SN 1995ah-the first supernova observed in a Blue Compact Dwarf galaxy

We present the properties of the supernova SN 1995ah discovered in a Blue Compact Dwarf galaxy (BCD) around 10 days after the maximum. This is the first supernova event observed in a BCD. The photometric and spectroscopic data suggest that SN 1995ah is a Type II supernova and could belong to the rare Bright SNII Linear subclass, for which ~=-18.9+-0.6 at maximum light.Comment: 6 pages, late

The night-sky at the Calar Alto Observatory II: The sky at the near infrared

We present here the characterization of the night sky-brightness at the near-infrared, the telescope seeing, and the fraction of useful time at the Calar Alto observatory. For this study we have collected a large dataset comprising 7311 near-infrared images taken regularly along the last four years for the ALHAMBRA survey (J, H and Ks-bands), together with a more reduced dataset of additional near-infrared images taken for the current study. In addition we collected the information derived by the meteorological station at the observatory during the last 10 years, together with the results from the cloud sensor for the last ~2 years. We analyze the dependency of the near-infrared night sky-brightness with the airmass and the seasons, studying its origins and proposing a zenithal correction. A strong correlation is found between the night sky-brightness in the Ks-band and the air temperature, with a gradient of ~ -0.08 mag per 1 C degree. The typical (darkest) night sky-brightness in the J, H and Ks-band are 15.95 mag (16.95 mag), 13.99 mag (14.98 mag) and 12.39 mag (13.55 mag), respectively. These values show that Calar Alto is as dark in the near-infrared as most of the other astronomical astronomical sites in the world that we could compare with. Only Mauna Kea is clearly darker in the Ks-band. The typical telescope seeing at the 3.5m is ~1.0" when converted to the V-band, being only slightly larger than the atmospheric seeing measured at the same time by the seeing monitor, ~0.9". Finally we estimate the fraction of useful time based on the relative humidity, gust wind speed and presence of clouds. This fraction, ~72%, is very similar to the one derived in Paper I, based on the fraction of time when the extinction monitor is working.Comment: 15 pages, 6 figures, accepted to be published in PAS

Representing Semantified Biological Assays in the Open Research Knowledge Graph

In the biotechnology and biomedical domains, recent text mining efforts advocate for machine-interpretable, and preferably, semantified, documentation formats of laboratory processes. This includes wet-lab protocols, (in)organic materials synthesis reactions, genetic manipulations and procedures for faster computer-mediated analysis and predictions. Herein, we present our work on the representation of semantified bioassays in the Open Research Knowledge Graph (ORKG). In particular, we describe a semantification system work-in-progress to generate, automatically and quickly, the critical semantified bioassay data mass needed to foster a consistent user audience to adopt the ORKG for recording their bioassays and facilitate the organisation of research, according to FAIR principles.Comment: In Proceedings of 'The 22nd International Conference on Asia-Pacific Digital Libraries

The OpenCitations Data Model

A variety of schemas and ontologies are currently used for the machine-readable description of bibliographic entities and citations. This diversity, and the reuse of the same ontology terms with different nuances, generates inconsistencies in data. Adoption of a single data model would facilitate data integration tasks regardless of the data supplier or context application. In this paper we present the OpenCitations Data Model (OCDM), a generic data model for describing bibliographic entities and citations, developed using Semantic Web technologies. We also evaluate the effective reusability of OCDM according to ontology evaluation practices, mention existing users of OCDM, and discuss the use and impact of OCDM in the wider open science community.Comment: ISWC 2020 Conference proceeding

Analysis of the Interaction Effects in the Southern Galaxy Pair Tol1238-364 and ESO381-G009

In the context of the connection among galaxy-galaxy interaction, starbursts and nuclear activity, we present and discuss a quantitative morphological analysis based on BVR images and a detailed spectroscopic investigation of two interacting galaxies, the Seyfert 2 Tol1238-364 (IC 3639) and its companion ESO381-G009, forming a triple system with ESO381-G006. Broad-band optical photometry is complemented by Halpha imaging, which provides information about the distribution of star forming regions across the galaxies. Long-slit spectroscopic data obtained at different position angles of the slit are employed to determine the physical conditions of circumnuclear and extranuclear regions. A mixture of thermal and non-thermal ionizing radiation is found in the surroundings of the nucleus of Tol1238-364 and the energy budget supports the presence of a circumnuclear starburst.Several regions in both the galaxies show anomalous line ratios: additional ionization by shock-heating and low ionization of some extranuclear HII regions are suggested as possible explanations. An analysis of the emission-line profiles reveals the presence of a broad Halpha component in the nuclear region of Tol1238-364. Independent estimates of the star formation rates (SFR) were obtained through flux-calibrated Halpha-images and FIR emission in the four IRAS bands. Overall SFR densities have been compared with the SFR densities derived from Halpha emission in the individual regions of the galaxies sampled by long-slit spectra. In both galaxies an enhancement of the star formation activity with respect to isolated galaxies is revealed. The prevalence of starburst or nuclear activity has been examined through FIR color indices. The interaction scenario is discussed on the basis of the observed galaxy properties.Comment: Tentatively scheduled for publication in ApJS, v184 n2 October 2003 issue. A version with full resolution figures is available as unedited preprint at http://www.journals.uchicago.edu/ApJ/future.htm

First optical identification of a suprsoft X-ray source in M31

We propose the first association of an optical counterpart with a luminous supersoft X-ray source in M31, RX J0044.0+4118, observed with ROSAT in July 1991. The PSPC position is at 1.6" angular distance from a candidate nova in outburst in September of 1990. This is interesting because the incidence of classical novae among supersoft X-ray sources is an open question. The proposed optical counterpart was measured at R~17.7 in September of 1990, and it had faded to R>19.2 when it was observed again after 70 days. The light curve was too sparsely monitored for definite conclusions on the speed class of the nova. No other variable objects with V<23.5 were found in the ROSAT spatial error box. We evaluate that the probability that a classical or recurrent nova was in outburst in the ROSAT error box in the few years preceding the observation is very small, so the proposed identification is meaningful. We also show evidence that the associated supersoft X-ray source turned off in the third year after the outburst.Comment: To appear in Astronomy and Astrophysic

Evolutionary analysis implicates RNA polymerase II pausing and chromatin structure in nematode piRNA biogenesis

Piwi-interacting RNAs (piRNAs) control transposable elements widely across metazoans but have rapidly evolving biogenesis pathways. In Caenorhabditis elegans, almost all piRNA loci are found within two 3Mb clusters on Chromosome IV. Each piRNA locus possesses an upstream motif that recruits RNA polymerase II to produce a ~28 nt precursor transcript. Here, we use comparative epigenomics across nematodes to gain insight into piRNA biogenesis. We show that the piRNA upstream motif is derived from core promoter elements controlling snRNA biogenesis. We describe two alternative modes of piRNA organisation in nematodes: in C. elegans and closely related nematodes, piRNAs are clustered within repressive H3K27me3 chromatin, whilst in other species, typified by Pristionchus pacificus, piRNAs are distributed genome-wide within introns of actively transcribed genes. In both groups, piRNA production depends on downstream sequence signals associated with RNA polymerase II pausing, which synergise with the chromatin environment to control piRNA precursor transcription

Endogenous Signaling by Omega-3 Docosahexaenoic Acid-derived Mediators Sustains Homeostatic Synaptic and Circuitry Integrity

The harmony and function of the complex brain circuits and synapses are sustained mainly by excitatory and inhibitory neurotransmission, neurotrophins, gene regulation, and factors, many of which are incompletely understood. A common feature of brain circuit components, such as dendrites, synaptic membranes, and other membranes of the nervous system, is that they are richly endowed in docosahexaenoic acid (DHA), the main member of the omega-3 essential fatty acid family. DHA is avidly retained and concentrated in the nervous system and known to play a role in neuroprotection, memory, and vision. Only recently has it become apparent why the surprisingly rapid increases in free (unesterified) DHA pool size take place at the onset of seizures or brain injury. This phenomenon began to be clarified by the discovery of neuroprotectin D1 (NPD1), the first-uncovered bioactive docosanoid formed from free DHA through 15-lipoxygenase-1 (15-LOX-1). NPD1 synthesis includes, as agonists, oxidative stress and neurotrophins. The evolving concept is that DHA-derived docosanoids set in motion endogenous signaling to sustain homeostatic synaptic and circuit integrity. NPD1 is anti-inflammatory, displays inflammatory resolving activities, and induces cell survival, which is in contrast to the pro-inflammatory actions of the many of omega-6 fatty acid family members. We highlight here studies relevant to the ability of DHA to sustain neuronal function and protect synapses and circuits in the context of DHA signalolipidomics. DHA signalolipidomics comprises the integration of the cellular/tissue mechanism of DHA uptake, its distribution among cellular compartments, the organization and function of membrane domains containing DHA phospholipids, and the precise cellular and molecular events revealed by the uncovering of signaling pathways regulated by docosanoids endowed with prohomeostatic and cell survival bioactivity. Therefore, this approach offers emerging targets for prevention, pharmaceutical intervention, and clinical translation involving DHA-mediated signaling