Validation of UV-visible aerosol optical thickness retrieved from spectroradiometer measurements

Global and diffuse UV-visible solar irradiances are routinely measured since 2003 with a spectroradiometer operated by the Laboratoire d'Optique Atmosphérique (LOA) located in Villeneuve d'Ascq, France. The analysis of the direct irradiance derived by cloudless conditions enables retrieving the aerosol optical thickness (AOT) spectrum in the 330–450 nm range. The site hosts also sunphotometers from the AERONET/PHOTONS network performing routinely measurements of the AOT at several wavelengths. On one hand, comparisons between the spectroradiometer and the sunphotometer AOT at 440 nm as well as, when available, at 340 and 380 nm, show good agreement: in 2003–2005 at 440 nm the correlation coefficient, the slope and the intercept of the regression line are [0.97, 0.95, 0.025], and in 2006 at 440, 380 and 340 nm they are [0.97, 1.00, −0.013], [0.97, 0.98, −0.007], and [0.98, 0.98, −0.002] respectively. On the other hand, the AOT's spectral variations have been compared using the Angström exponents derived from AOT data at 340 and 440 nm for both instruments. The comparisons show that this parameter is difficult to retrieve accurately due to the small wavelength range and due to the weak AOT values. Thus, AOT derived at wavelengths outside the spectroradiometer range by means of an extrapolation using the Angström parameter would have large uncertainties, whereas spectroradiometer's spectral AOT could be used for direct validation of other AOT, such as those provided by satellite instruments

Reducing the debt : is it optimal to outsource an investment?

International audienceWe deal with the problem of outsourcing the debt for a big investment, according two situations: either the firm outsources both the investment (and the associated debt) and the exploitation to a private consortium, or the firm supports the debt and the investment but outsources the exploitation. We prove the existence of Stackelberg and Nash equilibria between the firm and the private consortium, in both situations. We compare the benefits of these contracts. We conclude with a study of what happens in case of incomplete information, in the sense that the risk aversion coefficient of each partner may be unknown by the other partner

Antigenicity of Recombinant Maltose Binding Protein-Mycobacterium avium subsp. paratuberculosis Fusion Proteins with and without Factor Xa Cleaving

Mycobacterium avium subsp. paratuberculosis causes Johne’s disease (JD) in ruminants. Proteomic studies have shown that M. avium subsp. paratuberculosis expresses certain proteins when exposed to in vitro physiological stress conditions similar to the conditions experienced within a host during natural infection. Such proteins are hypothesized to be ex- pressed in vivo, are recognized by the host immune system, and may be of potential use in the diagnosis of JD. In this study, 50 recombinant maltose binding protein (MBP)-M. avium subsp. paratuberculosis fusion proteins were evaluated using serum samples from sheep infected with M. avium subsp. paratuberculosis, and 29 (58%) were found to be antigenic. Among 50 fusion proteins, 10 were evaluated in MBP fusion and factor Xa-cleaved forms. A total of 31 proteins (62%) were found to be antigenic in either MBP fusion or factor Xa-cleaved forms. Antigenicity after cleavage and removal of the MBP tag was marginally enhanced

Antigenicity of Recombinant Maltose Binding Protein-Mycobacterium avium subsp. paratuberculosis Fusion Proteins with and without Factor Xa Cleaving

Mycobacterium avium subsp. paratuberculosis causes Johne’s disease (JD) in ruminants. Proteomic studies have shown that M. avium subsp. paratuberculosis expresses certain proteins when exposed to in vitro physiological stress conditions similar to the conditions experienced within a host during natural infection. Such proteins are hypothesized to be ex- pressed in vivo, are recognized by the host immune system, and may be of potential use in the diagnosis of JD. In this study, 50 recombinant maltose binding protein (MBP)-M. avium subsp. paratuberculosis fusion proteins were evaluated using serum samples from sheep infected with M. avium subsp. paratuberculosis, and 29 (58%) were found to be antigenic. Among 50 fusion proteins, 10 were evaluated in MBP fusion and factor Xa-cleaved forms. A total of 31 proteins (62%) were found to be antigenic in either MBP fusion or factor Xa-cleaved forms. Antigenicity after cleavage and removal of the MBP tag was marginally enhanced

Antigenicity of Recombinant Maltose Binding Protein-Mycobacterium avium subsp. paratuberculosis Fusion Proteins with and without Factor Xa Cleaving

Mycobacterium avium subsp. paratuberculosis causes Johne’s disease (JD) in ruminants. Proteomic studies have shown that M. avium subsp. paratuberculosis expresses certain proteins when exposed to in vitro physiological stress conditions similar to the conditions experienced within a host during natural infection. Such proteins are hypothesized to be ex- pressed in vivo, are recognized by the host immune system, and may be of potential use in the diagnosis of JD. In this study, 50 recombinant maltose binding protein (MBP)-M. avium subsp. paratuberculosis fusion proteins were evaluated using serum samples from sheep infected with M. avium subsp. paratuberculosis, and 29 (58%) were found to be antigenic. Among 50 fusion proteins, 10 were evaluated in MBP fusion and factor Xa-cleaved forms. A total of 31 proteins (62%) were found to be antigenic in either MBP fusion or factor Xa-cleaved forms. Antigenicity after cleavage and removal of the MBP tag was marginally enhanced

Transport of malic acid in the yeast Schizosaccharomyces pombe: evidence for a proton-dicarboxylate symport

The transport system for malic acid present in Schizosaccharomyces pombe cells, growing in batch culture on several corbon sources, has been studied. It was found that the diarboxylic acid carrier of S. pombe is a proton-dicarboxylate symporter that allows transport and accumulation as a function of pH with the following kinetic parameters at pH 5·0: Vmax = 0·01 nmol of total malic acids 1 mg (dry weight) of cells, 1and Km = 0·1mM total malic acid uptake (pH 5·0) was accompanied by disappearance of extracellular protons, the uptake rates of which followed Michaelis-Menten kinetics as a function of the acid concentration. The Km values, calculated as the concentrations either of anions or of undissociated acid, at various extracellular pH values, pointed to the monoanionic form as the transported species. Furthermore, accumulated free acid suffered rapid efflux after the addition of the portonophore carbonyl cyanid m-chlorophenyl hydrazone. These results suggested that the transport system was a dicarboxylateproton symporter. Growth of cells in a medium with glucose (up to 14%, w/v) and malic acid (1·5%, w/v) also resulted in proton-dicarboxylate activity, suggesting that the system, besides being constitutive, was still active at high glucose concentrations. The following dicarboxylic acids acted as competitive inhibitors of malic acid transport at pH 5·0: D- malic acid, succinic acid, fumaric acid oxaloacetic acid, -Ketoglutaric acid, maleic acid, maleic and malonic acid. In addition all of these dicarboxylic acids induced proton movements that followed MichaelisMenten kinetics. It was concluded that the malic negatively charged form (probably the monoanionic form) was transported by a proton-symport mechanism and that the carrier appeared to be a common dicarboxylat transport sysmem. The undissociated acid entered the cells slowly by simple diffusion.(undefined

Can early host responses to mycobacterial infection predict eventual disease outcomes?

Diagnostic tests used for Johne’s disease in sheep either have poor sensitivity and specificity or only detect disease in later stages of infection. Predicting which of the infected sheep are likely to become infectious later in life is currently not feasible and continues to be a major hindrance in disease control. We conducted this longitudinal study to investigate if a suite of diagnostic tests conducted in Mycobacterium avium subspecies paratuberculosis (MAP) exposed lambs at 4 months post infection can accurately predict their clinical status at 12 months post infection. We tracked cellular and humoral responses and quantity of MAP shedding for up to 12 months post challenge in 20 controls and 37 exposed sheep. Infection was defined at necropsy by tissue culture and disease spectrum by lesion type. Data were analysed using univariable and multivariable logistic regression models and a subset of variables from the earliest period post inoculation (4 months) was selected for predicting disease outcomes later on (12 months). Sensitivity and specificity of tests and their combinations in series and parallel were determined. Early elevation in faecal MAP DNA quantity and a lower interferon gamma (IFNγ) response were significantly associated with sheep becoming infectious as well as progressing to severe disease. Conversely, early low faecal MAP DNA and higher interleukin-10 responses were significantly associated with an exposed animal developing protective immunity. Combination of early elevated faecal MAP DNA or lower IFNγ response had the highest sensitivity (75%) and specificity (81%) for identifying sheep that would become infectious. Collectively, these results highlight the potential for combined test interpretation to aid in the early prediction of sheep susceptibility to MAP infection. KEYWORDS: Paratuberculosis; diagnostic tests; Mycobacterium; faecal DNA; Johne’s disease; interferon gamma.This work was supported by Meat and Livestock Australia and by Cattle Council of Australia, Sheepmeat Council of Australia and WoolProducers Australia through Animal Health Australia

Liquid cloud optical property retrieval and associated uncertainties using multi-angular and bispectral measurements of the airborne radiometer OSIRIS

In remote sensing applications, clouds are generally characterized by two properties: cloud optical thickness (COT) and effective radius of water–ice particles (Reff), as well as additionally by geometric properties when specific information is available. Most of the current operational passive remote sensing algorithms use a mono-angular bispectral method to retrieve COT and Reff. They are based on pre-computed lookup tables while assuming a homogeneous plane-parallel cloud layer. In this work, we use the formalism of the optimal estimation method, applied to airborne near-infrared high-resolution multi-angular measurements, to retrieve COT and Reff as well as the corresponding uncertainties related to the measurement errors, the non-retrieved parameters, and the cloud model assumptions. The measurements used were acquired by the airborne radiometer OSIRIS (Observing System Including PolaRization in the Solar Infrared Spectrum), developed by the Laboratoire d'Optique Atmosphérique. It provides multi-angular measurements at a resolution of tens of meters, which is very suitable for refining our knowledge of cloud properties and their high spatial variability. OSIRIS is based on the POLDER (POlarization and Directionality of the Earth's Reflectances) concept as a prototype of the future 3MI (Multi-viewing Multi-channel Multi-polarization Imager) planned to be launched on the EUMETSAT-ESA MetOp-SG platform in 2024. The approach used allows the exploitation of all the angular information available for each pixel to overcome the radiance angular effects. More consistent cloud properties with lower uncertainty compared to operational mono-directional retrieval methods (traditional bispectral method) are then obtained. The framework of the optimal estimation method also provides the possibility to estimate uncertainties of different sources. Three types of errors were evaluated: (1) errors related to measurement uncertainties, which reach 6 % and 12 % for COT and Reff, respectively, (2) errors related to an incorrect estimation of the ancillary data that remain below 0.5 %, and (3) errors related to the simplified cloud physical model assuming independent pixel approximation. We show that not considering the in-cloud heterogeneous vertical profiles and the 3D radiative transfer effects leads to an average uncertainty of 5 % and 4 % for COT and 13 % and 9 % for Reff.</p

Cirrus cloud occurrence as function of ambient relative humidity: A comparison of observations from the Southern and Northern Hemisphere midlatitudes obtained during the INCA experiment

International audienceThe occurrence frequency of cirrus clouds as function of ambient relative humidity over ice, based on in-situ observations performed during the INCA experiment, show a clear difference between the campaign carried out at Southern Hemisphere (SH) midlatitudes and the campaign carried out at Northern Hemisphere (NH) midlatitudes. At a given relative humidity above ice saturation, clouds are more frequent in the NH. At relative humidities near ice saturation, clouds defined as containing particles with sizes larger than 0.55 µm diameter and an integral number density above 0.2 cm-3 were present 70% of the time during the SH campaign, whereas clouds where present 95% of the time during the NH campaign. Using a size threshold of 1 µm diameter to define the presence of clouds result in a less frequent occurrence of 60% of the time in the SH campaign and 75% of the time in the NH campaign. The data show that the presence of particles is a common characteristic of cirrus clouds. Clouds at ice saturation defined as having crystal sizes of at least 5 µm diameter and a number density exceeding 0.001 cm-3 were present in about 80% of the time during the SH campaign, and almost 90% of the time during the NH campaign. The observations reveal a significant cloud presence fraction at humidities well below ice saturation. Local minima in the cloud presence fraction as a function of relative humidity are interpreted as systematic underestimation of cloud presence because cloud particles may become invisible to cloud probes. Based on this interpretation the data suggests that clouds in the SH form preferentially at relative humidities between 140 and 155%, whereas clouds in the NH formed at relative humidities less than 130%. A simple assumption about the probability to reach successively higher humidities in an ice supersaturated air parcel provides a model that explains the main trend of the cloud presence fraction as function of relative humidity. If adiabatic processes are assumed a cloud water content distribution can be derived from this probability model. The resulting distribution agrees well in shape compared to observations, but the observed mean cloud water content is less than expected from simply adiabatic processes

Stratospheric aerosols from the Sarychev volcano eruption in the 2009 Arctic summer

Aerosols from the Sarychev volcano eruption (Kuril Islands, northeast of Japan) were observed in the Arctic lower stratosphere a few days after the strongest SO2 injection which occurred on 15 and 16 June 2009. From the observations provided by the Infrared Atmospheric Sounding Interferometer (IASI) an estimated 0.9 Tg of sulphur dioxide was injected into the upper troposphere and lower stratosphere (UTLS). The resultant stratospheric sulphate aerosols were detected from satellites by the Optical Spectrograph and Infrared Imaging System (OSIRIS) limb sounder and by the Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) and from the surface by the Network for the Detection of Atmospheric Composition Changes (NDACC) lidar deployed at OHP (Observatoire de Haute-Provence, France). By the first week of July the aerosol plume had spread out over the entire Arctic region. The Sarychev-induced stratospheric aerosol over the Kiruna region (north of Sweden) was measured by the Stratospheric and Tropospheric Aerosol Counter (STAC) during eight balloon flights planned in August and September 2009. During this balloon campaign the Micro Radiomètre Ballon (MicroRADIBAL) and the Spectroscopie d'Absorption Lunaire pour l'Observation des Minoritaires Ozone et NOx (SALOMON) remote-sensing instruments also observed these aerosols. Aerosol concentrations returned to near-background levels by spring 2010. The effective radius, the surface area density (SAD), the aerosol extinction, and the total sulphur mass from STAC in situ measurements are enhanced with mean values in the range 0.15-0.21 μm, 5.5-14.7 μm2 cm-3, 5.5-29.5 × 10-4 km-1, and 4.9-12.6 × 10-10 kg[S] kg-1[air], respectively, between 14 km and 18 km. The observed and modelled e-folding time of sulphate aerosols from the Sarychev eruption is around 70-80 days, a value much shorter than the 12-14 months calculated for aerosols from the 1991 eruption of Mt Pinatubo. The OSIRIS stratospheric aerosol optical depth (AOD) at 750 nm is enhanced by a factor of 6, with a value of 0.02 in late July compared to 0.0035 before the eruption. The HadGEM2 and MIMOSA model outputs indicate that aerosol layers in polar region up to 14-15 km are largely modulated by stratosphere-troposphere exchange processes. The spatial extent of the Sarychev plume is well represented in the HadGEM2 model with lower altitudes of the plume being controlled by upper tropospheric troughs which displace the plume downward and upper altitudes around 18-20 km, in agreement with lidar observations. Good consistency is found between the HadGEM2 sulphur mass density and the value inferred from the STAC observations, with a maximum located about 1 km above the tropopause ranging from 1 to 2 × 10 -9 kg[S] kg-1[air], which is one order of magnitude higher than the background level. © Author(s) 2013.The authors thank the CNES balloon launching team for successful operations and the Swedish Space Corporation at Esrange. The ETHER database (CNES-INSUCNRS) and the CNES “sous-direction Ballon” are partners of the project. The StraPolEt ´ e project has been funded by the French ´ “Agence Nationale de la Recherche” (ANR-BLAN08-1-31627), the “Centre National d’Etudes Spatiales” (CNES), and the “Institut ´ Polaire Paul-Emile Victor” (IPEV). The AEROWAVE (Aerosols, Water Vapor and Electricity) and the HALOHA (HALOgen in High Altitudes) projects have been funded by the recently created French CNES-INSU Balloon Committee (so-called CSTB). We are grateful to Slimane Bekki and David Cugniet for their constructive comments about the AER-UPMC 2-D model, to Marc-Antoine Drouin for his help about the MIMOSA model, and to the LPC2E technical team for this successful campaign. Jim Haywood and Andy Jones were supported by the Joint DECC/Defra Met Office Hadley Centre Climate Programme (GA01101). IASI was developed and built under the responsibility of the Centre National d’Etudes Spatiales (CNES, France). It is flown on board the Metop ´ satellites as part of the EUMETSAT Polar System. The IASI L1 data are received through the EUMETCast near-real-time data distribution service. L. Clarisse is a postdoctoral researcher with FRS-FNRS. We acknowledge the CALIOP team for acquiring and processing data as well as the ICARE team for providing and maintaining the computational facilities to store them. Odin is a Swedish-led satellite project funded jointly by Sweden (SNSB), Canada (CSA), France (CNES), and Finland (Tekes). This study was supported by the French VOLTAIRE Labex (Laboratoire d’Excellence ANR-10-LABX-100-01) managed by the University of Orleans