One More Step Towards Well-Composedness of Cell Complexes over nD Pictures

An nD pure regular cell complex K is weakly well-composed (wWC) if, for each vertex v of K, the set of n-cells incident to v is face-connected. In previous work we proved that if an nD picture I is digitally well composed (DWC) then the cubical complex Q(I) associated to I is wWC. If I is not DWC, we proposed a combinatorial algorithm to “locally repair” Q(I) obtaining an nD pure simplicial complex PS(I) homotopy equivalent to Q(I) which is always wWC. In this paper we give a combinatorial procedure to compute a simplicial complex PS(¯I) which decomposes the complement space of |PS(I)| and prove that PS(¯I) is also wWC. This paper means one more step on the way to our ultimate goal: to prove that the nD repaired complex is continuously well-composed (CWC), that is, the boundary of its continuous analog is an (n − 1)- manifold.Ministerio de Economía y Competitividad MTM2015-67072-

Antioxidant, antibacterial and cell toxicity effects of polyphenols Fromahmeur bouamer grape seed extracts

In this work and for the first time, significant concentrations of total polyphenols and flavonoids from Vitis vinifera L. grape seed extracts were obtained (256.15 ± 17.40 mg GAE/gdm and 14.08 ± 0.64 mg CE/gdm, respectively).The LC/MS analysis revealed richness in procyanidins. For antioxidant, antimicrobial and antifungal effects, the grape seed extract (GSE) responded positively. At 100 μg/mL, GSE induced a moderate toxicity of the order of 3.88% on 3T6 cells at the first 24 hours of treatment, whereas, its prolonged effect to 48 hours reduced this toxicity to less than 0.5%. As for the anti-proliferative effect on tumoral cell lines, a cell death of 18.39% to 23.79% and 10.30% to 20.37% was registered respectively for HeLa and BCPAP cells during 24 and 48 hours of treatment. Consequently, it is possible to consider using GSE at lower concentrations as an anti-proliferative agent without losing sight of its benefic effect on healthy cells.Keywords: grape seed extract, 3T6 cell, antioxidant, antibacterial, anti-proliferation

Diatom beta-diversity in streams increases with spatial scale and decreases with nutrient enrichment across regional to sub-continental scales

Aim To quantify the relative contributions of local community assembly processes versus gamma-diversity to beta-diversity, and to assess how spatial scale and anthropogenic disturbance (i.e. nutrient enrichment) interact to dictate which driver dominates. Location France and the United States. Time period 1993-2011. Major taxa studied Freshwater stream diatoms. Methods beta-diversity along a nutrient enrichment gradient was examined across multiple spatial scales. beta-diversity was estimated using multi-site Sorensen dissimilarity. We assessed the relative importance of specialists versus generalists using Friedley coefficient, and the contribution of local community assembly versus gamma-diversity to beta-diversity across spatial scales, with a null model. Finally, we estimated the response of beta-diversity to environmental and spatial factors by testing the correlations between community, environmental and geographical distance matrices with partial Mantel tests. Results beta-diversity generally increased with spatial scale but the rate of increase depended on nutrient enrichment level. beta-diversity decreased significantly with increasing nutrient enrichment level due to the loss of specialist species. Local assembly was an important driver of beta-diversity especially under low nutrient enrichment. Significant partial Mantel correlations were observed between diatom beta-diversity and pure environmental distances under these conditions, highlighting the role of species sorting in local assembly processes. Conversely, in heavily enriched sites, only spatial distances were significantly correlated with beta-diversity, which indicated a substantial role of dispersal processes. Main conclusions Nutrient concentration mediated the expected increase in beta-diversity with spatial scales. Across spatial scales, beta-diversity was more influenced by local assembly processes rather than by gamma-diversity. Nutrient enrichment was associated with an overall decline in diatom beta-diversity and a shift in assembly processes from species sorting to dispersal, notably due to the elimination of some specialists and their subsequent replacement by generalists.Peer reviewe

Horizontal DNA transfer mechanisms of bacteria as weapons of intragenomic conflict

Horizontal DNA transfer (HDT) is a pervasive mechanism of diversification in many microbial species, but its primary evolutionary role remains controversial. Much recent research has emphasised the adaptive benefit of acquiring novel DNA, but here we argue instead that intragenomic conflict provides a coherent framework for understanding the evolutionary origins of HDT. To test this hypothesis, we developed a mathematical model of a clonally descended bacterial population undergoing HDT through transmission of mobile genetic elements (MGEs) and genetic transformation. Including the known bias of transformation toward the acquisition of shorter alleles into the model suggested it could be an effective means of counteracting the spread of MGEs. Both constitutive and transient competence for transformation were found to provide an effective defence against parasitic MGEs; transient competence could also be effective at permitting the selective spread of MGEs conferring a benefit on their host bacterium. The coordination of transient competence with cell-cell killing, observed in multiple species, was found to result in synergistic blocking of MGE transmission through releasing genomic DNA for homologous recombination while simultaneously reducing horizontal MGE spread by lowering the local cell density. To evaluate the feasibility of the functions suggested by the modelling analysis, we analysed genomic data from longitudinal sampling of individuals carrying Streptococcus pneumoniae. This revealed the frequent within-host coexistence of clonally descended cells that differed in their MGE infection status, a necessary condition for the proposed mechanism to operate. Additionally, we found multiple examples of MGEs inhibiting transformation through integrative disruption of genes encoding the competence machinery across many species, providing evidence of an ongoing "arms race." Reduced rates of transformation have also been observed in cells infected by MGEs that reduce the concentration of extracellular DNA through secretion of DNases. Simulations predicted that either mechanism of limiting transformation would benefit individual MGEs, but also that this tactic's effectiveness was limited by competition with other MGEs coinfecting the same cell. A further observed behaviour we hypothesised to reduce elimination by transformation was MGE activation when cells become competent. Our model predicted that this response was effective at counteracting transformation independently of competing MGEs. Therefore, this framework is able to explain both common properties of MGEs, and the seemingly paradoxical bacterial behaviours of transformation and cell-cell killing within clonally related populations, as the consequences of intragenomic conflict between self-replicating chromosomes and parasitic MGEs. The antagonistic nature of the different mechanisms of HDT over short timescales means their contribution to bacterial evolution is likely to be substantially greater than previously appreciated

Stream diatom biodiversity in islands and continents—A global perspective on effects of area, isolation and environment

Aim The species-area relationship (SAR) is one of the most distinctive biogeographic patterns, but global comparisons of the SARs between island and mainland are lacking for microbial taxa. Here, we explore whether the form of the SAR and the drivers of species richness, including area, environmental heterogeneity, climate and physico-chemistry, differ between islands and similarly sized areas on mainland, referred to as continental area equivalents (CAEs). Location Global. Taxon Stream benthic diatoms. Methods We generated CAEs on six continental datasets and examined the SARs of CAEs and islands (ISAR). Then, we compared CAEs and islands in terms of total richness and richness of different ecological guilds. We tested the factors contributing to richness in islands and CAEs with regressions. We used structural equation models to determine the effects of area versus environmental heterogeneity, climate and local conditions on species richness. Results We found a non-significant ISAR, but a significant positive SAR in CAEs. Richness in islands was related to productivity. Richness in CAEs was mainly dependent on area and climate, but not directly on environmental heterogeneity. Species richness within guilds exhibited inconsistent relationships with island isolation and area. Main conclusions Ecological and evolutionary processes shaping diatom island biogeography do not depend on area at the worldwide scale probably due to the presence of distinct species pool across islands. Conversely, area was an important driver of diatom richness in continents, and this effect could be attributed to dispersal. Continents had greater richness than islands, but this was a consequence of differences in environmental conditions such as specific island climatic conditions. We stress the need for more island data on benthic diatoms, particularly from archipelagos, to better understand the biogeography of this most speciose group of algae