Quantum entanglement and disentanglement of multi-atom systems

We present a review of recent research on quantum entanglement, with special emphasis on entanglement between single atoms, processing of an encoded entanglement and its temporary evolution. Analysis based on the density matrix formalism are described. We give a simple description of the entangling procedure and explore the role of the environment in creation of entanglement and in disentanglement of atomic systems. A particular process we will focus on is spontaneous emission, usually recognized as an irreversible loss of information and entanglement encoded in the internal states of the system. We illustrate some certain circumstances where this irreversible process can in fact induce entanglement between separated systems. We also show how spontaneous emission reveals a competition between the Bell states of a two qubit system that leads to the recently discovered "sudden" features in the temporal evolution of entanglement. An another problem illustrated in details is a deterministic preparation of atoms and atomic ensembles in long-lived stationary squeezed states and entangled cluster states. We then determine how to trigger the evolution of the stable entanglement and also address the issue of a steered evolution of entanglement between desired pairs of qubits that can be achieved simply by varying the parameters of a given system.Comment: Review articl

TEX264 coordinates p97- and SPRTN-mediated resolution of topoisomerase 1-DNA adducts

Eukaryotic topoisomerase 1 (TOP1) regulates DNA topology to ensure efficient DNA replication and transcription. TOP1 is also a major driver of endogenous genome instability, particularly when its catalytic intermediate—a covalent TOP1-DNA adduct known as a TOP1 cleavage complex (TOP1cc)—is stabilised. TOP1ccs are highly cytotoxic and a failure to resolve them underlies the pathology of neurological disorders but is also exploited in cancer therapy where TOP1ccs are the target of widely used frontline anti-cancer drugs. A critical enzyme for TOP1cc resolution is the tyrosyl-DNA phosphodiesterase (TDP1), which hydrolyses the bond that links a tyrosine in the active site of TOP1 to a 3’ phosphate group on a single-stranded (ss)DNA break. However, TDP1 can only process small peptide fragments from ssDNA ends, raising the question of how the ~90 kDa TOP1 protein is processed upstream of TDP1. Here we find that TEX264 fulfils this role by forming a complex with the p97 ATPase and the SPRTN metalloprotease. We show that TEX264 recognises both unmodified and SUMO1-modifed TOP1 and initiates TOP1cc repair by recruiting p97 and SPRTN. TEX264 localises to the nuclear periphery, associates with DNA replication forks, and counteracts TOP1ccs during DNA replication. Altogether, our study elucidates the existence of a specialised repair complex required for upstream proteolysis of TOP1ccs and their subsequent resolution

Polymerase delta-interacting protein 38 (PDIP38) modulates the stability and activity of the mitochondrial AAA+ protease CLPXP

Over a decade ago Polymerase δ interacting protein of 38 kDa (PDIP38) was proposed to play a role in DNA repair. Since this time, both the physiological function and subcellular location of PDIP38 has remained ambiguous and our present understanding of PDIP38 function has been hampered by a lack of detailed biochemical and structural studies. Here we show, that human PDIP38 is directed to the mitochondrion in a membrane potential dependent manner, where it resides in the matrix compartment, together with its partner protein CLPX. Our structural analysis revealed that PDIP38 is composed of two conserved domains separated by an α/β linker region. The N-terminal (YccV-like) domain of PDIP38 forms an SH3-like β-barrel, which interacts specifically with CLPX, via the adaptor docking loop within the N-terminal Zinc binding domain of CLPX. In contrast, the C-terminal (DUF525) domain forms an immunoglobin-like β-sandwich fold, which contains a highly conserved putative substrate binding pocket. Importantly, PDIP38 modulates the substrate specificity of CLPX and protects CLPX from LONM-mediated degradation, which stabilises the cellular levels of CLPX. Collectively, our findings shed new light on the mechanism and function of mitochondrial PDIP38, demonstrating that PDIP38 is a bona fide adaptor protein for the mitochondrial protease, CLPXP

Sono-electroanalysis: Application to the detection of lead in petrol

The quantitative detection of lead in petrol is shown to be possible by anodic stripping voltammetry in aqueous media under conditions of insonation-induced emulsification. An immersion horn probe is introduced into a thermostatted conventional three-electrode cell opposite a mercury plated platinum disk working electrode. Under ultrasonic emulsification of the sample, lead is preconcentrated as an amalgam on the Hg/Pt electrode surface via reduction at -1.0 V (vs. SCE). The large mass transport associated with power ultrasound makes this step highly efficient. Subsequently the lead is quantified by applying an anodic linear sweep of the potential from -1.0 V to -0.15 V (vs. SCE) so as to oxidize the Pb(0) to Pb(II). The area under the stripping peak gives a measure of the lead formed during the initial step. By use of standard microaddition of lead to the solution the system can be calibrated to give the total amount of lead present in the petrol sample. Experiments using samples of 4 star leaded petrol gave a total lead content of 380 ± 40 mgL-1. This value was in quantitative agreement with that obtained by an independent laboratory using atomic absorption spectroscopy (AAS). In addition to the high mass transport and emulsification insonation offers the crucial benefits of first surface activation and cleaning, helping to prevent electrode fouling by the organic components of petrol and second the complete extraction of lead from the water-insoluble target phase

Voltammetry of electroactive liquid redox systems: anion insertion and chemical reactions in microdroplets of para-tetrakis (6-methoxyhexyl) phenylenediamine, para- and meta-tetrahexylphenylenediamine

The effect of the structure of the organic precursor molecule on the electroinsertion of anions and on the formation of materials in the ionic liquid state is compared for three compounds, para-N, N, N′, N′-tetrahexylphenylenediamine (p-THPD), meta-N, N, N′, N′-tetrahexylphenylene diamine (m-THPD), and para-N, N, N′, N′-tetrakis(6-methoxyhexyl)phenylenediamine (p-TMHPD), by characterising their condensed phase voltammetric properties in aqueous media. The electrochemically driven anion insertion in p-THPD and p-TMHPD in the presence of ClO4-, F-, Cl-, Br-, I-, and SO42- is shown to be extremely sensitive to structure. The introduction of the methoxy end groups in p-TMHPD causes (1) a considerable shift to more negative electroinsertion potentials, (2) a less stable response which upon continuous cycling decreases, and (3) considerably lower anion selectivity. For the insertion of sulfate, only p-TMHPD yields an electrochemical response which is shown to be consistent with insertion of the dianion SO42-. The electrochemical oxidation of a deposit of m-THPD is accompanied by anion insertion and a chemical reaction step in an EC-type electrochemical process. The product of the chemical step is electrochemically active and results in a new reversible electroinsertion process. Starting materials and products of the microdroplet reactions are characterised by Maldi-TOF mass spectrometry and a reaction mechanism based on condensed phase polymerisation is proposed

Voltammetry of electroactive oil droplets. Part II: Comparison of experimental and simulation data for coupled ion and electron insertion processes and evidence for microscale convection

Modelling electrochemical processes at the three phase junction between electrode-aqueous electrolyte-oil droplet presents a considerable challenge due to the complexity of simultaneous electron transfer between electrode and droplet, ion uptake or expulsion between droplet and aqueous phase, the interaction of redox centers at high concentration, and transport processes accompanying the electrochemical process. For the case of oxidation of para-tetrahexylphenylenediamine (THPD) microdroplet deposits on basal plane pyrolytic graphite electrodes or random arrrays of microelectrodes (RAM) three models may be envisaged which proceed via A) exchange of ions between droplet and aqueous electrolyte with the electrochemical process commencing at the electrode-oil interface, B) rapid electron transport over the oil-aqueous electrolyte interface and the electrochemical process commencing from the oil-aqueous electrolyte interface inwards, and C) slow electron transport across the oil-aqueous electrolyte interface and the electrochemical process commencing solely from the triple interface. Numerical simulation procedures for these three models, which allow for interaction of redox centers via a regular solution theory approach, are compared with experimental data. A positive interaction parameter, Z = 1.4, consistent with a dominant ionic liquid-ionic liquid and neutral oil-neutral oil type interaction is determined from experimental data recorded at sufficiently slow scan rates. The overall mechanism, which governs the voltammetric characteristics at higher scan rates, is shown to be apparently consistent with the triple interface model C). However, the rate of diffusional transport determined by comparison of experimental with simulation data is orders of magnitudes too high. Additional convection processes, possibly of the Marangoni type, appear to be responsible for the fast rate observed for the redox process. The significance of the models presented in the context of microdroplet deposits for other related electrochemical systems is discussed