Organic electronics and microphysiological systems to interface, monitor, and model biology

Biological processes in the human body are regulated through complex and precise arrangements of cell structures and their interactions. In vivo models serve as the most accurate choice for biological studies to understand these processes. However, they are costly, time-consuming, and raise ethical issues. Microphysiological systems have been developed to create advanced in vitro models that mimic in vivo-like microenvironments. They are often combined with integrated sensing technologies to perform real-time measurements to gain additional information. However, conventional sensing electrodes, made of inorganic materials such as gold or platinum, differ fundamentally from biological materials. Organic bioelectronic devices made from conjugated polymers are promising alternatives for biological sensing applications and aim to improve the interconnection between abiotic electronics and biotic materials. The widespread use of these devices is partly hindered by the limited availability of materials and low-cost fabrication methods. In this thesis, we provide new tools and materials that facilitate the use of organic bioelectronic devices for in vitro sensing applications. We developed a method to pattern the conducting polymer poly(3,4-ethylenedioxythiophene) polystyrene sulfonate and to fabricate organic microelectronic devices using wax printing, filtering, and tape transfer. The method is low-cost, time-effective, and compatible with in vitro cell culture models. To achieve higher resolution, we further developed a patterning method using femtosecond laser ablation to fabricate organic electronic devices such as complementary inverters or biosensors. The method is maskless and independent of the type of conjugated polymer. Besides fabrication processes, we introduced a newly synthesized material, the semiconducting conjugated polymer p(g42T-T)-8%OH. This polymer contains hydroxylated side chains that enable surface modifications, allowing control of cell adhesion. Using the new femtosecond laser-based patterning method, we could fabricate p(g42T-T)-8%OH-based organic electrochemical transistors to monitor cell barrier formations in vitro. Microphysological systems are further dependent on precise compartmentalization to study cellular interaction. We used femtosecond laser 3D printing to develop a co-culture neurite guidance platform to control placement and interactions between different types of brain cells. In summary, the thesis provides new tools to facilitate the fabrication of organic electronic devices and microphysiological systems. This increases their accessibility and widespread use to interface, monitor, and model biological systems

Afforestation of Tropical Pasture Only Marginally Affects Ecosystem-Scale Evapotranspiration

Evapotranspiration (ET) from tropical ecosystems is a major constituent of the global land-atmosphere water flux and strongly influences the global hydrological cycle. Most previous studies of ecosystem ET have been conducted predominantly in tropical forests, and only few observations cover other tropical land-use types such as pastures, croplands, savannas or plantations. The objectives of our study were: (1) to estimate daily, monthly, and annual ET budgets in a tropical pasture and an adjacent afforestation site, (2) to assess diurnal and seasonal patterns of ET, (3) to investigate environmental controls of ET, and (4) to evaluate the soil infiltration potential. We performed eddy covariance measurements of ecosystem ET in Sardinilla (Panama) from 2007 to 2009. Daily ET (2.6±1.0mmday−1) was significantly lower in the pasture compared to the afforestation site (3.0±0.9mmday−1). The highest ET was observed during the wet-dry transition period in both ecosystems. However, differences in daily ET between sites were relatively small, particularly during the wet season. Radiation was the main environmental control of ET at both sites, however, we observed considerable seasonal variation in the strength of this control, which was stronger during the wet compared to the dry season. In 2008, total annual ET was only slightly higher for the afforestation (1114mmy−1) than the pasture site (1034mmy−1). Our results suggest that afforestation of pasture only marginally increases ecosystem-scale ET 6-8years after establishment. Differences in soil infiltration potentials between our sites seem to explain this patter

Increasing relevance of spring temperatures for Norway spruce trees in Davos, Switzerland, after the 1950s

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Effects of vernal equinox solar eclipse on temperature and wind direction in Switzerland

The vernal equinox total solar eclipse of 20 March 2015 produced a maximum occultation of 65.8–70.1 % over Switzerland during the morning hours (09:22 to 11:48 CET). Skies were generally clear over the Swiss Alps due to a persistent high-pressure band between the UK and Russia associated with a rather weak pressure gradient over the continent. To assess the effects of penumbral shading on near-surface meteorology across Switzerland, air temperature data measured at 10 min intervals at 184 MeteoSwiss weather stations were used. Wind speed and direction data were available from 165 of these stations. Additionally, six Swiss FluxNet eddy covariance flux (ECF) sites provided turbulent measurements at 20 Hz resolution. During maximum occultation, the temperature drop was up to 5.8 K at a mountain site where cold air can pool in a topographic depression. The bootstrapped average of the maximum temperature drops of all 184 MeteoSwiss sites during the solar eclipse was 1.51 ± 0.02 K (mean ± SE). A detailed comparison with literature values since 1834 showed a temperature decrease of 2.6 ± 1.7 K (average of all reports), with extreme values up to 11 K. On fair weather days under weak larger-scale pressure gradients, local thermo-topographic wind systems develop that are driven by small-scale pressure and temperature gradients. At one ECF site, the penumbral shading delayed the morning transition from down-valley to up-valley wind conditions. At another site, it prevented this transition from occurring at all. Data from the 165 MeteoSwiss sites measuring wind direction did not show a consistent pattern of wind direction response to the passing of the penumbral shadow. These results suggest that the local topographic setting had an important influence on the temperature drop and the wind flow patterns during the eclipse. A significant cyclonic effect of the passing penumbral shadow was found in the elevation range ≈ 1700–2700 m a. s. l., but not at lower elevations of the Swiss Plateau. This contrasts with an earlier theory that the anticyclonic outflow should reach as far as ≈ 2400 km from the center of the eclipse, which would have included all of Switzerland during the 2015 eclipse. Thus, measurable effects of penumbral shading on the local wind system could be even found at ≈ 2000 km from the path of the eclipse (that is, Switzerland during the 2015 eclipse), and our results tend to lend support to a newer theory that the anticyclonic cold-air outflow from the center of the eclipse only extends ≈ 1600 km outwards, with cyclonic flow beyond that distance.ISSN:1680-7375ISSN:1680-736

3D-Printed Soft Lithography for Complex Compartmentalized Microfluidic Neural Devices.

Compartmentalized microfluidic platforms are an invaluable tool in neuroscience research. However, harnessing the full potential of this technology remains hindered by the lack of a simple fabrication approach for the creation of intricate device architectures with high-aspect ratio features. Here, a hybrid additive manufacturing approach is presented for the fabrication of open-well compartmentalized neural devices that provides larger freedom of device design, removes the need for manual postprocessing, and allows an increase in the biocompatibility of the system. Suitability of the method for multimaterial integration allows to tailor the device architecture for the long-term maintenance of healthy human stem-cell derived neurons and astrocytes, spanning at least 40 days. Leveraging fast-prototyping capabilities at both micro and macroscale, a proof-of-principle human in vitro model of the nigrostriatal pathway is created. By presenting a route for novel materials and unique architectures in microfluidic systems, the method provides new possibilities in biological research beyond neuroscience applications

Increasing relevance of spring temperatures for Norway spruce trees in Davos, Switzerland, after the 1950s

Key message : Relevance of spring temperatures for tree-ring growth steadily increased since 1950s. Closely linked tree-ring growth and net CO 2 exchange driven by spring temperatures. Abstract: We investigated long-term (over 100years) tree-ring width (TRW) variabilities as well as short-term (10years) variations in net ecosystem productivity (NEP) in response to climate to assess the driving factors for stem growth of Norway spruce in a subalpine forest at Davos in Switzerland. A tree-ring width index (TRWi) chronology for the period from 1750 to 2006 was constructed and linked with climate data from 1876 to 2006, and with NEP available for the period from 1997 to 2006. Based on TRWi, we found that only two out of the 257years exhibited extreme negative TRWi, compared to 29years with extreme positive anomalies, observed mainly in recent decades. Annual temperature, annual precipitation, as well as autumn and winter temperature signals were well preserved in the TRWi chronology over the last 130years. Spring temperatures became increasingly relevant for TRWi, explaining less than 1% of the variation in TRWi for the period from 1876 to 2006, but 8% for the period from 1950 to 2006 (p=0.032), and even 47% for 1997-2006 (p=0.028). We also observed a strong positive relationship between annual TRWi and annual NEP (r=0.661; p=0.037), both strongly related to spring temperatures (r=0.687 and r=0.678 for TRWi and NEP, respectively; p=0.028; p=0.032). Moreover, we found strong links between monthly NEP of March and annual TRWi (r=0.912; p=0.0001), both related to March temperatures (r=0.767, p=0.010 and r=0.724, p=0.018, respectively). Thus, under future climate warming, we expect stem growth of these subalpine trees and also ecosystem carbon (C) sequestration to increase, as long as water does not become a limiting factor

Stomatal response to decreased relative humidity constrains the acceleration of terrestrial evapotranspiration

Terrestrial evapotranspiration (ET) is thermodynamically expected to increase with increasing atmospheric temperature; however, the actual constraints on the intensification of ET remain uncertain due to a lack of direct observations. Based on the FLUXNET2015 Dataset, we found that relative humidity (RH) is a more important driver of ET than temperature. While actual ET decrease at reduced RH, potential ET increases, consistently with the complementary relationship (CR) framework stating that the fraction of energy not used for actual ET is dissipated as increased sensible heat flux that in turn increases potential ET. In this study, we proposed an improved CR formulation requiring no parameter calibration and assessed its reliability in estimating ET both at site-level with the FLUXNET2015 Dataset and at basin-level. Using the ERA-Interim meteorological dataset for 1979-2017 to calculate ET, we found that the global terrestrial ET showed an increasing trend until 1998, while the trend started to decline afterwards. Such decline was largely associated with a reduced RH, inducing water stress conditions that triggered stomatal closure to conserve water. For the first time, this study quantified the global-scale implications of changes in RH on terrestrial ET, indicating that the temperature-driven acceleration of the terrestrial water cycle will be likely constrained by terrestrial vegetation feedbacks.Peer reviewe

Mapping the spatial distribution of NO2 with in situ and remote sensing instruments during the Munich NO2 imaging campaign

We present results from the Munich Nitrogen dioxide (NO2) Imaging Campaign (MuNIC), where NO2 near-surface concentrations (NSCs) and vertical column densities (VCDs) were measured with stationary, mobile, and airborne in situ and remote sensing instruments in Munich, Germany. The most intensive day of the campaign was 7 July 2016, when the NO2 VCD field was mapped with the Airborne Prism Experiment (APEX) imaging spectrometer. The spatial distribution of APEX VCDs was rather smooth, with a horizontal gradient between lower values upwind and higher values downwind of the city center. The NO2 map had no pronounced source signatures except for the plumes of two combined heat and power (CHP) plants. The APEX VCDs have a fair correlation with mobile multi-axis differential optical absorption spectroscopy (MAX-DOAS) observations from two vehicles conducted on the same afternoon (r=0.55). In contrast to the VCDs, mobile NSC measurements revealed high spatial and temporal variability along the roads, with the highest values in congested areas and tunnels. The NOx emissions of the two CHP plants were estimated from the APEX observations using a mass-balance approach. The NOx emission estimates are consistent with CO2 emissions determined from two ground-based Fourier transform infrared (FTIR) instruments operated near one CHP plant. The estimates are higher than the reported emissions but are probably overestimated because the uncertainties are large, as conditions were unstable and convective with low and highly variable wind speeds. Under such conditions, the application of mass-balance approaches is problematic because they assume steady-state conditions. We conclude that airborne imaging spectrometers are well suited for mapping the spatial distribution of NO2 VCDs over large areas. The emission plumes of point sources can be detected in the APEX observations, but accurate flow fields are essential for estimating emissions with sufficient accuracy. The application of airborne imaging spectrometers for studying NSCs is less straightforward and requires us to account for the non-trivial relationship between VCDs and NSCs

Biodiversity-stability relationships strengthen over time in a long-term grassland experiment.

Numerous studies have demonstrated that biodiversity drives ecosystem functioning, yet how biodiversity loss alters ecosystems functioning and stability in the long-term lacks experimental evidence. We report temporal effects of species richness on community productivity, stability, species asynchrony, and complementarity, and how the relationships among them change over 17 years in a grassland biodiversity experiment. Productivity declined more rapidly in less diverse communities resulting in temporally strengthening positive effects of richness on productivity, complementarity, and stability. In later years asynchrony played a more important role in increasing community stability as the negative effect of richness on population stability diminished. Only during later years did species complementarity relate to species asynchrony. These results show that species complementarity and asynchrony can take more than a decade to develop strong stabilizing effects on ecosystem functioning in diverse plant communities. Thus, the mechanisms stabilizing ecosystem functioning change with community age

Biodiversity–stability relationships strengthen over time in a long-term grassland experiment

Numerous studies have demonstrated that biodiversity drives ecosystem functioning, yet how biodiversity loss alters ecosystems functioning and stability in the long-term lacks experimental evidence. We report temporal effects of species richness on community productivity, stability, species asynchrony, and complementarity, and how the relationships among them change over 17 years in a grassland biodiversity experiment. Productivity declined more rapidly in less diverse communities resulting in temporally strengthening positive effects of richness on productivity, complementarity, and stability. In later years asynchrony played a more important role in increasing community stability as the negative effect of richness on population stability diminished. Only during later years did species complementarity relate to species asynchrony. These results show that species complementarity and asynchrony can take more than a decade to develop strong stabilizing effects on ecosystem functioning in diverse plant communities. Thus, the mechanisms stabilizing ecosystem functioning change with community age