Amélioration génétique bovine par voie de croisement et de sélection en Afrique Tropicale : Expériences du Cameroun

Ce travail passe en revue les résultats des travaux de recherches sur l’amélioration génétique des zébus locaux (Goudali, White et Red Fulani) par voie de sélection et de croisement avec les races exotiques (Holstein, Montbéliarde, Brahman américain, Jersiais, Tarentaise, Limousine et Charolaise). Ces travaux ont été conduits depuis 1952 dans les Centres de Recherches  Zootechniques de Wakwa et Bambui par l’Institut de Recherches Zootechniques (IRZ, aujourd’hui connue sous le nom de l’Institut de Recherche Agricole pour le Développement) du Cameroun, en système d’élevage semi-intensif dans les zones des hautes savanes guinéennes et des hauts plateaux de l’Ouest Cameroun. Les données proviennent des rapports d’activité et de consultations, des publications scientifiques et des entrevues. L’objectif est de ressortir les résultats saillants utiles pour les décideurs politiques, les chercheurs et les éleveurs. Les principaux résultats montrent que le potentiel laitier des croisés est généralement supérieur (>4 litres) à celui des races locales (>3,5 litres). Les génotypes ayant moins de 75% de sang exotique sont les plus performants en lait et viande. Les causes de mortalité par ordre d’importance sont nutritionnelles (36,8%),  accidentelles (29,6%), pathologiques (21,1%), parasitaires (7,7%) et reproductives (4,8%). Par rapport aux autres produits de croisement, les croisés Holsteins ont été plus lourds à la naissance (34,75 kg) avec une vitesse de croissance plus élevée (0,46 kg), une production laitière plus élevée (5,47 ± 0,17 litres), plus précoces (40,87 mois) et moins susceptibles au stress   Nuenvironnemental. Pour la filière bovin-à-viande, les performances de viande de la race synthétique Wakwa sont légèrement supérieures à celles des zébus Goudali sélectionnés dans le cheptel local. Cependant, le taux de susceptibilité à la  dermatophilose est estimé à 71,0%, 34,4% et 5,0% chez le pur, ½ et ¼ sang Brahman, respectivement. La sélection massale du zébu Goudali (variété Ngaoundéré) et la race synthétique Wakwa a permis d’obtenir des progrès génétiques significatifs, soient, respectivement, 8,60 kg et 20,40 kg. Cependant, les corrélations génétiques négatives entre les effets directs et maternels montrent que le progrès génétique serait davantage plus important si la sélection était concentrée sur les performances  directes et maternelles. Les expériences d’insémination artificielle menées à la SODEPA et à « Tadu Dairy Cooperative Society»montrent que l’industrie laitière est une entreprise rentable avec un rapport bénéfice-coût de 4,21. This work reviews the results of research on the genetic improvement of local zebus (Gudali, White and Red Fulani) through selection and crossbreeding with exotic cattle breeds (Holstein, Montbeliard, American Brahman, Jersey, Tarentaise, Limousine and Charolais). This work was started since 1952 by Institute of Animal Research (IRZ, now known as the Institute of Agricultural Research for Development) at the Wakwa and Bambui Research Centers, under semi-intensive management conditions in the  high Guinea savannah areas of the Adamawa Plateau and the highlands of West Cameroon. Data were obtained from activity and consultation reports, scientific publications and interviews. The objective is to highlight salient findings that are useful for policy makers, researchers and livestock producers. The main results show that the milk potential of crosses is generally higher (>4 liters) than that of local breeds (>3.5 liters). Genotypes with less than 75% exotic blood had the best milk and meat  production performance. The reported causes of mortality in order of importance are nutritional (36.8%), accidental (29.6%), pathological (21.1%), parasitic (7.7%) and reproductive (4.8%). Compared to the others crosses, Holstein crosses were found to be relatively heavier at birth (34.75 kg) with a higher growth rate (0.46 kg), higher daily milk production (5.47 ± 0.17 liters), earlier maturing (40.87 months), but more adapted to the breeding conditions and less susceptible to environmental stress. For the beef industry, the meat performance of the synthetic Wakwa breed is slightly better than that of the Gudali zebus selected from the local herd. However, the susceptibility rate to dermatophilosis was estimated at 71.0%, 34.4% and 5.0% in pure, ½ and ¼ blood Brahman, respectively. Individual selection of the Gudali zebu (Ngaoundéré subtype) and the synthetic Wakwa breed has resulted in significant genetic progress, 8.60 kg and 20.40 kg, respectively. However, the negative genetic correlations between direct and maternal effects showed that genetic progress would be more important if selection was concentrated on direct and maternal performance. Artificial insemination experiments conducted at SODEPA and Tadu Dairy Cooperative Society showed that the dairy industry is a profitable enterprise with a benefit-cost ratio of 4.21

Genomic epidemiology of SARS-CoV-2 infections in The Gambia: an analysis of routinely collected surveillance data between March, 2020, and January, 2022

Background: COVID-19, caused by SARS-CoV-2, is one of the deadliest pandemics of the past 100 years. Genomic sequencing has an important role in monitoring of the evolution of the virus, including the detection of new viral variants. We aimed to describe the genomic epidemiology of SARS-CoV-2 infections in The Gambia. Methods: Nasopharyngeal or oropharyngeal swabs collected from people with suspected cases of COVID-19 and international travellers were tested for SARS-CoV-2 with standard RT-PCR methods. SARS-CoV-2-positive samples were sequenced according to standard library preparation and sequencing protocols. Bioinformatic analysis was done using ARTIC pipelines and Pangolin was used to assign lineages. To construct phylogenetic trees, sequences were first stratified into different COVID-19 waves (waves 1–4) and aligned. Clustering analysis was done and phylogenetic trees constructed. Findings: Between March, 2020, and January, 2022, 11 911 confirmed cases of COVID-19 were recorded in The Gambia, and 1638 SARS-CoV-2 genomes were sequenced. Cases were broadly distributed into four waves, with more cases during the waves that coincided with the rainy season (July–October). Each wave occurred after the introduction of new viral variants or lineages, or both, generally those already established in Europe or in other African countries. Local transmission was higher during the first and third waves (ie, those that corresponded with the rainy season), in which the B.1.416 lineage and delta (AY.34.1) were dominant, respectively. The second wave was driven by the alpha and eta variants and the B.1.1.420 lineage. The fourth wave was driven by the omicron variant and was predominantly associated with the BA.1.1 lineage. Interpretation: More cases of SARS-CoV-2 infection were recorded in The Gambia during peaks of the pandemic that coincided with the rainy season, in line with transmission patterns for other respiratory viruses. The introduction of new lineages or variants preceded epidemic waves, highlighting the importance of implementing well structured genomic surveillance at a national level to detect and monitor emerging and circulating variants. Funding: Medical Research Unit The Gambia at London School of Hygiene & Tropical Medicine, UK Research and Innovation, WHO

Global surveillance of cancer survival 1995-2009: analysis of individual data for 25,676,887 patients from 279 population-based registries in 67 countries (CONCORD-2)

BACKGROUND: Worldwide data for cancer survival are scarce. We aimed to initiate worldwide surveillance of cancer survival by central analysis of population-based registry data, as a metric of the effectiveness of health systems, and to inform global policy on cancer control. METHODS: Individual tumour records were submitted by 279 population-based cancer registries in 67 countries for 25·7 million adults (age 15-99 years) and 75,000 children (age 0-14 years) diagnosed with cancer during 1995-2009 and followed up to Dec 31, 2009, or later. We looked at cancers of the stomach, colon, rectum, liver, lung, breast (women), cervix, ovary, and prostate in adults, and adult and childhood leukaemia. Standardised quality control procedures were applied; errors were corrected by the registry concerned. We estimated 5-year net survival, adjusted for background mortality in every country or region by age (single year), sex, and calendar year, and by race or ethnic origin in some countries. Estimates were age-standardised with the International Cancer Survival Standard weights. FINDINGS: 5-year survival from colon, rectal, and breast cancers has increased steadily in most developed countries. For patients diagnosed during 2005-09, survival for colon and rectal cancer reached 60% or more in 22 countries around the world; for breast cancer, 5-year survival rose to 85% or higher in 17 countries worldwide. Liver and lung cancer remain lethal in all nations: for both cancers, 5-year survival is below 20% everywhere in Europe, in the range 15-19% in North America, and as low as 7-9% in Mongolia and Thailand. Striking rises in 5-year survival from prostate cancer have occurred in many countries: survival rose by 10-20% between 1995-99 and 2005-09 in 22 countries in South America, Asia, and Europe, but survival still varies widely around the world, from less than 60% in Bulgaria and Thailand to 95% or more in Brazil, Puerto Rico, and the USA. For cervical cancer, national estimates of 5-year survival range from less than 50% to more than 70%; regional variations are much wider, and improvements between 1995-99 and 2005-09 have generally been slight. For women diagnosed with ovarian cancer in 2005-09, 5-year survival was 40% or higher only in Ecuador, the USA, and 17 countries in Asia and Europe. 5-year survival for stomach cancer in 2005-09 was high (54-58%) in Japan and South Korea, compared with less than 40% in other countries. By contrast, 5-year survival from adult leukaemia in Japan and South Korea (18-23%) is lower than in most other countries. 5-year survival from childhood acute lymphoblastic leukaemia is less than 60% in several countries, but as high as 90% in Canada and four European countries, which suggests major deficiencies in the management of a largely curable disease. INTERPRETATION: International comparison of survival trends reveals very wide differences that are likely to be attributable to differences in access to early diagnosis and optimum treatment. Continuous worldwide surveillance of cancer survival should become an indispensable source of information for cancer patients and researchers and a stimulus for politicians to improve health policy and health-care systems

New filovirus disease classification and nomenclature

Filoviruses, the members of the family Filoviridae, are currently classified into one proposed and five established genera (Supplementary Table 1). Of the twelve described filoviruses, six have been identified as aetiological agents of naturally occurring human disease outbreaks

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Effects of postpartum body weight changes on subsequent reproductive performance in N'Dama cattle maintained under traditional husbandry systems

Quantifies the effects of postpartum body weight changes on subsequent reproductive performance of N'Dama cattle managed under traditional husbandry systems in Gambia. Analysis of body weights from 4 months before conception to the month of conception showed that 71 percent of cows were gaining weight at a mean rate of 1.74 kg per month before conception. The results indicate that strategic supplementation of cows during the first 3 months after parturition either to maintain or to gain weight could lead to improved reproductive performance in village - managed animals

Towards Sustainable Adaptation to Climate Change: the Role of Indigenous Knowledge in Nigeria and Ghana

Climate change has been identified as a threat to poverty reduction and economic growth, with the potential to erode many of the development gains made in recent decades. From the short to the long term, climate change and variability threaten human and social development by altering customary means of livelihood and restricting the fulfilment of human potential. In all these, indigenous people are the most affected, considering their high vulnerability level. In view of this, such people find it difficult to adapt to climate variability and change as well as other environmental changes. Not only is the viability of indigenous livelihoods threatened, due to food insecurity, lack of potable water and poor health, but also the cultural integrity is also undermined. This study assessed the various sustainable indigenous adaptation strategies being utilised in the respective countries to combat the adverse effects of climate variability and change; and also, examined how sustainable the adaptation strategies were. The study employed the use of quantitative and qualitative methods to elicit information from the respondents from Ghana and Nigeria. The results indicate that there are major international differences but that adaptation strategies taken among indigenous people in the respective countries are similar. Indigenous people are resorting to soil-water conservation, identification of resistant crops to prevailing climate, use of appropriate techniques and chemicals for improving soil fertility, improvised harvesting techniques, and strategic planting periods for their crops. In most cases also, local people also embark on alternative livelihood options to support income levels of their households. The authors strongly recommend extension services and introduction of scientific technologies to complement indigenous knowledge approaches. Keywords: Sustainable practices, adaptation strategies, indigenous knowledge, climate chang

Biological and economic impact of trypanosome infections on milk production in N'Dama cattle managed under village conditions in The Gambia

Examines the productivity characteristics of village N'Dama cattle exposed to different levels of trypanosomiasis challenge in The Gambia over a 3-year period. 60 lactating cows in which Trypanosoma congolense and T. vivax had been detected on blood examination were compared with 50 cows which had not been found infected with trypanosomes during the monitoring period. The quantity of daily extracted during the 1st month of infection decreased by proportionately 0.25 in comparison to the amount extracted during the preceding month when parasites were not detected. The mean daily milk extracted for human consumption from uninfected cows durng a 6-month period was proportionately 0.26 higher than the mean for the infected cows

Health and production aspects of village based N'Dama cattle in The Gambia

Discusses health and production aspects of village based N'Dama cattle in The Gambia. Presents data on the monthly distribution of calving, average monthly weight and performance characteristics of N'Dama cows fed supplementary groundnut meal