. Lee, S. Wachsmann-Hogiu, The effects of laser repetition rate on femtosecond laser ablation of dry bone: a thermal and LIBS study, J. Biophotonics 9 (2016) 171-180. [6] H. Abbasi, G. Rauter, R. Guzman, P.C. Cattin, A. Zam, Laser-induced breakdown spectroscopy as a potential tool for auto carbonization detection in laserosteotomy, J. Biomed. Opt. 23 (2018) 071206

Toward finding the best machine learning classifier for LIBS-based tissue differentiation

Lasers have become generally accepted devices in surgical applications, especially as a cutting tool, for cutting both soft and hard tissues including bone (laserosteotomy). It has been shown that applying lasers in osteotomy have important advantages over mechanical tools, including faster healing, more precise cut and functional cutting geometries as well as less trauma [1, 2]. However, the ability of detecting the type of tissue that being cut during surgery can extend the application and safety of laserosteotomes in practice. As a result, the laser could be stopped automatically in case of cutting a tissue that should be preserved. Authors have previously demonstrated that laser-induced breakdown spectroscopy (LIBS) is a potential candidate to differentiate surrounding soft tissue from the bone in ex vivo condition [3]. In the current study, different machine learning classifiers were examined to find the best possible method to differentiate bone from soft tissues based on LIBS data. These methods include decision tree, K Nearest Neighbor (KNN), linear and quadratic Support Vector Machine (SVM) as well as linear and quadratic discriminant analysis. All classifiers were applied on LIBS data obtained from bone, muscle, and fat tissues using an Nd:YAG laser and an Echelle spectrometer. Confusion matrix and Receiver Operating Characteristic (ROC) curve were obtained for each classifier afterwards. Moreover, in order to estimate the model's performance on new data and also to protect the model against overfitting, cross-validation was applied. All mentioned examinations were performed with MATLAB (R2017b)

Thermal and energetic consequences of nest location and breeding times in Water Pipits (Anthus spinoletta).

The thermal environment has pronounced effects on the energy costs of thermoregulation and affects an animal's allocation of energy to self-maintenance and parental care. Consequently, the selection of reproductive periods, breeding habitats and nest-sites with a favourable microclimate can be advantageous, especially for birds breeding in harsh environments. In this study on Alpine Water Pipits (Anthus spinoletta), we evaluate the importance of spatial and temporal factors on thermoregulatory costs by combining laboratory measurements of metabolic rates under various temperatures with standard operative temperatures (Te~) recorded in the field in different microhabitats. Using these measurements we estimate the thermal and energetic consequences of nest locality and timing of reproduction. Our results show: (1) In the morning, Te~ values were much higher on the east-north-east (ENE) slope of a valley than on the west-south-west (WSW) slope; in the afternoon this pattern was reversed. As a consequence, energy costs (Ehour) for thermoregulation on the ENE slope were up to 0.6 RMR (resting metabolic rate at night) lower than on the WSW slope during morning hours and about 0.8 RMR higher during afternoon hours. (2) During the incubation and nestling phases of first and second broods, total energy expenditure for thermoregulation in the daytime (Edaytime) was 0.2-0.3 RMR higher on the ENE slope than on the WSW slope. (3) Within slopes, Edaytime was lower during second broods than during first broods, with differences of 0.06-0.07 RMR during incubation and of 0.32 RMR during nestling care. These differences correspond to the flying costs of females incubating eggs (0.09 RMR) and rearing nestlings (0.25 RMR). We conclude that nest placement in relation to microclimate can improve the female's energy budget, both in terms of the total daily expenditure and its diurnal pattern. From thermal considerations alone, delaying breeding into mid-summer would be advantageous, but this advantage is probably outweighed by the reduced chances for second and replacement clutches and by the necessity to complete moult before migration

Mediolateral Damping of an Overhead Body Weight Support System Assists Stability During Treadmill Walking

Background Body weight support systems with three or more degrees of freedom (3-DoF) are permissive and safe environments that provide unloading and allow unrestricted movement in any direction. This enables training of walking and balance control at an early stage in rehabilitation. Transparent systems generate a support force vector that is near vertical at all positions in the workspace to only minimally interfere with natural movement patterns. Patients with impaired balance, however, may benefit from additional mediolateral support that can be adjusted according to their capacity. An elegant solution for providing balance support might be by rendering viscous damping along the mediolateral axis via the software controller. Before use with patients, we evaluated if control-rendered mediolateral damping evokes the desired stability enhancement in able-bodied individuals. Methods A transparent, cable-driven robotic body weight support system (FLOAT) was used to provide transparent body weight support with and without mediolateral damping to 21 able-bodied volunteers while walking at preferred gait velocity on a treadmill. Stability metrics reflecting resistance to small and large perturbations were derived from walking kinematics and compared between conditions and to free walking. Results Compared to free walking, the application of body weight support per-se resulted in gait alterations typically associated with body weight support, namely increased step length and swing phase. Frontal plane dynamic stability, measured by kinematic variability and nonlinear dynamics of the center of mass, was increased under body weight support, indicating reduced balance requirements in both damped and undamped support conditions. Adding damping to the body weight support resulted in a greater increase of frontal plane stability. Conclusion Adding mediolateral damping to 3-DoF body weight support systems is an effective method of increasing frontal plane stability during walking in able-bodied participants. Building on these results, adjustable mediolateral damping could enable therapists to select combinations of unloading and stability specifically for each patient and to adapt this in a task specific manner. This could extend the impact of transparent 3-DoF body weight support systems, enabling training of gait and active balance from an early time point onwards in the rehabilitation process for a wide range of mobility activities of daily life

A new dihydroxysterol from the marine phytoplankton Diacronema sp.

Diacronema sp. was cultured and its sterols were separated by column chromatography on silica gel. The new sterol 24-ethyl-4α-methyl-cholestane-3,20-diol (1) was characterised by NMR and MS spectrometry, as well as (22E)-24-ethyl-4α-methyl-5α-cholest-22-en-3β-ol (2) and β-sitosterol, the major components of the sterol fractions. Neither the biosynthetic origin of the new dihydroxysterol nor its role in the biochemistry of Diacronema is known.info:eu-repo/semantics/publishedVersio

Coupling rheology and segregation in granular flows

During the last fifteen years there has been a paradigm shift in the continuum modelling of granular materials; most notably with the development of rheological models, such as the μ(I) μ(I) -rheology (where μ μ is the friction and I is the inertial number), but also with significant advances in theories for particle segregation. This paper details theoretical and numerical frameworks (based on OpenFOAM) which unify these currently disconnected endeavours. Coupling the segregation with the flow, and vice versa, is not only vital for a complete theory of granular materials, but is also beneficial for developing numerical methods to handle evolving free surfaces. This general approach is based on the partially regularized incompressible μ(I) μ(I) -rheology, which is coupled to the gravity-driven segregation theory of Gray & Ancey (J. Fluid Mech., vol. 678, 2011, pp. 353–588). These advection–diffusion–segregation equations describe the evolving concentrations of the constituents, which then couple back to the variable viscosity in the incompressible Navier–Stokes equations. A novel feature of this approach is that any number of differently sized phases may be included, which may have disparate frictional properties. Further inclusion of an excess air phase, which segregates away from the granular material, then allows the complex evolution of the free surface to be captured simultaneously. Three primary coupling mechanisms are identified: (i) advection of the particle concentrations by the bulk velocity, (ii) feedback of the particle-size and/or frictional properties on the bulk flow field and (iii) influence of the shear rate, pressure, gravity, particle size and particle-size ratio on the locally evolving segregation and diffusion rates. The numerical method is extensively tested in one-way coupled computations, before the fully coupled model is compared with the discrete element method simulations of Tripathi & Khakhar (Phys. Fluids, vol. 23, 2011, 113302) and used to compute the petal-like segregation pattern that spontaneously develops in a square rotating drum

Proximate biochemical composition and mineral content of edible species from the genus Cystoseira in Portugal

Macroalgae are valuable resources for human consumption in many countries. This work reports for the first time a comparative evaluation of the nutritional properties of five edible macroalgae from the genus Cystoseira, namely C. humilis, C. tamariscifolia, C. nodicaulis, C. compressa and C. baccata. For this purpose, their proximate composition was determined in terms of moisture, ash, and total contents of protein, lipids, carbohydrates and mineral profile. Cystoseira tamariscifolia and C. baccata were the species that in general had the higher ash, protein and lipid contents, while the highest levels of moisture and total carbohydrates were detected in C. nodicaulis and C. compressa. Cystoseira species had also high amounts of minerals, especially of potassium, calcium and iron, and a favorable Na/K ratio. The present study shows that Cystoseira has a balanced nutritional composition, suitable for human consumption, and that its intake can contribute to a healthy and well-balanced diet