Directed Explicit Model Checking with HSF-SPIN

We present the explicit state model checker HSF-SPIN which is based on the model checker SPIN and its Promela modeling language. HSF-SPIN incorporates directed search algorithms for checking safety and a large class of LTL-specified liveness properties. We start off from the A* algorithm and define heuristics to accelerate the search into the direction of a specified failure situation. Next we propose an improved nested depth-first search algorithm that exploits the structure of Promela Never-Claims. As a result of both improvements, counterexamples will be shorter and the explored part of the state space will be smaller than with classical approaches, allowing to analyze larger state spaces. We evaluate the impact of the new heuristics and algorithms on a set of protocol models, some of which are real-world industrial protocols

Tracing the early development of harmful algal blooms with the aid of Lagrangian coherent structures

Several theories have been proposed to explain the development of harmful algal blooms (HABs) produced by the toxic dinoflagellate \emph{Karenia brevis} on the West Florida Shelf. However, because the early stages of HAB development are usually not detected, these theories have been so far very difficult to verify. In this paper we employ simulated \emph{Lagrangian coherent structures} (LCSs) to trace the early location of a HAB in late 2004 before it was transported to an area where it could be detected by satellite imagery, and then we make use of a population dynamics model to infer the factors that may have led to its development. The LCSs, which are computed based on a surface flow description provided by an ocean circulation model, delineate past and future histories of boundaries of passively advected fluid domains. The population dynamics model determines nitrogen in two components, nutrients and phytoplankton, which are assumed to be passively advected by the simulated surface currents. Two nearshore nutrient sources are identified for the HAB whose evolution is found to be strongly tied to the simulated LCSs. While one nutrient source can be associated with a coastal upwelling event, the other is seen to be produced by river runoff, which provides support to a theory of HAB development that considers nutrient loading into coastal waters produced by human activities as a critical element. Our results show that the use of simulated LCSs and a population dynamics model can greatly enhance our understanding of the early stages of the development of HABs.Comment: Submitted to JGR-Ocean

Involvement of the hypothalamic-pituitary-thyroid axis and its interaction with the hypothalamic-pituitary-adrenal axis in the ontogeny of avian thermoregulation: a review

The emergence of thermoregulation in avian species is a complex matter in which neural as well as hormonal processes are involved. In a previous paper, the neural aspects of primary avian thermoregulation were discussed. In this paper the role of the hypothalamus-pituitary-thyroid axis (HPT-axis) and the hypothalamus-pituitary-adrenal axis (HPA-axis) in the ontogeny of avian thermoregulation is evaluated. The regulatory mechanisms and different important hormones of both axes, which have stimulatory or inhibitory effects, are discussed. Because the onset of functionality of the thermoregulatory system is of great interest, the ontogeny and functionality of the hormonal axes are clarified. There is a great difference between precocial and altricial birds in hormonal events as well as in neural processes which are involved in the emergence of thermoregulation. In precocial avian species the HPT-axis becomes functional during the mid- to late embryonic period while the same axis only becomes fully functional during the first week post-hatch in altricial avian species. As early as the sixties, the emergence of homeothermy in chickens was investigated. It was concluded that the thyroid gland plays an important role in the thermoregulatory mechanisms of newly hatched chicks. More recent studies however were not able to show any direct effect of the thyroid hormones on the thermoregulation of day-old chicks, although blocking the conversion of T4 to T3 caused a decrease in body temperature in young chicks. Thyrotropin releasing hormone (TRH) is known to act in thermoregulation in mammals and several authors have found an effect of TRH on the metabolism of young and older chicks. However, the exact mechanism still remains unclear. Because the HPT- and the HPA-axis show close relationships, the role of the HPA-axis in the ontogeny of thermoregulation is also taken into consideration in this review. In mammals as well as in birds, corticotropin releasing hormone (CRH) is involved in the primary thermoregulation. We conclude that the HPT-axis has an important role in the ontogeny of avian thermoregulation. The exact role of the HPA-axis remains largely unclear although at least CRH is definitely of some importance

Evolving a DSL implementation

Domain Specific Languages (DSLs) are small languages designed for use in a specific domain. DSLs typically evolve quite radically throughout their lifetime, but current DSL implementation approaches are often clumsy in the face of such evolution. In this paper I present a case study of an DSL evolving in its syntax, semantics, and robustness, implemented in the Converge language. This shows how real-world DSL implementations can evolve along with changing requirements

Effect of Hydrodynamic Force on Microcantilever Vibrations: Applications to Liquid-Phase Chemical Sensing

At the microscale, cantilever vibrations depend not only on the microstructure’s properties and geometry but also on the properties of the surrounding medium. In fact, when a microcantilever vibrates in a fluid, the fluid offers resistance to the motion of the beam. The study of the influence of the hydrodynamic force on the microcantilever’s vibrational spectrum can be used to either (1) optimize the use of microcantilevers for chemical detection in liquid media or (2) extract the mechanical properties of the fluid. The classical method for application (1) in gas is to operate the microcantilever in the dynamic transverse bending mode for chemical detection. However, the performance of microcantilevers excited in this standard out-of-plane dynamic mode drastically decreases in viscous liquid media. When immersed in liquids, in order to limit the decrease of both the resonant frequency and the quality factor, and improve sensitivity in sensing applications, alternative vibration modes that primarily shear the fluid (rather than involving motion normal to the fluid/beam interface) have been studied and tested: these include in-plane vibration modes (lateral bending mode and elongation mode). For application (2), the classical method to measure the rheological properties of fluids is to use a rheometer. However, such systems require sampling (no in-situ measurements) and a relatively large sample volume (a few milliliters). Moreover, the frequency range is limited to low frequencies (less than 200Hz). To overcome the limitations of this classical method, an alternative method based on the use of silicon microcantilevers is presented. The method, which is based on the use of analytical equations for the hydrodynamic force, permits the measurement of the complex shear modulus of viscoelastic fluids over a wide frequency range

The Asymmetric Thick Disk: A Star Count and Kinematic Analysis. II The Kinematics

We report a kinematic signature associated with the observed asymmetry in the distribution of thick disk/inner halo stars interior to the Solar circle described in Paper I. In that paper we found a statistically significant excess (20% to 25 %) of stars in quadrant I (l ~ 20 deg to 55 deg) both above and below the plane (b ~ +/- 25 deg to +/- 45 deg) compared to the complementary region in quadrant IV. We have measured Doppler velocities for 741 stars, selected according to the same magnitude and color criteria, in the direction of the asymmetry and in the corresponding fields in quadrant IV. We have also determined spectral types and metallicities measured from the same spectra. We not only find an asymmetric distribution in the V_LSR velocities for the stars in the two regions, but the angular rate of rotation, w, for the stars in quadrant I reveals a slower effective rotation rate compared to the corresponding quadrant IV stars. We use our [Fe/H] measurements to separate the stars into the three primary population groups, halo, thick disk, and disk, and conclude that it is primarily the thick disk stars that show the slower rotation in quadrant I. A solution for the radial, tangential and vertical components of the V_LSR velocities, reveals a significant lag of ~ 80 to 90 km/s in the direction of Galactic rotation for the thick disk stars in quadrant I, while in quadrant IV, the same population has only a ~ 20 km/s lag. The results reported here support a rotational lag among the thick disk stars due to a gravitational interaction with the bar as the most likely explanation for the asymmetry in both the star counts and the kinematics. The affected thick disk stars, however, may be associated with the recently discovered Canis Major debris stream or a similar merger event (abridged).Comment: Accepted for publication in the Astronomical Journa

Influence of Fluid-Structure Interaction on Microcantilever Vibrations: Applications to Rheological Fluid Measurement and Chemical Detection

At the microscale, cantilever vibrations depend not only on the microstructure’s properties and geometry but also on the properties of the surrounding medium. In fact, when a microcantilever vibrates in a fluid, the fluid offers resistance to the motion of the beam. The study of the influence of the hydrodynamic force on the microcantilever’s vibrational spectrum can be used to either (1) optimize the use of microcantilevers for chemical detection in liquid media or (2) extract the mechanical properties of the fluid. The classical method for application (1) in gas is to operate the microcantilever in the dynamic transverse bending mode for chemical detection. However, the performance of microcantilevers excited in this standard out-of-plane dynamic mode drastically decreases in viscous liquid media. When immersed in liquids, in order to limit the decrease of both the resonant frequency and the quality factor, alternative vibration modes that primarily shear the fluid (rather than involving motion normal to the fluid/beam interface) have been studied and tested: these include inplane vibration modes (lateral bending mode and elongation mode). For application (2), the classical method to measure the rheological properties of fluids is to use a rheometer. To overcome the limitations of this classical method, an alternative method based on the use of silicon microcantilevers is presented. The method, which is based on the use of analytical equations for the hydrodynamic force, permits the measurement of the complex shear modulus of viscoelastic fluids over a wide frequency range

Effect of Aqueous Ozone on the NF-κB System

Ozone has been proposed as an alternative oral antiseptic in dentistry, due to its antimicrobial power reported for gaseous and aqueous forms, the latter showing a high biocompatibility with mammalian cells. New therapeutic strategies for the treatment of periodontal disease and apical periodontitis should consider not only antibacterial effects, but also their influence on the host immune response. Therefore, our aim was to investigate the effect of aqueous ozone on the NF-κB system, a paradigm for inflammationassociated signaling/transcription. We showed that NF-κB activity in oral cells stimulated with TNF, and in periodontal ligament tissue from root surfaces of periodontally damaged teeth, was inhibited following incubation with ozonized medium. Under this treatment, IκBalpah proteolysis, cytokine expression, and κB-dependent transcription were prevented. Specific ozonized amino acids were shown to represent major inhibitory components of ozonized medium. In summary, our study establishes a condition under which aqueous ozone exerts inhibitory effects on the NF-κB system, suggesting that it has an antiinflammatory capacity

The growth and carcass and meat characteristics of pigs raised in a free-range or conventional housing system

The growth performance and the carcass and physical and chemical characteristics of the meat of 24 Landrace X Large White pigs were compared when reared under a free-range or a conventional housing system. The free-range pigs had lower feed intakes and slower growth rates than the conventionally housed pigs. The free-range pigs also had a lower P2 fat depth and therefore yielded a carcass with a higher percentage lean meat. Housing systems had no effect on the weight distribution of the commercial cuts (as a percentage of cold carcass weight). The meat from the free-range pigs was slightly more reddish in colour, but apart from that housing systems had no effect on the water-holding capacity (WHC) of the meat, its initial pH (pH45) or its final pH (pH24). The meat from the free-range pigs had the same shear force (WBS) values as those of the conventionally housed pigs. Housing systems had an influence on the fatty acid composition. Stearic acid (C18:0) was significantly lower in the meat of the free-range pigs than that of the conventionally housed pigs while linoleic acid (C18:2n-6) and polyunsaturated fatty acid (PUFA) concentrations were significantly higher. However, the moisture, fat, protein and ash contents as well as the mineral composition in the meat were unaffected by housing systems. It could be concluded that pigs raised in a conventional housing system produced meat with similar quality characteristics to that of pigs raised in a free-range housing system. Keywords: Free-range, Housing systems, Growth performance, Carcass yield, Physical quality, Chemical composition South African Journal of Animal Science Vol.33(3) 2003:166-17