Spatial and temporal patterns of Lycium carolinianum Walt., the Carolina Wolfberry, in the salt marshes of Aransas National Wildlife Refuge, Texas

Understanding the salt marsh ecosystem in the Guadalupe Estuary is needed because wetlands in this system support the endangered whooping crane (Grus americana). The marsh plant research and monitoring described herein were based in the salt marshes at Aransas National Wildlife Refuge (ANWR), which are utilized by the cranes each winter. Past research indicates that the Carolina wolfberry (Lycium carolinianum) contributes 21-52% of crane energy intake early in the wintering period (Chavez 1996). Beginning in Fall 2003, vegetation transects were sampled along an estuarine gradient at ANWR. Species diversity and composition was similar at the three sites, with all sites containing the same 6-7 common species. While Spartina alterniflora is only a minor part of this vegetation community, it dominates the few low inter-tidal, fringe areas present. Species composition exhibited little variability from Year 1 to Year 2 of the study. Densities and biomass of L. carolinianum were not significantly different between sites or years. L. carolinianum, while important to salt marsh ecology, accounts for only a small portion of the overall productivity. Based on correlation coefficients, L. carolinianum was found in association with some of the common species in the vegetation community, indicating that its growth and survival requirements are typical to the salt marshes at ANWR. Also beginning in Fall 2003, I repeatedly sampled L. carolinianum in permanent plots along the estuarine gradient. L. carolinianum exhibits strong temporal patterns. Leaf production peaked in early spring and again just prior to peak berry abundance. Flowering of L. carolinianum occurred in October and November. Peak berry abundance coincided with the cranes arrival in late October and early November. Berry production occurred in October, November, and December; berries were virtually non-existent in the marshes for the remainder of the year. Stepwise regression showed stem diameter alone was a good estimator of aboveground biomass of this species in ANWR marshes, accounting for 94% of the variability (p<0.001). Changes in aboveground biomass followed no distinct patterns in the year of monitoring, perhaps due to the woody stem of the plant. Spatial patterns in L. carolinianum were not explained by water quality parameters alone; it is suggested that soil properties may help to account for the spatial variability

The role of nutrient variability in aquatic ecosystems

The effects of nutrient input into aquatic systems has been studied frequently; typically, these studies report an increase in algal biomass and a decrease in species diversity in response to an increase of nutrients. However, it is not clear why similar aquatic communities will respond differently to nutrient additions of similar magnitudes, resulting in alternative communities. Because variance in natural ecosystems is pervasive, perhaps it is this variability that helps determine the final community. I proposed that the total amount of nutrient input and the variability of nutrient input would affect the abundances and composition of species. A natural survey was conducted to measure the variable levels of nutrients in several aquatic systems. Experimental ponds were used to test the effects of variable rates and timing of nutrient inputs upon an aquatic community; experimental treatments manipulated the total amount of nutrient input (high v. low), the rate of nutrient input (annually, monthly or weekly), the timing of the nutrient input (early v. mid- season), and the trophic status at which these treatments were imposed (mesotrophic v. eutrophic). The effects of the variability of nutrient input was at least as important as the total amount of the nutrient input. There were large impacts upon species diversity, abundances and composition. Although these effects were manifested in many trophic groups, the response to the variability was most strikingly found within the primary producers, which showed large shifts in abundance and composition

Spatial and temporal patterns of Lycium carolinianum Walt., the Carolina Wolfberry, in the salt marshes of Aransas National Wildlife Refuge, Texas

Understanding the salt marsh ecosystem in the Guadalupe Estuary is needed because wetlands in this system support the endangered whooping crane (Grus americana). The marsh plant research and monitoring described herein were based in the salt marshes at Aransas National Wildlife Refuge (ANWR), which are utilized by the cranes each winter. Past research indicates that the Carolina wolfberry (Lycium carolinianum) contributes 21-52% of crane energy intake early in the wintering period (Chavez 1996). Beginning in Fall 2003, vegetation transects were sampled along an estuarine gradient at ANWR. Species diversity and composition was similar at the three sites, with all sites containing the same 6-7 common species. While Spartina alterniflora is only a minor part of this vegetation community, it dominates the few low inter-tidal, fringe areas present. Species composition exhibited little variability from Year 1 to Year 2 of the study. Densities and biomass of L. carolinianum were not significantly different between sites or years. L. carolinianum, while important to salt marsh ecology, accounts for only a small portion of the overall productivity. Based on correlation coefficients, L. carolinianum was found in association with some of the common species in the vegetation community, indicating that its growth and survival requirements are typical to the salt marshes at ANWR. Also beginning in Fall 2003, I repeatedly sampled L. carolinianum in permanent plots along the estuarine gradient. L. carolinianum exhibits strong temporal patterns. Leaf production peaked in early spring and again just prior to peak berry abundance. Flowering of L. carolinianum occurred in October and November. Peak berry abundance coincided with the cranes arrival in late October and early November. Berry production occurred in October, November, and December; berries were virtually non-existent in the marshes for the remainder of the year. Stepwise regression showed stem diameter alone was a good estimator of aboveground biomass of this species in ANWR marshes, accounting for 94% of the variability (p<0.001). Changes in aboveground biomass followed no distinct patterns in the year of monitoring, perhaps due to the woody stem of the plant. Spatial patterns in L. carolinianum were not explained by water quality parameters alone; it is suggested that soil properties may help to account for the spatial variability

Arcobacter Species in Humans1

During an 8-year study period, Arcobacter butzleri was the fourth most common Campylobacter-like organism isolated from 67,599 stool specimens. Our observations suggest that A. butzleri displays microbiologic and clinical features similar to those of Campylobacter jejuni; however, A. butzleri is more frequently associated with a persistent, watery diarrhea

Restaurant cooking trends and increased risk for Campylobacter infection

In the United Kingdom, outbreaks of Campylobacter infection are increasingly attributed to undercooked chicken livers, yet many recipes, including those of top chefs, advocate short cooking times and serving livers pink. During 2015, we studied preferences of chefs and the public in the United Kingdom and investigated the link between liver rareness and survival of Campylobacter. We used photographs to assess chefs’ ability to identify chicken livers meeting safe cooking guidelines. To investigate the microbiological safety of livers chefs preferred to serve, we modeled Campylobacter survival in infected chicken livers cooked to various temperatures. Most chefs correctly identified safely cooked livers but overestimated the public’s preference for rareness and thus preferred to serve them more rare. We estimated that 19%-52% of livers served commercially in the United Kingdom fail to reach 70°C and that predicted Campylobacter survival rates are 48%-98%. These findings indicate that cooking trends are linked to increasing Campylobacter infections

Glucose metabolism via the Entner-Doudoroff pathway in Campylobacter: a rare trait that enhances survival and promotes biofilm formation in some isolates

Isolates of the zoonotic pathogen Campylobacter are generally considered to be unable to metabolize glucose due to lack of key glycolytic enzymes. However, the Entner-Doudoroff (ED) pathway has been identified in Campylobacter jejuni subsp. doylei and a few C. coli isolates. A systematic search for ED pathway genes in a wide range of Campylobacter isolates and in the C. jejuni/coli PubMLST database revealed that 1.7% of >6,000 genomes encoded a complete ED pathway, including both C. jejuni and C. coli from diverse clinical, environmental and animal sources. In rich media, glucose significantly enhanced stationary phase survival of a set of ED-positive C. coli isolates. Unexpectedly, glucose massively promoted floating biofilm formation in some of these ED-positive isolates. Metabolic profiling by gas chromatography–mass spectrometry revealed distinct responses to glucose in a low biofilm strain (CV1257) compared to a high biofilm strain (B13117), consistent with preferential diversion of hexose-6-phosphate to polysaccharide in B13117. We conclude that while the ED pathway is rare amongst Campylobacter isolates causing human disease (the majority of which would be of agricultural origin), some glucose-utilizing isolates exhibit specific fitness advantages, including stationary-phase survival and biofilm production, highlighting key physiological benefits of this pathway in addition to energy conservation

A Novel Campylobacter jejuni Sequence Type from a Culture-Negative Patient in The Gambia

The introduction of molecular diagnostic methods is crucial for improved understanding of the aetiology and epidemiology of bacterial infections in communities in resource poor settings. A blood sample from a 7 month old patient diagnosed with malaria in 2001 in a Gambian outpatient clinic was reported as culture negative after it was subjected to traditional bacterial culture protocols. We re-addressed the analysis of the blood sample from this case more recently (after 6.5 years in archival storage) in pilot work establishing 16S rRNA PCR in our molecular laboratory. Initial 16S rRNA PCR results confirmed the presence of bacterial DNA in the sample. 16S rRNA sequence analysis identified the organism as Campylobacter spp. In light of the molecular evidence we successfully grew the organism using appropriate culture conditions and subsequently biochemically confirmed that the isolate was Campylobacter jejuni. PCR and DNA sequencing of a set of seven C. jejuni housekeeping genes and in silico Multilocus Sequence Typing (MLST) analysis revealed that the isolate exhibits a novel sequence type (ST) of C. jejuni (ST 2928) and belongs to ST-443 clonal complex. This study demonstrates the potential for molecular tools to enhance the diagnosis of bacterial infections, which remain a major killer globally, not least in children in the developing world. Improvements in diagnostics are needed, and will be important not only for sick individuals but also for populations, where better measures of disease burden will contribute significantly to the improvement of public health policy

Risk factors for antibiotic resistance in Campylobacter spp. isolated from raw poultry meat in Switzerland

BACKGROUND: The world-wide increase of foodborne infections with antibiotic resistant pathogens is of growing concern and is designated by the World Health Organization as an emerging public health problem. Thermophilic Campylobacter have been recognised as a major cause of foodborne bacterial gastrointestinal human infections in Switzerland and in many other countries throughout the world. Poultry meat is the most common source for foodborne cases caused by Campylobacter. Because all classes of antibiotics recommended for treatment of human campylobacteriosis are also used in veterinary medicine, in view of food safety, the resistance status of Campylobacter isolated from poultry meat is of special interest. METHODS: Raw poultry meat samples were collected throughout Switzerland and Liechtenstein at retail level and examined for Campylobacter spp. One strain from each Campylobacter-positive sample was selected for susceptibility testing with the disc diffusion and the E-test method. Risk factors associated with resistance to the tested antibiotics were analysed by multiple logistic regression. RESULTS: In total, 91 Campylobacter spp. strains were isolated from 415 raw poultry meat samples. Fifty-one strains (59%) were sensitive to all tested antibiotics. Nineteen strains (22%) were resistant to a single, nine strains to two antibiotics, and eight strains showed at least three antibiotic resistances. Resistance was observed most frequently to ciprofloxacin (28.7%), tetracycline (12.6%), sulphonamide (11.8%), and ampicillin (10.3%). One multiple resistant strain exhibited resistance to five antibiotics including ciprofloxacin, tetracycline, and erythromycin. These are the most important antibiotics for treatment of human campylobacteriosis. A significant risk factor associated with multiple resistance in Campylobacter was foreign meat production compared to Swiss meat production (odds ratio = 5.7). CONCLUSION: Compared to the situation in other countries, the data of this study show a favourable resistance situation for Campylobacter strains isolated from raw poultry meat produced in Switzerland. Nevertheless, the prevalence of 19% ciprofloxacin resistant strains is of concern and has to be monitored. "Foreign production vs. Swiss production" was a significant risk factor for multiple resistance in the logistic regression model. Therefore, an adequate resistance-monitoring programme should include meat produced in Switzerland as well as imported meat samples