Intracellular transport of a heterologous membrane protein, the human transferrin receptor, in Saccharomyces cerevisiae

We have analyzed the intracellular behavior of the human transferrin receptor (TfR) in Saccharomyces cerevisiae. The major part of the heterologously expressed TfR, which has previously been used as a model for heterologous expression of membrane proteins in yeast, is localized in the endoplasmic reticulum (ER) membranes; a minor fraction is present in the plasma membrane (PM). The stability of the TfR depends on vacuolar proteases, implying that it is degraded in the vacuolar compartment. Degradation is further dependent on favorable transport conditions to this compartment. The main bottleneck of transport seems to be the transition from the ER to the PM. The chaperone Cne1p, which is involved in quality control in the ER, plays a role in regulating the amount of heterologous TfR, as deletion of CNE1 leads to significant accumulation of the protein. This is the first demonstration of the involvement of CNE1 in regulating the level of heterologous membrane proteins

Functional characterization of the recombinant N-methyltransferase domain from the multienzyme enniatin synthetase.

A 51 kDa fusion protein incorporating the N-methyltransferase domain of the multienzyme enniatin synthetase from Fusarium scirpi was expressed in Saccharomyces cerevisiae. The protein was purified and found to bind S-adenosyl methionine (AdoMet) as demonstrated by cross-linking experiments with (14)C-methyl-AdoMet under UV irradiation. Cofactor binding at equilibrium conditions was followed by saturation transfer difference (STD) NMR spectroscopy, and the native conformation of the methyltransferase was assigned. STD NMR spectroscopy yielded significant signals for H(2) and H(8) of the adenine moiety, H(1') of D-ribose, and S-CH(3) group of AdoMet. Methyl group transfer catalyzed by the enzyme was demonstrated by using aminoacyl-N-acetylcysteamine thioesters (aminoacyl-SNACs) of L-Val, L-Ile, and L-Leu, which mimic the natural substrate amino acids of enniatin synthetase presented by the enzyme bound 4'-phosphopantetheine arm. In these experiments the enzyme was incubated in the presence of the corresponding aminoacyl-SNAC and (14)C-methyl-AdoMet for various lengths of time, for up to 30 min. N-[(14)C-Methyl]-aminoacyl-SNAC products were extracted with EtOAc and separated by TLC. Acid hydrolysis of the isolated labeled compounds yielded the corresponding N-[(14)C-methyl] amino acids. Further proof for the formation of N-(14)C-methyl-aminoacyl-SNACs came from MALDI-TOF mass spectrometry which yielded 23 212 Da for N-methyl-valyl-SNAC, accompanied by the expected postsource decay (PSD) pattern. Interestingly, L-Phe, which is not a substrate amino acid of enniatin synthetase, also proved to be a methyl group acceptor. D-Val was not accepted as a substrate; this indicates selectivity for the L isomer

Antigen binding capacity of monovalent IgGs displayed by Fc-Sed1p measured by flow cytometry.

<p>The cells were dually labeled with goat anti-human Fc DyeLight 488, biotinylated PCSK9, and APC 635 labeled Streptavidin <b>A</b>) FACS analysis of labeled <i>Pichia pastoris</i> strains displaying Fc-Sed1p complexed with monovalent anti-Her2 antibody fragment (H+L) or <b>B</b>) an monovalent anti-PCSK9 (H+L) antibody fragment.</p

The construction of a proof of principle mating library and the isolation of high affinity, and high expression antigen binders using Fc-Sed1p.

<p><b>A</b>) Haploid <i>Pichia pastoris</i> strains containing Fc-Sed1p expression cassette were transformed with a library of Anti-PCSK9 Hc or a library of Anti-PCSK9 Lc. Following mating and selection, diploids were cultured to express full length IgG library. Cultures were labeled using 20nM biotinylated human PCSK9 and APC 635 labeled antihuman Kappa. DyeLight 488 labeled Streptavidin was used to detect biotinylated PCSK9. <b>B</b>) Analysis and enrichment of high affinity anti-PCSK9 binders using three rounds of sequential sorting (S1 > S2 > S3). Known anti-PCSK9 strain co-expressing Fc-Sed1p was labeled as above as a control. <b>C</b>) Sensograms showing binding and dissociation kinetics of rhPCSK9 to immobilized anti-PCSK9 antibodies. Each anti-PCSK9 antibody lead was captured on the chip to ~ 500 RU followed by analyte injections of wild-type human PCSK9 at concentrations ranging from 0.156–2.5nM. Kinetics for the highest PCSK9 concentration (2.5 nM) is depicted for these antibodies.</p

An antibody discovery and optimization scheme that utilizes Fc-Sed11p display-secretion technology in humanized <i>Pichia pastoris</i>.

<p>This paradigm enables progression from lead discovery to preclinical validation and development using a single host.</p

Characterization of the Pichia pastoris protein-O-mannosyltransferase gene family.

The methylotrophic yeast, Pichiapastoris, is an important organism used for the production of therapeutic proteins. However, the presence of fungal-like glycans, either N-linked or O-linked, can elicit an immune response or enable the expressed protein to bind to mannose receptors, thus reducing their efficacy. Previously we have reported the elimination of β-linked glycans in this organism. In the current report we have focused on reducing the O-linked mannose content of proteins produced in P. pastoris, thereby reducing the potential to bind to mannose receptors. The initial step in the synthesis of O-linked glycans in P. pastoris is the transfer of mannose from dolichol-phosphomannose to a target protein in the yeast secretory pathway by members of the protein-O-mannosyltransferase (PMT) family. In this report we identify and characterize the members of the P. pastoris PMT family. Like Candida albicans, P. pastoris has five PMT genes. Based on sequence homology, these PMTs can be grouped into three sub-families, with both PMT1 and PMT2 sub-families possessing two members each (PMT1 and PMT5, and PMT2 and PMT6, respectively). The remaining sub-family, PMT4, has only one member (PMT4). Through gene knockouts we show that PMT1 and PMT2 each play a significant role in O-glycosylation. Both, by gene knockouts and the use of Pmt inhibitors we were able to significantly reduce not only the degree of O-mannosylation, but also the chain-length of these glycans. Taken together, this reduction of O-glycosylation represents an important step forward in developing the P. pastoris platform as a suitable system for the production of therapeutic glycoproteins

Inhibitor sensitivity of <i>PMT</i> knockouts.

<p>For dilution assays, yeast cells were grown overnight in YSD and then adjusted to an OD600 of 1.0 using YSD, diluted in 10-fold increments, and then 3 µl of each dilution were spotted onto solid YSD media with varying concentrations of PMTi-3. The picture of the plate without PMTi-3 was taken after 48 hours, and the picture of the plates containing PMTi-3 were taken after 96 hours of incubation at 25^°C. YGLY4140 is the parent strain of YGLY6001 and YGLY4329, YGLY733 is the parent strain of YGLY3773 and YGLY5968, and NRRL -Y11430 is the parent strain of YGLY35032.</p