Ectoparasite Community Structure of Two Bats (Myotis lucifugus and M. septentrionalis) from the Maritimes of Canada

Prevalence of bat ectoparasites on sympatric Myotis lucifugus and M. septentrionalis was quantitatively characterized in Nova Scotia and New Brunswick by making systematic collections at swarming sites. Six species of ectoparasite were recorded, including Myodopsylla insignis, Spinturnix americanus, Cimex adjunctus, Macronyssu scrosbyi, Androlaelap scasalis, and an unknown species of the genus Acanthophthirius. Male M. lucifugus and M. septentrionalis had similar prevalence of any ectoparasite (22% and 23%, resp.). Female M. lucifugus and M. septentrionalis had 2-3 times higher prevalence than did conspecific males (68% and 44%, resp.). Prevalence of infection of both genders of young of the year was not different from one another and the highest prevalence of any ectoparasite (M. lucifugus 64%, M. septentrionalis 72%) among all bat groups. Ectoparasite prevalence and intensity varied positively with roost group size and negatively with grooming efficacy and energy budgets, suggesting that these variables may be important in ectoparasite community structure

A Scale-Explicit Framework for Conceptualizing the Environmental Impacts of Agricultural Land Use Changes

Demand for locally-produced food is growing in areas outside traditionally dominant agricultural regions due to concerns over food safety, quality, and sovereignty; rural livelihoods; and environmental integrity. Strategies for meeting this demand rely upon agricultural land use change, in various forms of either intensification or extensification (converting non-agricultural land, including native landforms, to agricultural use). The nature and extent of the impacts of these changes on non-food-provisioning ecosystem services are determined by a complex suite of scale-dependent interactions among farming practices, site-specific characteristics, and the ecosystem services under consideration. Ecosystem modeling strategies which honor such complexity are often impenetrable by non-experts, resulting in a prevalent conceptual gap between ecosystem sciences and the field of sustainable agriculture. Referencing heavily forested New England as an example, we present a conceptual framework designed to synthesize and convey understanding of the scale- and landscape-dependent nature of the relationship between agriculture and various ecosystem services. By accounting for the total impact of multiple disturbances across a landscape while considering the effects of scale, the framework is intended to stimulate and support the collaborative efforts of land managers, scientists, citizen stakeholders, and policy makers as they address the challenges of expanding local agriculture

Genome-wide SNP identification in Fraxinus linking genetic characteristics to tolerance of Agrilus planipennis

Ash (Fraxinus spp.) is one of the most widely distributed tree genera in North America. Populations of ash in the United States and Canada have been decimated by the introduced pest Agrilus planipennis (Coleoptera: Buprestidae; emerald ash borer), having negative impacts on both forest ecosystems and economic interests. The majority of trees succumb to attack by A. planipennis, but some trees have been found to be tolerant to infestation despite years of exposure. Restriction site-associated DNA (RAD) sequencing was used to sequence ash individuals, both tolerant and susceptible to A. planipennis attack, in order to identify single nucleotide polymorphism (SNP) patterns related to tolerance and health declines. de novo SNPs were called using SAMtools and, after filtering criteria were implemented, a set of 17,807 SNPs were generated. Principal component analysis (PCA) of SNPs aligned individual trees into clusters related to geography; however, five tolerant trees clustered together despite geographic location. A subset of 32 outlier SNPs identified within this group, as well as a subset of 17 SNPs identified based on vigor rating, are potential candidates for the selection of host tolerance. Understanding the mechanisms of host tolerance through genome-wide association has the potential to restore populations with cultivars that are able to withstand A. planipennis infestation. This study was successful in using RAD-sequencing in order to identify SNPs that could contribute to tolerance of A. planipennis. This was a first step toward uncovering the genetic basis for host tolerance to A. planipennis. Future studies are needed to identify the functionality of the loci where these SNPs occur and how they may be related to tolerance of A. planipennis attack

Improved modelling of helium and tritium production for spallation targets

Reliable predictions of light charged particle production in spallation reactions are important to correctly assess gas production in spallation targets. In particular, the helium production yield is important for assessing damage in the window separating the accelerator vacuum from a spallation target, and tritium is a major contributor to the target radioactivity. Up to now, the models available in the MCNPX transport code, including the widely used default option Bertini-Dresner and the INCL4.2-ABLA combination of models, were not able to correctly predict light charged particle yields. The work done recently on both the intranuclear cascade model INCL4, in which cluster emission through a coalescence process has been introduced, and on the de-excitation model ABLA allows correcting these deficiencies. This paper shows that the coalescence emission plays an important role in the tritium and $^3He$ production and that the combination of the newly developed versions of the codes, INCL4.5-ABLA07, now lead to good predictions of both helium and tritium cross sections over a wide incident energy range. Comparisons with other available models are also presented.Comment: 6 pages, 9 figure

First records of Lasiurus cinereus and L. borealis (Chiroptera: Vespertilionidae) on Cape Breton Island, Nova Scotia, Canada

Publisher's Version/PDFIn August 2012, a Lasiurus cinereus (Hoary Bat) and 2 Lasiurus borealis (Eastern Red Bat) were netted near Donkin, Cape Breton Island, NS, Canada. Acoustic studies showed the presence of Hoary Bats on at least 3 nights and Eastern Red Bats on at least 16 nights, over a 32-night-long survey starting on 21 August 2012. These records are the first for both species on Cape Breton Island, and significantly extend the known distribution of Eastern Red Bats.</p

Caliciopsis moriondi, a new species for a fungus long confused with the pine pathogen C. pinea

Figure S1. One of the most parsimonious trees from EF1-α sequence datasets. Data type: Alignment of genomic sequences. Explanation note: One of the most parsimonious trees from EF1-α gene sequence datasets is shown (length = 66, CI = 0.9999, RI = 0.9998, RC = 0.9988, HI = 0.9888). The MP and Bayesian posterior probability are indicated next to the branches. C. pseudotsugae and C. orientalis are used as outgroup. This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/).Figure S2. One of the most parsimonious trees from Bt1 sequence datasets. Data type: Alignment of genomic sequences. Explanation note: One of the most parsimonious trees from Bt1 sequence datasets is shown (CI = 0.9268, RI = 0.9840, RC = 0.936428, HI = 0.912039). The MP and Bayesian posterior probability are indicated next to the branches. C. pseudotsugae and C. orientalis are used as outgroup. This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/).The genus Caliciopsis (Eurotiomycetes, Coryneliales) includes saprobic and plant pathogenic species. Caliciopsis canker is caused by Caliciopsis pinea Peck, a species first reported in the 19th century in North America. In recent years, increasing numbers of outbreaks of Caliciopsis canker have been reported on different Pinus spp. in the eastern USA. In Europe, the disease has only occasionally been reported causing cankers, mostly on Pinus radiata in stressed plantations. The aim of this study was to clarify the taxonomy of Caliciopsis specimens collected from infected Pinus spp. in Europe and North America using an integrative approach, combining morphology and phylogenetic analyses of three loci. The pathogenicity of the fungus was also considered. Two distinct groups were evident, based on morphology and multilocus phylogenetic analyses. These represent the known pathogen Caliciopsis pinea that occurs in North America and a morphologically similar, but phylogenetically distinct, species described here as Caliciopsis moriondi sp. nov., found in Europe and at least one location in eastern North America. Caliciopsis moriondi differs from C. pinea in various morphological features including the length of the ascomata, as well as their distribution on the stromata.Horizon 2020 Programme for Research & Innovationhttps://mycokeys.pensoft.netpm2020Forestry and Agricultural Biotechnology Institute (FABI

4Pipe4-A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information

This work was fully supported by projects SOBREIRO/0036/2009 (under the framework of the Cork Oak ESTs Consortium), PTDC/BIA-BEC/098783/2008 and PTDC/AGR-GPL/119943/2010 from Fundação para a Ciência e Tecnologia (FCT) – Portugal. F. Pina-Martins was funded by FCT grant SFRH/BD/51411/2011, under the PhD program “Biology and Ecology of Global Changes”, Univ. Aveiro & Univ. Lisbon, Portugal. D. Batista was funded by FCT grant SFRH/BPD/104629/2014

The relation between smokeless tobacco and cancer in Northern Europe and North America. A commentary on differences between the conclusions reached by two recent reviews

<p>Abstract</p> <p>Background</p> <p>Smokeless tobacco is an alternative for smokers who want to quit but require nicotine. Reliable evidence on its effects is needed. Boffetta et al. and ourselves recently reviewed the evidence on cancer, based on Scandinavian and US studies. Boffetta et al. claimed a significant 60–80% increase for oropharyngeal, oesophageal and pancreatic cancer, and a non-significant 20% increase for lung cancer, data for other cancers being "too sparse". We found increases less than 15% for oesophageal, pancreatic and lung cancer, and a significant 36% increase for oropharyngeal cancer, which disappeared in recent studies. We found no association with stomach, bladder and all cancers combined, using data as extensive as that for oesophageal, pancreatic and lung cancer. We explain these differences.</p> <p>Methods</p> <p>For those cancers Boffetta et al. considered, we compared the methods, studies and risk estimates used in the two reviews.</p> <p>Results</p> <p>One major reason for the difference is our more consistent approach in choosing between study-specific never smoker and combined smoker/non-smoker estimates. Another is our use of derived as well as published estimates. We included more studies, and avoided estimates for data subsets. Boffetta et al. also included some clearly biased or not smoking-adjusted estimates. For pancreatic cancer, their review included significantly increased never smoker estimates in one study and combined smoker/non-smoker estimates in another, omitting a combined estimate in the first study and a never smoker estimate in the second showing no increase. For oesophageal cancer, never smoker results from one study showing a marked increase for squamous cell carcinoma were included, but corresponding results for adenocarcinoma and combined smoker/non-smoker results for both cell types showing no increase were excluded. For oropharyngeal cancer, Boffetta et al. included a markedly elevated estimate that was not smoking-adjusted, and overlooked the lack of association in recent studies.</p> <p>Conclusion</p> <p>When conducting meta-analyses, all relevant data should be used, with clear rules governing the choice between alternative estimates. A systematic meta-analysis using pre-defined procedures and all relevant data gives a lower estimate of cancer risk from smokeless tobacco (probably 1–2% of that from smoking) than does the previous review by Boffetta et al.</p

Genera of Phytopathogenic Fungi: GOPHY 4

This paper is the fourth contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information about the pathology, distribution, hosts and disease symptoms, as well as DNA barcodes for the taxa covered. Moreover, 12 whole-genome sequences for the type or new species in the treated genera are provided. The fourth paper in the GOPHY series covers 19 genera of phytopathogenic fungi and their relatives, including Ascochyta, Cadophora, Celoporthe, Cercospora, Coleophoma, Cytospora, Dendrostoma, Didymella, Endothia, Heterophaeomoniella, Leptosphaerulina, Melampsora, Nigrospora, Pezicula, Phaeomoniella, Pseudocercospora, Pteridopassalora, Zymoseptoria, and one genus of oomycetes, Phytophthora. This study includes two new genera, 30 new species, five new combinations, and 43 typifications of older names.The study of Ascochyta, Didymella and Leptosphaerulina were supported by the National Natural Science Foundation of China (31750001) and the National Science and Technology Fundamental Resources Investigation Program of China (MOST: 2021FY100900). The study of the genus Phytophthora was supported by the Project Phytophthora Research Centre Reg. No. CZ.02.1.01/0.0/0.0/15_003/000 0453 cofinanced by the European Regional Development Fund. ShuaiFei Chen acknowledges the National Key R&D Program of China (ChinaSouth Africa Forestry Joint Research Centre Project; 2018YFE0120900) for financial support. Mounes Bakhshi and Rasoul Zare gratefully acknowledge the Iran National Science Foundation (INSF), and Research Deputy of the Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization (AREEO), for financial support. The study of the genera Pseudocercospora and Pteridopassalora were partially supported by JSPS KAKENHI Grant Numbers JP20K06146 to Chiharu Nakashima