Disaster warning system: Satellite feasibility and comparison with terrestrial systems. Volume 1: Executive summary

The Disaster Warning System (DWS) is a conceptual system which will provide the National Weather Service (NWS) with communication services in the 1980s to help minimize losses caused by natural disasters. The object of this study is a comparative analysis between a terrestrial DWS and a satellite DWS. Baseline systems satisfying the NOAA requirements were synthesized in sufficient detail so that a comparison could be made in terms of performance and cost. The cost of both baseline systems is dominated by the disaster warning and spotter reporting functions. An effort was undertaken to reduce system cost through lower-capacity alternative systems generated by modifying the baseline systems. By reducing the number of required channels and modifying the spotter reporting techniques, alternative satellite systems were synthesized. A terrestrial alternative with the coverage reduced to an estimated 95 percent of the population was considered

Overcoming the false-minima problem in direct methods: Structure determination of the packaging enzyme P4 from bacteriophage φ13

The problems encountered during the phasing and structure determination of the packaging enzyme P4 from bacteriophage φ13 using the anomalous signal from selenium in a single-wavelength anomalous dispersion experiment (SAD) are described. The oligomeric state of P4 in the virus is a hexamer (with sixfold rotational symmetry) and it crystallizes in space group C2, with four hexamers in the crystallographic asymmetric unit. Current state-of-the-art ab initio phasing software yielded solutions consisting of 96 atoms arranged as sixfold symmetric clusters of Se atoms. However, although these solutions showed high correlation coefficients indicative that the substructure had been solved, the resulting phases produced uninterpretable electron-density maps. Only after further analysis were correct solutions found (also of 96 atoms), leading to the eventual identification of the positions of 120 Se atoms. Here, it is demonstrated how the difficulties in finding a correct phase solution arise from an intricate false-minima problem. © 2005 International Union of Crystallography - all rights reserved

Disaster warning system: Satellite feasibility and comparison with terrestrial systems. Volume 2: Final report

For abstract, see Vol. 1

Helping Deluxe Beds to sleep easy : a case study of agile project management

This case study describes the embedding of the Scrum project management framework as an innovation and operational improvement tool within a manufacturing Small to Medium Enterprise (SME) in the UK. The teaching notes inform 1) other UK manufacturing SMEs with novice teams, and 2) students at undergraduate and postgraduate level exploring innovation and operations management/improvement. The case advances our understanding of how small family-run manufacturing businesses can use contemporary frameworks such as Scrum to improve business operations and innovation. Deluxe Beds Ltd is a family SME manufacturing beds and mattresses with a technically novice workforce mainly with no formal educational background

Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification

Viral capsids ensure viral genome integrity by protecting the enclosed nucleic acids. Interactions between the genome and capsid and between individual capsid proteins (i.e., capsid architecture) are intimate and are expected to be characterized by strong evolutionary conservation. For this reason, a capsid structure-based viral classification has been proposed as a way to bring order to the viral universe. The seeming lack of sufficient sequence similarity to reproduce this classification has made it difficult to reject structural convergence as the basis for the classification. We reinvestigate whether the structure-based classification for viral coat proteins making icosahedral virus capsids is in fact supported by previously undetected sequence similarity. Since codon choices can influence nascent protein folding cotranslationally, we searched for both amino acid and nucleotide sequence similarity. To demonstrate the sensitivity of the approach, we identify a candidate gene for the pandoravirus capsid protein. We show that the structure-based classification is strongly supported by amino acid and also nucleotide sequence similarities, suggesting that the similarities are due to common descent. The correspondence between structure-based and sequence-based analyses of the same proteins shown here allow them to be used in future analyses of the relationship between linear sequence information and macromolecular function, as well as between linear sequence and protein folds. IMPORTANCE Viral capsids protect nucleic acid genomes, which in turn encode capsid proteins. This tight coupling of protein shell and nucleic acids, together with strong functional constraints on capsid protein folding and architecture, leads to the hypothesis that capsid protein-coding nucleotide sequences may retain signatures of ancient viral evolution. We have been able to show that this is indeed the case, using the major capsid proteins of viruses forming icosahedral capsids. Importantly, we detected similarity at the nucleotide level between capsid protein-coding regions from viruses infecting cells belonging to all three domains of life, reproducing a previously established structure-based classification of icosahedral viral capsids.Peer reviewe

MATURE: A Model Driven bAsed Tool to Automatically Generate a langUage That suppoRts CMMI Process Areas spEcification

Many companies have achieved a higher quality in their processes by using CMMI. Process definition may be efficiently supported by software tools. A higher automation level will make process improvement and assessment activities easier to be adapted to customer needs. At present, automation of CMMI is based on tools that support practice definition in a textual way. These tools are often enhanced spreadsheets. In this paper, following the Model Driven Development paradigm (MDD), a tool that supports automatic generation of a language that can be used to specify process areas practices is presented. The generation is performed from a metamodel that represents CMMI. This tool, differently from others available, can be customized according to user needs. Guidelines to specify the CMMI metamodel are also provided. The paper also shows how this approach can support other assessment method

Single-molecule measurements of viral ssRNA packaging

Genome packaging of double-stranded RNA (dsRNA) phages has been widely studied using biochemical and molecular biology methods. We adapted the existing in vitro packaging system of one such phage for single-molecule experimentation. To our knowledge, this is the first attempt to study the details of viral RNA packaging using optical tweezers. Pseudomonas phage phi 6 is a dsRNA virus with a tripartite genome. Positive-sense (+) single-stranded RNA (ssRNA) genome precursors are packaged into a preformed procapsid (PC), where negative strands are synthesized. We present single-molecule measurements of the viral ssRNA packaging by the phi 6 PC. Our data show that packaging proceeds intermittently in slow and fast phases, which likely reflects differences in the unfolding of the RNA secondary structures of the ssRNA being packaged. Although the mean packaging velocity was relatively low (0.07-0.54 nm/sec), packaging could reach 4.62 nm/sec during the fast packaging phase.Peer reviewe